Rh2BG627400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007717
Physical Location & Seq
Reverse (-)
84909317 .. 84911318
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG627400.1

Sequence Viewer

Length: 903 bp
ATGCGCGTGAAGTGGGCCGCTAGCCATGCTTGGACTGGAATAGCGCGCCCTTATATAAAACGACGAGTCACTCGGATAGTCTCCCAGCACAAACGGAAGCGAAGCAGAGAGTCAAGTCGGTCAGTGATGGCGGGAAGCGACCCCCGGAAGCACCTCATGAACTTGATTCACGACTTCGCCTCCGAGAAGTCTCAGGGAGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAAGAGCTGACGTCTCAGCTTGAGGTCAGAAATGCAGAGCTTGAAGAAGCCAAGCGCACCAAGGAGTCTATTGAGCAAGAGGTTCGAGGCTACGAAGTTGAATTGGCTATGAATGAAGCTACGATTCAAACGCTTGAGTCAAGGATTTCGCTGACGCAAGAGGAGGTTTCCACAGTTGGATCTAACTTGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAAATGTTTGAGCTAAACTCTAAGATAAGGAAGTTCCAAGAGTCAATTGCTGGGAAAATTCATGAGGAGAATTATATGGAAACTGAAGCTGGTGATGAAGGTCAGGAACTAGTAAGGGAGGAGGTTTCTGAGGTATCTTTAAGAGCACTTGAGGACATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTAGAAGAAGAATACAAATCAGAACAGAATATTCAAAAGCAAGTCCAGCAGGAGTTGGTTGATTGTGAAAGGAAGGTATTCCTGATGGAGGAGACATTGAACATAACAAAGGAATTGCAAGATTTGACAAGATATCCTTTTCAAGAGTGCATTGATTACCAAAATTACTCAATATTTAGCGCTATATACTCCCCTAGAACACGGAAAATTCAGAATCCAAAGAAACTCATTGTTTACATAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.91

Weight (kDa)

5.94

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccII CGCG 2 cut(s) 6, 46
AciI CCGC 2 cut(s) 18, 131
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 525, 864
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 242
AfeI AGCGCT 1 cut(s) 838
AfiI CCNNNNNNNGG 1 cut(s) 745
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 6 cut(s) 275, 332, 359, 692, 757, 800
AhlI ACTAGT 1 cut(s) 577
AluBI AGCT 9 cut(s) 238, 250, 271, 350, 425, 443, 481, 557, 653
AluI AGCT 9 cut(s) 238, 250, 271, 350, 425, 443, 481, 557, 653
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 5 cut(s) 85, 195, 249, 641, 743
AlwI GGATC 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 838
AoxI GGCC 2 cut(s) 15, 214
ApeKI GCWGC 2 cut(s) 443, 446
ApoI RAATTY 2 cut(s) 525, 864
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 5 cut(s) 6, 46, 48, 288, 839
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 572
AsuNHI GCTAGC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 218
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 430, 433
BccI CCATC 2 cut(s) 121, 736
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 5 cut(s) 85, 195, 249, 641, 743
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 3 cut(s) 21, 578, 852
BfoI RGCGCY 1 cut(s) 840
BfrI CTTAAG 1 cut(s) 428
BisI GCNGC 3 cut(s) 18, 444, 447
BlsI GCNGC 3 cut(s) 19, 445, 448
Bme1390I CCNGG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpuEI CTTGAG 3 cut(s) 272, 386, 638
BpuMI CCSGG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 143, 291
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse1I ACTGG 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 143, 291
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 5 cut(s) 206, 209, 260, 588, 636
BseNI ACTGG 1 cut(s) 40
BsePI GCGCGC 1 cut(s) 44
BseRI GAGGAG 4 cut(s) 407, 548, 602, 761
BseXI GCAGC 2 cut(s) 430, 433
BseYI CCCAGC 2 cut(s) 84, 518
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 6, 46
BshFI GGCC 2 cut(s) 17, 216
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 5 cut(s) 85, 195, 249, 641, 743
BsmBI CGTCTC 1 cut(s) 249
BsnI GGCC 2 cut(s) 17, 216
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 410
BspACI CCGC 2 cut(s) 18, 131
BspANI GGCC 2 cut(s) 17, 216
BspCNI CTCAG 5 cut(s) 205, 210, 259, 589, 637
BspFNI CGCG 2 cut(s) 6, 46
BspHI TCATGA 2 cut(s) 156, 529
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 428
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 143, 291
BssHII GCGCGC 1 cut(s) 44
BssMI GATC 1 cut(s) 410
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 199, 228
BstACI GRCGYC 1 cut(s) 242
BstAFI CTTAAG 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 22, 46, 630
BstDEI CTNAG 6 cut(s) 192, 218, 246, 489, 597, 645
BstENI CCTNNNNNAGG 1 cut(s) 743
BstFNI CGCG 2 cut(s) 6, 46
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 5 cut(s) 6, 46, 48, 288, 839
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 5 cut(s) 85, 195, 249, 641, 743
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 26, 703
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 143
BstUI CGCG 2 cut(s) 6, 46
BstV1I GCAGC 2 cut(s) 430, 433
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 17, 216
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 22, 46, 630
CciI TCATGA 2 cut(s) 156, 529
CfoI GCGC 5 cut(s) 6, 46, 48, 288, 839
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 394
CviAII CATG 4 cut(s) 26, 157, 530, 625
DdeI CTNAG 6 cut(s) 192, 218, 246, 489, 597, 645
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 199, 228
EarI CTCTTC 2 cut(s) 199, 228
Eco130I CCWWGG 1 cut(s) 291
Eco32I GATATC 1 cut(s) 791
Eco47III AGCGCT 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 573
Eco81I CCTNAGG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRV GATATC 1 cut(s) 791
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 4 cut(s) 29, 160, 533, 628
FalI AAGNNNNNCTT 2 cut(s) 778, 810
FatI CATG 4 cut(s) 25, 156, 529, 624
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 18, 444, 447
Fsp4HI GCNGC 3 cut(s) 18, 444, 447
FspBI CTAG 3 cut(s) 21, 578, 852
GlaI GCGC 5 cut(s) 5, 45, 47, 287, 838
GluI GCNGC 3 cut(s) 18, 444, 447
GsaI CCCAGC 2 cut(s) 88, 522
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 2 cut(s) 17, 216
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 394
HhaI GCGC 5 cut(s) 6, 46, 48, 288, 839
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 4 cut(s) 29, 160, 533, 628
Hin6I GCGC 5 cut(s) 4, 44, 46, 286, 837
HinP1I GCGC 5 cut(s) 4, 44, 46, 286, 837
HinfI GANTC 9 cut(s) 66, 110, 166, 228, 296, 355, 368, 509, 871
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 7 cut(s) 75, 184, 260, 598, 646, 679, 870
Hpy188III TCNNGA 6 cut(s) 157, 170, 530, 572, 739, 800
Hpy8I GTNNAC 1 cut(s) 892
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 560, 724
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 266, 449, 775, 807
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 703
HpyF3I CTNAG 6 cut(s) 192, 218, 246, 489, 597, 645
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 29, 160, 533, 628
HspAI GCGC 5 cut(s) 4, 44, 46, 286, 837
Kzo9I GATC 1 cut(s) 410
LguI GCTCTTC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 430, 433
MaeI CTAG 3 cut(s) 21, 578, 852
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 5 cut(s) 216, 245, 287, 674, 677
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 7 cut(s) 332, 513, 525, 538, 770, 820, 864
MlyI GAGTC 5 cut(s) 75, 119, 305, 377, 518
MmeI TCCRAC 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 3 cut(s) 429, 608, 901
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 513
MvnI CGCG 2 cut(s) 6, 46
MwoI GCNNNNNNNGC 2 cut(s) 26, 703
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 410
NheI GCTAGC 1 cut(s) 20
NlaIII CATG 4 cut(s) 29, 160, 533, 628
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 628
PagI TCATGA 2 cut(s) 156, 529
PauI GCGCGC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 166, 228, 355, 871
PkrI GCNGC 3 cut(s) 19, 445, 448
PleI GAGTC 5 cut(s) 74, 118, 304, 376, 517
PpsI GAGTC 5 cut(s) 74, 118, 304, 376, 517
PspFI CCCAGC 2 cut(s) 84, 518
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 410
PteI GCGCGC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 429, 608, 901
SatI GCNGC 3 cut(s) 18, 444, 447
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 5 cut(s) 75, 119, 305, 377, 518
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 616
SmlI CTYRAG 4 cut(s) 251, 365, 428, 617
SmoI CTYRAG 4 cut(s) 251, 365, 428, 617
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 7 cut(s) 332, 513, 525, 538, 770, 820, 864
SsiI CCGC 2 cut(s) 18, 131
SspI AATATT 2 cut(s) 688, 831
SspMI CTAG 3 cut(s) 21, 578, 852
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 231, 316
TaqII GACCGA 1 cut(s) 108
TasI AATT 7 cut(s) 332, 513, 525, 538, 770, 820, 864
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 166, 228, 355, 871
Tru1I TTAA 3 cut(s) 429, 608, 901
Tru9I TTAA 3 cut(s) 429, 608, 901
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 443, 446
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 6 cut(s) 173, 356, 360, 451, 518, 579
TspGWI ACGGA 2 cut(s) 109, 874
TspRI CASTG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 428
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 2 cut(s) 525, 864
XceI RCATGY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 3 cut(s) 21, 578, 852
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.