Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

41443773 .. 41451734

Gene Structure 7962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCTTTAGCCCAACGTTGCACCAACATGCACACTCTCAAACCCACCCACGCCATCTTCATAAGCGACGGCCTCCACCTCAACAACTACGCCGTCAGCAAACTCATCGCCTTCTGCGCGCTCTCCGACTCCGGCAGTCTCCGATACGCCTCTCTCCTCTTCAACCAAGTCCAGACCCCCAACACCTACATGTACAACACCCTGATCAGAGCCCACTCCACCAGCTCCGACCCTCATCTGGCCATGCATTGCTTCCGGCATATGTTAAACCAGAGCGACTTAGAACCCGATAATTTTACGTTTCATTTCGTGATTTCGTCATCTTGGGTTGTGCAGATTCATAGTTGGGTGGTCAAGAATGGGATGGTTATAGTGGATGCTCATGTTCAGACTGCGCTTCTGAGGTTGTATGCGGAATGCAGGGTTTTAGGGGATGCGCACAAGGTGTTCCATGAAATTTCTGAGACAGATATGACACAGTGGAATGTGATTATGAATGGGTATGTGAACCCTGATGACTTTTGTGTGGCTGCAGGGCTCGCGGCGTGTGCTCATTTGGGGGCTCTTTGGCAGGGAAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGGTTGGATTCGGATGTGTTTATTGGGACGGCGCTTGTTGATATGTATGCCAAGTGTGGTTGTATTGATTTAGCTGTCGAGGCGAAAAGGAATGTGGTGTCGTGGTCAGCCATGATTGGAGCGTTTGGGGTGCATCGTTATGCGGCGGAAGCAAGTTCTTTCTTGGAGAGAATGCAGGTAGATGATGGAATCAAGCCTGATGGTGTTGCCCTTCTTGGAGTTCTAATGGCATGTACTCATGCAGGATTGCTTGAGAAGGGTAAGGCTCTGTTGGACAACTGTTGCTCAATATGGATTGTGCCCAAACACGAACATTATAGTTGTGTTATAGACTTGCTGTGTAAGGCAGGTCGATTATGTGATGCATTTGAGCTTATTAGAAGAATACCCATGAAGCTGCTTGCTTCTGTGTGGGGTGCTTTATTAAGTGGGTGCCGTATCCATAATAATGTAGATCAGAAGACACCAGGCTACAACATGCTAGAGGTGGCTGGGAAGGTTAATGAGTTTGTTTCAGGAGATGTATTCCATTCACATCGTGTTCAGATATGTGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

389

Amino Acids

43.29

Weight (kDa)

6.71

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	60 - 106	1.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	438
Acc36I	ACCTGC	2 cut(s)	775, 947
AccB1I	GGYRCC	1 cut(s)	1041
AccII	CGCG	2 cut(s)	119, 542
AciI	CCGC	4 cut(s)	413, 542, 752, 755
AclI	AACGTT	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	456
AdeI	CACNNNGTG	2 cut(s)	445, 1148
AfaI	GTAC	2 cut(s)	194, 844
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	1075
AluBI	AGCT	5 cut(s)	225, 683, 982, 1006, 1167
AluI	AGCT	5 cut(s)	225, 683, 982, 1006, 1167
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	143, 458
AoxI	GGCC	2 cut(s)	70, 240
ApeKI	GCWGC	2 cut(s)	530, 1006
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	5 cut(s)	119, 121, 397, 439, 643
BaeGI	GKGCMC	1 cut(s)	912
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	1041
BanII	GRGCYC	3 cut(s)	214, 540, 565
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	517, 993
BccI	CCATC	4 cut(s)	62, 358, 788, 803
BceAI	ACGGC	4 cut(s)	77, 85, 654, 1029
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	1077
BciVI	GTATCC	1 cut(s)	1058
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	143, 458
BfaI	CTAG	1 cut(s)	1091
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	644
BfuAI	ACCTGC	2 cut(s)	775, 947
BfuI	GTATCC	1 cut(s)	1058
BisI	GCNGC	4 cut(s)	531, 543, 753, 1007
BlsI	GCNGC	4 cut(s)	532, 544, 754, 1008
Bme1390I	CCNGG	1 cut(s)	1077
BmiI	GGNNCC	1 cut(s)	1043
BmrFI	CCNGG	1 cut(s)	1077
BmsI	GCATC	4 cut(s)	367, 424, 751, 961
BpiI	GAAGAC	1 cut(s)	1076
BpuEI	CTTGAG	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	1077
BseGI	GGATG	4 cut(s)	369, 382, 439, 628
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	392, 453
BsePI	GCGCGC	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	912
BseXI	GCAGC	2 cut(s)	517, 993
BseYI	CCCAGC	1 cut(s)	1100
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	119, 542
BshFI	GGCC	2 cut(s)	72, 242
BshNI	GGYRCC	1 cut(s)	1041
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	132, 256
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	143, 458
BsmFI	GGGAC	1 cut(s)	649
BsmI	GAATGC	2 cut(s)	422, 786
BsnI	GGCC	2 cut(s)	72, 242
Bsp1286I	GDGCHC	5 cut(s)	214, 540, 553, 565, 912
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	204, 1063
BspACI	CCGC	4 cut(s)	413, 542, 752, 755
BspANI	GGCC	2 cut(s)	72, 242
BspCNI	CTCAG	2 cut(s)	393, 454
BspFNI	CGCG	2 cut(s)	119, 542
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	1043
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	2 cut(s)	775, 947
BspT107I	GGYRCC	1 cut(s)	1041
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	192
BssHII	GCGCGC	1 cut(s)	117
BssMI	GATC	2 cut(s)	204, 1063
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	2 cut(s)	480, 890
Bst6I	CTCTTC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	119, 540, 1011
BstDEI	CTNAG	3 cut(s)	280, 401, 462
BstF5I	GGATG	4 cut(s)	369, 382, 439, 628
BstFNI	CGCG	2 cut(s)	119, 542
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	5 cut(s)	119, 121, 397, 439, 643
BstKTI	GATC	2 cut(s)	207, 1066
BstMAI	GTCTC	2 cut(s)	143, 458
BstMBI	GATC	2 cut(s)	204, 1063
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 539, 548, 689, 758
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	4 cut(s)	31, 193, 843, 1090
BstSCI	CCNGG	1 cut(s)	1075
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	912
BstUI	CGCG	2 cut(s)	119, 542
BstV1I	GCAGC	2 cut(s)	517, 993
BstV2I	GAAGAC	1 cut(s)	1076
BsuI	GTATCC	1 cut(s)	1058
BsuRI	GGCC	2 cut(s)	72, 242
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	369, 382, 439, 628
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	2 cut(s)	775, 947
Cac8I	GCNNGC	3 cut(s)	119, 540, 1011
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	5 cut(s)	119, 121, 397, 439, 643
Csp6I	GTAC	2 cut(s)	193, 843
CviQI	GTAC	2 cut(s)	193, 843
DdeI	CTNAG	3 cut(s)	280, 401, 462
DpnI	GATC	2 cut(s)	206, 1065
DpnII	GATC	2 cut(s)	204, 1063
DraIII	CACNNNGTG	2 cut(s)	445, 1148
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	770
Eco24I	GRGCYC	3 cut(s)	214, 540, 565
EcoRII	CCWGG	1 cut(s)	1075
EcoT22I	ATGCAT	2 cut(s)	249, 976
EcoT38I	GRGCYC	3 cut(s)	214, 540, 565
FaqI	GGGAC	1 cut(s)	649
FauNDI	CATATG	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	531, 543, 753, 1007
FokI	GGATG	4 cut(s)	376, 389, 446, 635
FriOI	GRGCYC	3 cut(s)	214, 540, 565
Fsp4HI	GCNGC	4 cut(s)	531, 543, 753, 1007
FspAI	RTGCGCAY	1 cut(s)	438
FspBI	CTAG	1 cut(s)	1091
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	5 cut(s)	118, 120, 396, 438, 642
GluI	GCNGC	4 cut(s)	531, 543, 753, 1007
GsaI	CCCAGC	1 cut(s)	1104
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	2 cut(s)	72, 242
HapII	CCGG	2 cut(s)	132, 256
HhaI	GCGC	5 cut(s)	119, 121, 397, 439, 643
Hin6I	GCGC	5 cut(s)	117, 119, 395, 437, 641
HinP1I	GCGC	5 cut(s)	117, 119, 395, 437, 641
HinfI	GANTC	5 cut(s)	128, 337, 583, 617, 798
HpaII	CCGG	2 cut(s)	132, 256
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188III	TCNNGA	5 cut(s)	172, 310, 355, 587, 1125
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	121, 830, 859, 1099
HpyCH4III	ACNGT	2 cut(s)	480, 890
HpyCH4IV	ACGT	2 cut(s)	16, 299
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 539, 548, 689, 758
HpyF3I	CTNAG	3 cut(s)	280, 401, 462
HpySE526I	ACGT	2 cut(s)	16, 299
HspAI	GCGC	5 cut(s)	117, 119, 395, 437, 641
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	204, 1063
LmnI	GCTCC	2 cut(s)	230, 728
Lsp1109I	GCAGC	2 cut(s)	517, 993
LweI	GCATC	4 cut(s)	367, 424, 751, 961
MaeI	CTAG	1 cut(s)	1091
MaeII	ACGT	2 cut(s)	16, 299
MalI	GATC	2 cut(s)	206, 1065
MboI	GATC	2 cut(s)	204, 1063
MboII	GAAGA	4 cut(s)	49, 151, 1002, 1081
MhlI	GDGCHC	5 cut(s)	214, 540, 553, 565, 912
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	292, 456
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	4 cut(s)	150, 252, 594, 861
MnlI	CCTC	9 cut(s)	83, 89, 160, 167, 243, 396, 597, 682, 1087
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	2 cut(s)	249, 976
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	3 cut(s)	266, 1034, 1110
MslI	CAYNNNNRTG	5 cut(s)	26, 188, 591, 747, 1056
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	2 cut(s)	132, 256
MspR9I	CCNGG	1 cut(s)	1077
Mva1269I	GAATGC	2 cut(s)	422, 786
MvaI	CCWGG	1 cut(s)	1077
MvnI	CGCG	2 cut(s)	119, 542
MwoI	GCNNNNNNNGC	5 cut(s)	116, 539, 548, 689, 758
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	2 cut(s)	204, 1063
NlaIV	GGNNCC	1 cut(s)	1043
NsbI	TGCGCA	1 cut(s)	438
NsiI	ATGCAT	2 cut(s)	249, 976
NspI	RCATGY	4 cut(s)	31, 193, 843, 1090
PagI	TCATGA	1 cut(s)	586
PauI	GCGCGC	1 cut(s)	117
PciI	ACATGT	1 cut(s)	189
PctI	GAATGC	2 cut(s)	422, 786
PfeI	GAWTC	4 cut(s)	337, 583, 617, 798
PkrI	GCNGC	4 cut(s)	532, 544, 754, 1008
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PscI	ACATGT	1 cut(s)	189
Psp1406I	AACGTT	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	1075
PspFI	CCCAGC	1 cut(s)	1100
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	1 cut(s)	1043
PstI	CTGCAG	1 cut(s)	535
PteI	GCGCGC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	194, 844
RsaNI	GTAC	2 cut(s)	193, 843
RseI	CAYNNNNRTG	5 cut(s)	26, 188, 591, 747, 1056
SaqAI	TTAA	3 cut(s)	266, 1034, 1110
SatI	GCNGC	4 cut(s)	531, 543, 753, 1007
Sau3AI	GATC	2 cut(s)	204, 1063
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	1077
SduI	GDGCHC	5 cut(s)	214, 540, 553, 565, 912
SfaNI	GCATC	4 cut(s)	367, 424, 751, 961
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	5 cut(s)	26, 188, 591, 747, 1056
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	2 cut(s)	292, 456
SsiI	CCGC	4 cut(s)	413, 542, 752, 755
SspMI	CTAG	1 cut(s)	1091
StyD4I	CCNGG	1 cut(s)	1075
TaaI	ACNGT	2 cut(s)	480, 890
TaiI	ACGT	2 cut(s)	19, 302
TaqI	TCGA	2 cut(s)	687, 961
TasI	AATT	2 cut(s)	292, 456
TatI	WGTACW	2 cut(s)	192, 842
TauI	GCSGC	2 cut(s)	545, 755
TfiI	GAWTC	4 cut(s)	337, 583, 617, 798
Tru1I	TTAA	3 cut(s)	266, 1034, 1110
Tru9I	TTAA	3 cut(s)	266, 1034, 1110
TscAI	CASTG	1 cut(s)	485
TseI	GCWGC	2 cut(s)	530, 1006
TspDTI	ATGAA	7 cut(s)	49, 293, 329, 468, 509, 575, 1016
TspRI	CASTG	1 cut(s)	485
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	4 cut(s)	31, 193, 843, 1090
XspI	CTAG	1 cut(s)	1091
Zsp2I	ATGCAT	2 cut(s)	249, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.