Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

10731518 .. 10733032

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAGCGTCGTCTCAAGCTTCCATCAATCATGGAAGAGTTTGATTCTCGCAAGCCAACGTTGCAACACAGTGAAGCAAATCAAATCAACACATTCTCTATTCATCATCCATGGCCTCCATCGAAACACTTACGCAATTAGCAAACTTCTCACAGCTTTTCTCCATCTTCCCAATTTAAACAAACACTTTCACTACGCTTCCTCTATATTCGATTCGATTGAGATTCCTAACTCATTCGTTTACGATACTATGATAAGAATCTGCTCCAGAAGCTCTCAGCCTCACCTGGGTTTACGATATTTTCTATTAATGGTGAAGGAAGAAGAAGAAGATATAGCTCCTAGTTATCTCACGTTTCATTTCTTGATTGTTGCGTGTTTAAAAGCTTGTTTCTTCTCTGTGGGTAAGCAAATTCATTGTTGGGTGGTTAAAAATGGTGTCTTTTTATCGGATAGTCATGTACAGACTGGAGTTTTGAGGATTTATGTGGAAGATAAATTGTTGTTAGATGCACGCAAGGTGTTCGATGAAATTCCACAACCAGATGTTGTGAAATGGGATGTTTTGATGAATGGGTATGTTAGATGTGGTTTAGGTTCTGAGGGTTTAGAGGTGTTTAGGGAGATGTTGGTTAAAGGACTAGAGCCTGATGAGTTTTCGGTTACTACGGCATTAACGGCTTGTGCACAAGTTGGGGCTTTAGCTCAGGGGAAGTGGATTCATGAGTTTGTTAAAAAGAAGAGTTGGATTGAGTCTGATGTGTTTGTAGGAACGGCTTTGGTTGACATGTATGCTAAGTGTGGTTGCATAGAGACGGCTGTGGAAGTTTTCAAAAAGTTGACTAGGAGGAATGTCTTCTCATGGGCAGCTTTAATTGGAGGATATGCGGCTTATGGTTATGCAAAGAAAGCTATGACGTGTTTGGAACGGTTGGAACGAGAAGATGGTATTAAGCCTGATAGTGTAGTTCTTCTTGGGGTCTTAGCCGCTTGTGCTCATGGAGGATTTCTTGAAGAAGGCAGATCAATGTTAGAAAATATGGAAGCTCGATACGAAATTACTCCAAAGCATGAGCATTACAGCTGTATAGTAGATTTGATGTGCAGAGCTGGAAGATTAGATGATGCACTTAATCTTATCGAAAAAATGCCAATGAAACCGCTTGCATCTGTTTGGGGTGCTTTACTGAATGGCTGTCGAACGCACAAGAATGTTGAACTCGGAGAACTAGCTGTTAAAAACCTTCTTGACTTGGAGAAGGGAAATGTGGAGGAAGAGGAAGCAGCTCTTGTTCAACTATCTAATATTTACTTTAGTGTTCAAAGAAATCCCGAGGCATCTAAAGTTCGTGGGATGATAGAGCAGAGGGGGGTAAGAAAGACACCAGGATGGAGTGTGTTAGAGGTGGATGGGAATGTTACCAAATTTGTTTCGGGAGATGTGTCGCACCCAAATCTTCTACAAATTCACACAGTGATTCATCTCCTATCTGTTGATGCCTTGCAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

504

Amino Acids

56.57

Weight (kDa)

6.68

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	181 - 229	4.1e-10	PPR repeat family
PPR_1	PF12854	357 - 383	1.7e-06	PPR repeat
E_motif	PF20431	402 - 467	1.4e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	887, 987, 1160
AclI	AACGTT	1 cut(s)	58
AcsI	RAATTY	4 cut(s)	411, 531, 1424, 1464
AdeI	CACNNNGTG	1 cut(s)	1474
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	786, 917
AgsI	TTSAA	5 cut(s)	832, 1013, 1217, 1295, 1322
AjiI	CACGTC	1 cut(s)	918
AjnI	CCWGG	2 cut(s)	285, 1384
Alw21I	GWGCWC	2 cut(s)	688, 997
Alw26I	GTCTC	2 cut(s)	16, 806
Alw44I	GTGCAC	1 cut(s)	684
Ama87I	CYCGRG	1 cut(s)	1331
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	866, 1283
ApoI	RAATTY	4 cut(s)	411, 531, 1424, 1464
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AseI	ATTAAT	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	854
AsuHPI	GGTGA	2 cut(s)	275, 325
AvaI	CYCGRG	1 cut(s)	1331
BaeGI	GKGCMC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	847
Bbv12I	GWGCWC	2 cut(s)	688, 997
BbvI	GCAGC	2 cut(s)	878, 1295
BccI	CCATC	6 cut(s)	30, 126, 171, 938, 1383, 1403
BceAI	ACGGC	4 cut(s)	684, 693, 789, 831
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	2 cut(s)	287, 1386
BcoDI	GTCTC	2 cut(s)	16, 806
BfaI	CTAG	5 cut(s)	342, 641, 843, 1229, 1513
BisI	GCNGC	4 cut(s)	867, 888, 987, 1284
BlsI	GCNGC	4 cut(s)	868, 889, 988, 1285
Bme1390I	CCNGG	2 cut(s)	287, 1386
BmeT110I	CYCGRG	1 cut(s)	1331
BmgBI	CACGTC	1 cut(s)	918
BmrFI	CCNGG	2 cut(s)	287, 1386
BmsI	GCATC	5 cut(s)	499, 1114, 1175, 1346, 1486
BpiI	GAAGAC	1 cut(s)	847
BpmI	CTGGAG	2 cut(s)	250, 489
Bpu10I	CCTNAGC	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	109, 286, 1332
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	287, 1386
BseDI	CCNNGG	3 cut(s)	109, 286, 1332
BseGI	GGATG	5 cut(s)	105, 565, 1359, 1394, 1414
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	3 cut(s)	290, 591, 719
BseNI	ACTGG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	878, 1295
BsgI	GTGCAG	1 cut(s)	1123
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	688, 997
BsiHKCI	CYCGRG	1 cut(s)	1331
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	16, 806
BsmBI	CGTCTC	2 cut(s)	16, 806
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	1331
Bsp1286I	GDGCHC	2 cut(s)	688, 997
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	1022
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	3 cut(s)	887, 987, 1160
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	3 cut(s)	289, 592, 718
BspHI	TCATGA	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	109, 286, 1332
BssMI	GATC	1 cut(s)	1022
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	287, 1386
Bst4CI	ACNGT	3 cut(s)	70, 930, 1474
Bst6I	CTCTTC	3 cut(s)	29, 734, 1269
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	52, 514, 1164
BstDEI	CTNAG	5 cut(s)	276, 600, 705, 795, 982
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	5 cut(s)	105, 565, 1359, 1394, 1414
BstKTI	GATC	1 cut(s)	1025
BstMAI	GTCTC	2 cut(s)	16, 806
BstMBI	GATC	1 cut(s)	1022
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 270, 677, 908, 992
BstNI	CCWGG	2 cut(s)	287, 1386
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	285, 1384
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	878, 1295
BstV2I	GAAGAC	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	918
BtsCI	GGATG	5 cut(s)	105, 565, 1359, 1394, 1414
BtsIMutI	CAGTG	2 cut(s)	75, 1479
Cac8I	GCNNGC	3 cut(s)	52, 514, 1164
CciI	TCATGA	1 cut(s)	721
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	8 cut(s)	30, 110, 458, 722, 787, 861, 998, 1070
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	5 cut(s)	276, 600, 705, 795, 982
DpnI	GATC	1 cut(s)	1024
DpnII	GATC	1 cut(s)	1022
DraI	TTTAAA	2 cut(s)	177, 381
DraIII	CACNNNGTG	1 cut(s)	1474
Eam1104I	CTCTTC	3 cut(s)	29, 734, 1269
EarI	CTCTTC	3 cut(s)	29, 734, 1269
Eco130I	CCWWGG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	1331
EcoRII	CCWGG	2 cut(s)	285, 1384
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	2 cut(s)	16, 806
FaeI	CATG	8 cut(s)	33, 113, 461, 725, 790, 864, 1001, 1073
FalI	AAGNNNNNCTT	2 cut(s)	1272, 1304
FatI	CATG	8 cut(s)	29, 109, 457, 721, 786, 860, 997, 1069
Fnu4HI	GCNGC	4 cut(s)	867, 888, 987, 1284
FokI	GGATG	5 cut(s)	92, 572, 1366, 1401, 1421
Fsp4HI	GCNGC	4 cut(s)	867, 888, 987, 1284
FspBI	CTAG	5 cut(s)	342, 641, 843, 1229, 1513
GluI	GCNGC	4 cut(s)	867, 888, 987, 1284
GsuI	CTGGAG	2 cut(s)	250, 489
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	8 cut(s)	33, 113, 461, 725, 790, 864, 1001, 1073
HincII	GTYRAC	2 cut(s)	784, 840
HindII	GTYRAC	2 cut(s)	784, 840
HindIII	AAGCTT	2 cut(s)	16, 384
HinfI	GANTC	8 cut(s)	43, 212, 223, 258, 718, 752, 1477, 1507
HphI	GGTGA	2 cut(s)	275, 325
Hpy166II	GTNNAC	5 cut(s)	241, 293, 686, 784, 840
Hpy188I	TCNGA	4 cut(s)	451, 601, 757, 1223
Hpy188III	TCNNGA	7 cut(s)	267, 364, 722, 1010, 1247, 1331, 1434
Hpy8I	GTNNAC	5 cut(s)	241, 293, 686, 784, 840
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	310, 1010, 1252, 1253
HpyCH4III	ACNGT	3 cut(s)	70, 930, 1474
HpyCH4IV	ACGT	3 cut(s)	58, 353, 917
HpyCH4V	TGCA	9 cut(s)	63, 512, 686, 807, 902, 1104, 1127, 1166, 1504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 270, 677, 908, 992
HpyF3I	CTNAG	5 cut(s)	276, 600, 705, 795, 982
HpySE526I	ACGT	3 cut(s)	58, 353, 917
Hsp92II	CATG	8 cut(s)	33, 113, 461, 725, 790, 864, 1001, 1073
Kzo9I	GATC	1 cut(s)	1022
LmnI	GCTCC	2 cut(s)	269, 343
Lsp1109I	GCAGC	2 cut(s)	878, 1295
LweI	GCATC	5 cut(s)	499, 1114, 1175, 1346, 1486
MaeI	CTAG	5 cut(s)	342, 641, 843, 1229, 1513
MaeII	ACGT	3 cut(s)	58, 353, 917
MaeIII	GTNAC	2 cut(s)	661, 1417
MalI	GATC	1 cut(s)	1024
MboI	GATC	1 cut(s)	1022
MhlI	GDGCHC	2 cut(s)	688, 997
MluCI	AATT	9 cut(s)	135, 172, 411, 497, 531, 873, 1056, 1424, 1464
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	2 cut(s)	725, 912
MroXI	GAANNNNTTC	1 cut(s)	854
MslI	CAYNNNNRTG	2 cut(s)	1209, 1387
MspA1I	CMGCKG	1 cut(s)	1083
MspR9I	CCNGG	2 cut(s)	287, 1386
MvaI	CCWGG	2 cut(s)	287, 1386
MwoI	GCNNNNNNNGC	5 cut(s)	60, 270, 677, 908, 992
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	1022
NlaIII	CATG	8 cut(s)	33, 113, 461, 725, 790, 864, 1001, 1073
NspI	RCATGY	1 cut(s)	790
PagI	TCATGA	1 cut(s)	721
PciI	ACATGT	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	934
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	7 cut(s)	43, 212, 223, 258, 718, 1477, 1507
PkrI	GCNGC	4 cut(s)	868, 889, 988, 1285
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PscI	ACATGT	1 cut(s)	786
PshBI	ATTAAT	1 cut(s)	308
Psp1406I	AACGTT	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	285, 1384
PspGI	CCWGG	2 cut(s)	285, 1384
PvuII	CAGCTG	1 cut(s)	1083
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	1209, 1387
SatI	GCNGC	4 cut(s)	867, 888, 987, 1284
Sau3AI	GATC	1 cut(s)	1022
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	2 cut(s)	287, 1386
SduI	GDGCHC	2 cut(s)	688, 997
SfaNI	GCATC	5 cut(s)	499, 1114, 1175, 1346, 1486
SmiMI	CAYNNNNRTG	2 cut(s)	1209, 1387
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	9 cut(s)	135, 172, 411, 497, 531, 873, 1056, 1424, 1464
SsiI	CCGC	3 cut(s)	887, 987, 1160
SspI	AATATT	1 cut(s)	1306
SspMI	CTAG	5 cut(s)	342, 641, 843, 1229, 1513
StyD4I	CCNGG	2 cut(s)	285, 1384
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	70, 930, 1474
TaiI	ACGT	3 cut(s)	61, 356, 920
TaqI	TCGA	7 cut(s)	121, 210, 215, 525, 1048, 1140, 1198
TasI	AATT	9 cut(s)	135, 172, 411, 497, 531, 873, 1056, 1424, 1464
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	2 cut(s)	890, 989
TfiI	GAWTC	7 cut(s)	43, 212, 223, 258, 718, 1477, 1507
TscAI	CASTG	2 cut(s)	75, 1479
TseI	GCWGC	2 cut(s)	866, 1283
TspDTI	ATGAA	8 cut(s)	91, 347, 404, 543, 584, 710, 1169, 1469
TspRI	CASTG	2 cut(s)	75, 1479
VneI	GTGCAC	1 cut(s)	684
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	4 cut(s)	411, 531, 1424, 1464
XceI	RCATGY	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	5 cut(s)	342, 641, 843, 1229, 1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.