Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

3393549 .. 3394530

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1046400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTTGTACTCATGCAGGTCTCCTCGAGAAGGGCAAATCTCTGCTTGAAAACATGAAAACTCATTATGGCATTGTGCCGAAACATGAGCATTATAGCTGTGTTATAGACTTGCTCTGCAAGGCAGGTCAGCTAGAAGAATCACTTCAGCTTATTAGAAGAATGCGCATAAAGCCATTTGCATCTGTCTGGGGTTCTTTTCTTAGTGGGTGTCGAGACAGCGGAGAAGAAGCCGGTGCTTATGTTCAGTTATCAAACATTTATTTGGGTGCACGGAGAAGTGAAGATGCAGTTAGGATAAGGAAGATGATCGGTGAACGAGGAACCAGGAAGACACCAGGATGCAGTATGATAGAGGTGGATGGAAAAGTTAATGAGTTTGTTTCAGGAGATGTATCACATTTACACCGAGCACAGATATGTGCTATGCTGGAGCTGATATCTGCTGACTTAATTCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

155

Amino Acids

17.09

Weight (kDa)

7.65

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	24 - 56	7.8e-06	PPR repeat
E_motif	PF20431	76 - 119	1.2e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
Acc36I	ACCTGC	2 cut(s)	8, 116
AciI	CCGC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	326, 337
AluBI	AGCT	4 cut(s)	99, 133, 151, 436
AluI	AGCT	4 cut(s)	99, 133, 151, 436
Alw21I	GWGCWC	2 cut(s)	274, 415
Alw26I	GTCTC	2 cut(s)	26, 210
Alw44I	GTGCAC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	274, 415
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	2 cut(s)	328, 339
BcoDI	GTCTC	2 cut(s)	26, 210
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	2 cut(s)	8, 116
Bme1390I	CCNGG	2 cut(s)	328, 339
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	328, 339
BmsI	GCATC	3 cut(s)	191, 277, 332
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	328, 339
BseGI	GGATG	2 cut(s)	347, 367
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	274, 415
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	26, 210
BsmI	GAATGC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	274, 415
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	2 cut(s)	8, 116
BspTNI	GGTCTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	328, 339
BstDEI	CTNAG	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	347, 367
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	2 cut(s)	26, 210
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	328, 339
BstSCI	CCNGG	2 cut(s)	326, 337
BstSLI	GKGCMC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	347, 367
BveI	ACCTGC	2 cut(s)	8, 116
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	3 cut(s)	14, 55, 86
CviJI	RGCY	7 cut(s)	5, 99, 133, 151, 175, 233, 436
CviKI_1	RGCY	7 cut(s)	5, 99, 133, 151, 175, 233, 436
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	326, 337
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	3 cut(s)	17, 58, 89
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	3 cut(s)	13, 54, 85
FokI	GGATG	2 cut(s)	354, 374
FspAI	RTGCGCAY	1 cut(s)	167
FspBI	CTAG	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	452
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	17, 58, 89
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	272, 317
Hpy188III	TCNNGA	4 cut(s)	28, 215, 387, 458
Hpy8I	GTNNAC	2 cut(s)	272, 317
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	17, 120, 182, 272, 290, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	17, 58, 89
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	433
LweI	GCATC	3 cut(s)	191, 277, 332
MaeI	CTAG	1 cut(s)	134
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	6 cut(s)	149, 171, 239, 296, 316, 343
MhlI	GDGCHC	2 cut(s)	274, 415
MluCI	AATT	1 cut(s)	453
MnlI	CCTC	3 cut(s)	35, 314, 349
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	372, 452
MslI	CAYNNNNRTG	2 cut(s)	340, 418
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	328, 339
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	2 cut(s)	328, 339
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	3 cut(s)	17, 58, 89
NlaIV	GGNNCC	1 cut(s)	325
NsbI	TGCGCA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	26
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	326, 337
PspGI	CCWGG	2 cut(s)	326, 337
PspN4I	GGNNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	2 cut(s)	340, 418
SaqAI	TTAA	2 cut(s)	372, 452
Sau3AI	GATC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	328, 339
SduI	GDGCHC	2 cut(s)	274, 415
SetI	ASST	7 cut(s)	22, 101, 130, 135, 153, 360, 438
SfaNI	GCATC	3 cut(s)	191, 277, 332
Sfr274I	CTCGAG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	340, 418
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	326, 337
TaqI	TCGA	2 cut(s)	27, 214
TasI	AATT	1 cut(s)	453
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	372, 452
Tru9I	TTAA	2 cut(s)	372, 452
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.