Prupe.3G275800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007717
Physical Location & Seq
Reverse (-)
25400554 .. 25405730
5177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G275800.1

Sequence Viewer

Length: 690 bp
ATGGCGGGAAGTGACCCACGGAAGCACCTCTTCAACTTAATTCACGATTTCGCCTCCGAGAAGTCGCACGGAGAGCGAAGAGTGGTAGGTCTGAGGAAGCGAATTGAAGAGCTCCGATCTGAGCTAGAGGTTGCAAATGCAGAGCTCGAGGAAGCCAAGCGCAGCAAGGAAACTATTGAGCAAGATCTTAAAGGATACGAAGTTGAATTGCATATGAATGAAGCTACGATTCAAACGCTAGAGTCAAGGATTTCTCTGACTCAAGACGAGATTTCCACAGTCGGATCGGATTTGGATGCTCTTAAGAACAAAAAAGGGGCTTCGCGAGATGAGTTTATAAGCCAAATGTTTGAGATCAACACTCAGATAAGGAAGTTCCAAGAGTCAATTGCTCGAAAAATTGACAAGCTCTTGTACAATGGAAGTACAGAAGAAGAAGATCCCAAACTAGTGAAGGAGGAGGTTACTGAAGGTGCTTTAAGTACACTTGAAGATATGCTTGCTGGTGTAATATCTCAGACAACTGAAGTGGAAGAAGAATTCAAATCAGAACAGAACATTGAAAAGCAGGTCCAGCAGGCGCTGATTGATTGTGAAAGGAAGGTATTCTTGATGGAGGAGATGTTAGAAGCAACAAAAGCATTGCAGGACTTGACAAGATATCCTTTTCAAGATTGCATTGGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.29

Weight (kDa)

4.75

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 559
AccII CGCG 1 cut(s) 325
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 292, 434
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 2 cut(s) 489, 546
AfaI GTAC 3 cut(s) 416, 427, 484
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 8 cut(s) 34, 107, 206, 233, 491, 544, 563, 671
AhlI ACTAGT 1 cut(s) 448
AluBI AGCT 5 cut(s) 112, 124, 145, 224, 409
AluI AGCT 5 cut(s) 112, 124, 145, 224, 409
Alw21I GWGCWC 2 cut(s) 114, 147
AlwI GGATC 2 cut(s) 292, 434
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 605
AspLEI GCGC 2 cut(s) 162, 583
AspS9I GGNCC 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 114, 147
Bbv12I GWGCWC 2 cut(s) 114, 147
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 607
BciVI GTATCC 1 cut(s) 188
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 3 cut(s) 125, 239, 449
BfoI RGCGCY 1 cut(s) 584
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 559
BfuI GTATCC 1 cut(s) 188
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 571
BmsI GCATC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bse3DI GCAATG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 4 cut(s) 83, 111, 377, 530
BseRI GAGGAG 2 cut(s) 473, 632
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 114, 147
BsiHKCI CYCGRG 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 114, 147
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 116, 184, 284, 354, 439
Bsp68I TCGCGA 1 cut(s) 325
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 84, 112, 376, 529
BspFNI CGCG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 2 cut(s) 292, 434
BspQI GCTCTTC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 5 cut(s) 116, 184, 284, 354, 439
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 3 cut(s) 35, 73, 102
BstAFI CTTAAG 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 501, 579
BstDEI CTNAG 4 cut(s) 92, 120, 363, 516
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 325
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 162, 583
BstKTI GATC 5 cut(s) 119, 187, 287, 357, 442
BstMBI GATC 5 cut(s) 116, 184, 284, 354, 439
BstMWI GCNNNNNNNGC 3 cut(s) 73, 574, 638
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 184, 439
BstYI RGATCY 2 cut(s) 184, 439
BsuI GTATCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 301
BtuMI TCGCGA 1 cut(s) 325
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 501, 579
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 2 cut(s) 162, 583
Cfr13I GGNCC 1 cut(s) 571
Csp6I GTAC 3 cut(s) 415, 426, 483
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviJI RGCY 8 cut(s) 112, 124, 145, 155, 224, 320, 342, 409
CviKI_1 RGCY 8 cut(s) 112, 124, 145, 155, 224, 320, 342, 409
CviQI GTAC 3 cut(s) 415, 426, 483
DdeI CTNAG 4 cut(s) 92, 120, 363, 516
DpnI GATC 5 cut(s) 118, 186, 286, 356, 441
DpnII GATC 5 cut(s) 116, 184, 284, 354, 439
Eam1104I CTCTTC 3 cut(s) 35, 73, 102
EarI CTCTTC 3 cut(s) 35, 73, 102
Ecl136II GAGCTC 2 cut(s) 112, 145
Eco24I GRGCYC 2 cut(s) 114, 147
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 2 cut(s) 112, 145
Eco57I CTGAAG 2 cut(s) 489, 546
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 2 cut(s) 112, 145
EcoRI GAATTC 1 cut(s) 539
EcoRV GATATC 1 cut(s) 662
EcoT38I GRGCYC 2 cut(s) 114, 147
FaiI YATR 4 cut(s) 213, 215, 338, 497
FalI AAGNNNNNCTT 8 cut(s) 14, 46, 483, 515, 593, 625, 649, 681
FauNDI CATATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 2 cut(s) 114, 147
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 3 cut(s) 125, 239, 449
GlaI GCGC 2 cut(s) 161, 582
GluI GCNGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 584
HhaI GCGC 2 cut(s) 162, 583
Hin6I GCGC 2 cut(s) 160, 581
HinP1I GCGC 2 cut(s) 160, 581
HinfI GANTC 4 cut(s) 229, 242, 259, 383
Hpy166II GTNNAC 1 cut(s) 485
Hpy188III TCNNGA 5 cut(s) 44, 263, 324, 610, 671
Hpy8I GTNNAC 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 448, 464, 595
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 5 cut(s) 134, 140, 211, 646, 678
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 574, 638
HpyF3I CTNAG 4 cut(s) 92, 120, 363, 516
HspAI GCGC 2 cut(s) 160, 581
Kzo9I GATC 5 cut(s) 116, 184, 284, 354, 439
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 489, 554, 563, 587, 632
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 286
MaeI CTAG 3 cut(s) 125, 239, 449
MaeIII GTNAC 3 cut(s) 11, 463, 683
MalI GATC 5 cut(s) 118, 186, 286, 356, 441
MboI GATC 5 cut(s) 116, 184, 284, 354, 439
MboII GAAGA 9 cut(s) 22, 90, 119, 443, 446, 449, 503, 545, 548
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 2 cut(s) 184, 439
MhlI GDGCHC 2 cut(s) 114, 147
MluCI AATT 6 cut(s) 39, 102, 206, 387, 399, 539
MlyI GAGTC 3 cut(s) 251, 253, 392
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 38, 64, 87, 121, 142, 451, 454, 610
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 4 cut(s) 38, 189, 303, 479
MslI CAYNNNNRTG 1 cut(s) 216
MspCI CTTAAG 1 cut(s) 302
MunI CAATTG 1 cut(s) 387
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 3 cut(s) 73, 574, 638
NdeI CATATG 1 cut(s) 213
NdeII GATC 5 cut(s) 116, 184, 284, 354, 439
NmuCI GTSAC 1 cut(s) 11
NruI TCGCGA 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 3 cut(s) 250, 253, 391
PpsI GAGTC 3 cut(s) 250, 253, 391
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 2 cut(s) 114, 147
PspPI GGNCC 1 cut(s) 571
PspXI VCTCGAGB 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 2 cut(s) 184, 439
RruI TCGCGA 1 cut(s) 325
RsaI GTAC 3 cut(s) 416, 427, 484
RsaNI GTAC 3 cut(s) 415, 426, 483
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 2 cut(s) 114, 147
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 38, 189, 303, 479
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 5 cut(s) 116, 184, 284, 354, 439
Sau96I GGNCC 1 cut(s) 571
SchI GAGTC 3 cut(s) 251, 253, 392
SduI GDGCHC 2 cut(s) 114, 147
SfaNI GCATC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 3 cut(s) 146, 261, 302
SmoI CTYRAG 3 cut(s) 146, 261, 302
SpeI ACTAGT 1 cut(s) 448
Sse9I AATT 6 cut(s) 39, 102, 206, 387, 399, 539
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 125, 239, 449
SstI GAGCTC 2 cut(s) 114, 147
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 147, 394
TasI AATT 6 cut(s) 39, 102, 206, 387, 399, 539
TatI WGTACW 3 cut(s) 414, 425, 482
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 4 cut(s) 38, 189, 303, 479
Tru9I TTAA 4 cut(s) 38, 189, 303, 479
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 230, 234
TspGWI ACGGA 2 cut(s) 34, 84
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 3 cut(s) 125, 239, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.