RchiOBHm_Chr2g0169281

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
83490124 .. 83491829
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53687

Sequence Viewer

Length: 1521 bp
ATGCAGCAGACGCATATGAAGCAACTGGTCTACACCAGAATCCAAGCATGGAAGCGGTGCATGTCTTTAGCCCAACGCTGCACCAACATGCGCACCCTCAAACCCACCCACGCCGTCTTCATCACCCACGGCCTCCACCTCAACAACTACGCCGTCAGCAAACTCATCGCCTTCTGCGCCCTCTCCGACTCCGGCAATATCCGATACGCCTCTCTCCTCTTCAACCAAGTCCAGACCCCCAACACCTACATGTACAACACCCTGATCAGAGCCCACTCCACCAGCTCCGAGCCTTATCTGGCCATGCATTACTTCCGTCTTATGTTAAACCAGAGCGACTTAGAACCCGATAATTTTACGTTTCATTTCGTCATCTTGGGTTGTGTGAATTGCGCTTGGATTGTTCCGGGGAGGCAGATTCATAGTTGGGTGGTCAAGAATGGGATGGTTATAGTGGATGCTCATGTTCAGACTGCGCTTGTGAGGTTGTATGTGGAATGCAGGGTTTTAGGGGATGCACACATGGTGTTCGATGAAATTTCTGAGAGAGATATGATACAGTGGAATGTGATCATGAATGGGTATGTGAAGTGCGGCTTGGCTTCTGAGGCTTTGAGGGTTTTTCGGGATATGTTGGTGCGTGGGTTTGAGCCTGATGATTTTTGTGTGGCTACGGGGCTCGCGGCGTGTGCTCATTTGGGGGCTCTTTGGCAGGGGAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGGTTGGATTCGGATGTGTTTATTGGGACGGCACTTGTTGATATGTATGCCAAGTGTGGTTGTATTGATTTGGCTGTGGAGGTGTTTGAGGGAATGGCGAAAAGGAATGTGGTGTCGTGGTCAGCAATGATTGGAGCGTTTGGTGTGCATGGTTATGCGGCAGAAGCAATTTCTTGCTTGGAGAGAATGCAGGTAGATGATGGAATCAAGCCTGATGGTGTTGTCCTTCTTGGAGTTCTGATGGCCTGTACTCATGGAGGATTGCTTGAGAAGGGCAAGGCCCTGTTGGACAACATGAAAGCTCAATATGGGATTGTGCCCAAACACGAGCATTATAGTTGTGTTATAGACCTGCTGTGTAAAGCAGGTCGATTAAGTGATGCATTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTGTGTGGGGTGCTTTATTGAGTGGGTGCAGTATCCATAATAATGTAGATCTTGCAGAGATTGCTGTCGAACAACTTCTACAGCTAGCAAATGATGACAGGGGAGAAGAAGTCGGTGCTTATGTTCAGTTATCAAACATTTATTTAGGTGCCCGGAGAAGTGAAGATGCACTTAGGATAAGGAAGATGATTGGTGAAAAAGGAATCAAGAAGACACCAGGCTGCAGCATGCTAGAGGTGGATGGGAAGGTTAATGAGTTTGTTTCAGGAGATGTATCCCATTCACATTGTGTTCAGATTTGTACAATGTTGGATCTAATATCTGCTGACTCATTTCAGGAACTGTAA

Protein Analysis

506

Amino Acids

56.47

Weight (kDa)

6.67

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 184 - 230 1.5e-08 PPR repeat family
PPR PF01535 188 - 216 1.3e-06 PPR repeat
PPR_1 PF12854 354 - 385 2.1e-07 PPR repeat
E_motif PF20431 404 - 470 3.2e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 3 cut(s) 931, 1106, 1110
AccB1I GGYRCC 1 cut(s) 1322
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 683
AciI CCGC 5 cut(s) 55, 594, 683, 908, 1166
AclWI GGATC 1 cut(s) 1494
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 537
AdeI CACNNNGTG 2 cut(s) 526, 1463
AfaI GTAC 3 cut(s) 254, 1000, 1477
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 4 cut(s) 285, 1052, 1141, 1258
AluI AGCT 4 cut(s) 285, 1052, 1141, 1258
Alw21I GWGCWC 1 cut(s) 694
AlwI GGATC 1 cut(s) 1494
AlwNI CAGNNNCTG 1 cut(s) 1516
AoxI GGCC 4 cut(s) 130, 300, 993, 1029
ApeKI GCWGC 4 cut(s) 4, 78, 1395, 1398
ApoI RAATTY 1 cut(s) 537
Asp700I GAANNNNTTC 1 cut(s) 1248
AspLEI GCGC 4 cut(s) 93, 179, 395, 478
AspS9I GGNCC 1 cut(s) 1030
AsuC2I CCSGG 2 cut(s) 408, 1327
AsuHPI GGTGA 2 cut(s) 115, 1379
AsuNHI GCTAGC 1 cut(s) 1258
BaeGI GKGCMC 2 cut(s) 1071, 1327
BalI TGGCCA 1 cut(s) 302
BanI GGYRCC 1 cut(s) 1322
BanII GRGCYC 3 cut(s) 274, 681, 706
BauI CACGAG 1 cut(s) 1076
BbsI GAAGAC 2 cut(s) 109, 1391
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 4 cut(s) 16, 65, 1382, 1410
BccI CCATC 5 cut(s) 439, 944, 959, 985, 1409
BceAI ACGGC 4 cut(s) 98, 137, 145, 795
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 1392
BciVI GTATCC 2 cut(s) 1217, 1459
BclI TGATCA 2 cut(s) 264, 570
BcnI CCSGG 2 cut(s) 408, 1327
BfaI CTAG 2 cut(s) 1259, 1406
BfmI CTRYAG 2 cut(s) 1253, 1396
BfuAI ACCTGC 3 cut(s) 931, 1106, 1110
BfuI GTATCC 2 cut(s) 1217, 1459
BglII AGATCT 1 cut(s) 1222
BisI GCNGC 8 cut(s) 5, 79, 595, 684, 909, 1166, 1396, 1399
BlsI GCNGC 8 cut(s) 6, 80, 596, 685, 910, 1167, 1397, 1400
Bme1390I CCNGG 3 cut(s) 408, 1327, 1392
BmgT120I GGNCC 1 cut(s) 1030
BmiI GGNNCC 1 cut(s) 1324
BmrFI CCNGG 3 cut(s) 408, 1327, 1392
BmsI GCATC 4 cut(s) 448, 505, 1120, 1330
BmtI GCTAGC 1 cut(s) 1262
BpiI GAAGAC 2 cut(s) 109, 1391
BpuEI CTTGAG 1 cut(s) 1037
BpuMI CCSGG 2 cut(s) 408, 1327
BsaJI CCNNGG 2 cut(s) 127, 407
BsaXI ACNNNNNCTCC 2 cut(s) 1269, 1299
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 1392
BseDI CCNNGG 2 cut(s) 127, 407
BseGI GGATG 5 cut(s) 450, 463, 520, 769, 1420
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 2 cut(s) 534, 597
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 2 cut(s) 1071, 1327
BseXI GCAGC 4 cut(s) 16, 65, 1382, 1410
BsgI GTGCAG 2 cut(s) 64, 1222
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 4 cut(s) 132, 302, 995, 1031
BshNI GGYRCC 1 cut(s) 1322
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 3 cut(s) 192, 407, 1327
BslFI GGGAC 1 cut(s) 790
BsmFI GGGAC 1 cut(s) 790
BsmI GAATGC 3 cut(s) 503, 942, 1158
BsnI GGCC 4 cut(s) 132, 302, 995, 1031
Bsp1286I GDGCHC 6 cut(s) 274, 681, 694, 706, 1071, 1327
Bsp1407I TGTACA 2 cut(s) 252, 1475
Bsp143I GATC 4 cut(s) 264, 570, 1222, 1486
BspACI CCGC 5 cut(s) 55, 594, 683, 908, 1166
BspANI GGCC 4 cut(s) 132, 302, 995, 1031
BspCNI CTCAG 2 cut(s) 535, 598
BspFNI CGCG 1 cut(s) 683
BspHI TCATGA 2 cut(s) 573, 727
BspLI GGNNCC 1 cut(s) 1324
BspMAI CTGCAG 1 cut(s) 1400
BspMI ACCTGC 3 cut(s) 931, 1106, 1110
BspOI GCTAGC 1 cut(s) 1262
BspPI GGATC 1 cut(s) 1494
BspT107I GGYRCC 1 cut(s) 1322
BsrDI GCAATG 1 cut(s) 882
BsrGI TGTACA 2 cut(s) 252, 1475
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 127, 407
BssMI GATC 4 cut(s) 264, 570, 1222, 1486
BssSI CACGAG 1 cut(s) 1076
Bst2BI CACGAG 1 cut(s) 1076
Bst2UI CCWGG 1 cut(s) 1392
Bst4CI ACNGT 2 cut(s) 561, 1518
Bst6I CTCTTC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstAUI TGTACA 2 cut(s) 252, 1475
BstC8I GCNNGC 4 cut(s) 681, 1170, 1260, 1403
BstDEI CTNAG 4 cut(s) 340, 543, 606, 1346
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 5 cut(s) 450, 463, 520, 769, 1420
BstFNI CGCG 1 cut(s) 683
BstHHI GCGC 4 cut(s) 93, 179, 395, 478
BstKTI GATC 4 cut(s) 267, 573, 1225, 1489
BstMBI GATC 4 cut(s) 264, 570, 1222, 1486
BstMWI GCNNNNNNNGC 8 cut(s) 10, 19, 176, 608, 689, 914, 1162, 1235
BstNI CCWGG 1 cut(s) 1392
BstNSI RCATGY 4 cut(s) 64, 91, 253, 1405
BstSCI CCNGG 3 cut(s) 406, 1325, 1390
BstSFI CTRYAG 2 cut(s) 1253, 1396
BstSLI GKGCMC 2 cut(s) 1071, 1327
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 4 cut(s) 16, 65, 1382, 1410
BstV2I GAAGAC 2 cut(s) 109, 1391
BstX2I RGATCY 2 cut(s) 1222, 1486
BstYI RGATCY 2 cut(s) 1222, 1486
BsuI GTATCC 2 cut(s) 1217, 1459
BsuRI GGCC 4 cut(s) 132, 302, 995, 1031
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 5 cut(s) 450, 463, 520, 769, 1420
BtsIMutI CAGTG 1 cut(s) 566
BveI ACCTGC 3 cut(s) 931, 1106, 1110
Cac8I GCNNGC 4 cut(s) 681, 1170, 1260, 1403
CaiI CAGNNNCTG 1 cut(s) 1516
CciI TCATGA 2 cut(s) 573, 727
CfoI GCGC 4 cut(s) 93, 179, 395, 478
Cfr13I GGNCC 1 cut(s) 1030
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 253, 999, 1476
CviQI GTAC 3 cut(s) 253, 999, 1476
DdeI CTNAG 4 cut(s) 340, 543, 606, 1346
DpnI GATC 4 cut(s) 266, 572, 1224, 1488
DpnII GATC 4 cut(s) 264, 570, 1222, 1486
DraIII CACNNNGTG 2 cut(s) 526, 1463
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco24I GRGCYC 3 cut(s) 274, 681, 706
EcoO109I RGGNCCY 1 cut(s) 1030
EcoRII CCWGG 1 cut(s) 1390
EcoT22I ATGCAT 2 cut(s) 309, 1135
EcoT38I GRGCYC 3 cut(s) 274, 681, 706
FalI AAGNNNNNCTT 4 cut(s) 581, 613, 1329, 1361
FaqI GGGAC 1 cut(s) 790
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 2 cut(s) 264, 570
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 8 cut(s) 5, 79, 595, 684, 909, 1166, 1396, 1399
FokI GGATG 5 cut(s) 457, 470, 527, 776, 1427
FriOI GRGCYC 3 cut(s) 274, 681, 706
Fsp4HI GCNGC 8 cut(s) 5, 79, 595, 684, 909, 1166, 1396, 1399
FspAI RTGCGCAY 1 cut(s) 92
FspBI CTAG 2 cut(s) 1259, 1406
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 4 cut(s) 92, 178, 394, 477
GluI GCNGC 8 cut(s) 5, 79, 595, 684, 909, 1166, 1396, 1399
HaeIII GGCC 4 cut(s) 132, 302, 995, 1031
HapII CCGG 3 cut(s) 192, 407, 1327
HgaI GACGC 1 cut(s) 19
HhaI GCGC 4 cut(s) 93, 179, 395, 478
Hin6I GCGC 4 cut(s) 91, 177, 393, 476
HinP1I GCGC 4 cut(s) 91, 177, 393, 476
HinfI GANTC 8 cut(s) 39, 188, 418, 724, 758, 954, 1377, 1502
HpaII CCGG 3 cut(s) 192, 407, 1327
HphI GGTGA 2 cut(s) 115, 1379
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 8 cut(s) 232, 436, 574, 626, 728, 1381, 1440, 1511
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 181, 986, 1015, 1414
HpyCH4III ACNGT 2 cut(s) 561, 1518
HpyCH4IV ACGT 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 19, 176, 608, 689, 914, 1162, 1235
HpyF3I CTNAG 4 cut(s) 340, 543, 606, 1346
HpySE526I ACGT 1 cut(s) 359
HspAI GCGC 4 cut(s) 91, 177, 393, 476
Ksp22I TGATCA 2 cut(s) 264, 570
Kzo9I GATC 4 cut(s) 264, 570, 1222, 1486
LmnI GCTCC 2 cut(s) 290, 884
Lsp1109I GCAGC 4 cut(s) 16, 65, 1382, 1410
LweI GCATC 4 cut(s) 448, 505, 1120, 1330
MaeI CTAG 2 cut(s) 1259, 1406
MaeII ACGT 1 cut(s) 359
MalI GATC 4 cut(s) 266, 572, 1224, 1488
MboI GATC 4 cut(s) 264, 570, 1222, 1486
MboII GAAGA 7 cut(s) 109, 211, 1161, 1292, 1349, 1369, 1396
MflI RGATCY 2 cut(s) 1222, 1486
MhlI GDGCHC 6 cut(s) 274, 681, 694, 706, 1071, 1327
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 4 cut(s) 352, 388, 537, 918
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 2 cut(s) 182, 1496
MmeI TCCRAC 4 cut(s) 210, 735, 1017, 1464
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 2 cut(s) 309, 1135
MroXI GAANNNNTTC 1 cut(s) 1248
MscI TGGCCA 1 cut(s) 302
MseI TTAA 3 cut(s) 326, 1124, 1425
MslI CAYNNNNRTG 5 cut(s) 86, 248, 732, 903, 1215
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 3 cut(s) 192, 407, 1327
MspR9I CCNGG 3 cut(s) 408, 1327, 1392
Mva1269I GAATGC 3 cut(s) 503, 942, 1158
MvaI CCWGG 1 cut(s) 1392
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 8 cut(s) 10, 19, 176, 608, 689, 914, 1162, 1235
NciI CCSGG 2 cut(s) 408, 1327
NdeI CATATG 1 cut(s) 15
NdeII GATC 4 cut(s) 264, 570, 1222, 1486
NheI GCTAGC 1 cut(s) 1258
NlaIV GGNNCC 1 cut(s) 1324
NsbI TGCGCA 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 309, 1135
NspI RCATGY 4 cut(s) 64, 91, 253, 1405
PaeI GCATGC 1 cut(s) 1405
PagI TCATGA 2 cut(s) 573, 727
PciI ACATGT 1 cut(s) 249
PctI GAATGC 3 cut(s) 503, 942, 1158
PdmI GAANNNNTTC 1 cut(s) 1248
PfeI GAWTC 6 cut(s) 39, 418, 724, 758, 954, 1377
PkrI GCNGC 8 cut(s) 6, 80, 596, 685, 910, 1167, 1397, 1400
PleI GAGTC 2 cut(s) 182, 1496
PpsI GAGTC 2 cut(s) 182, 1496
PscI ACATGT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 1390
PspGI CCWGG 1 cut(s) 1390
PspN4I GGNNCC 1 cut(s) 1324
PspPI GGNCC 1 cut(s) 1030
PsrI GAACNNNNNNTAC 2 cut(s) 1236, 1268
PstI CTGCAG 1 cut(s) 1400
PstNI CAGNNNCTG 1 cut(s) 1516
PsuI RGATCY 2 cut(s) 1222, 1486
RsaI GTAC 3 cut(s) 254, 1000, 1477
RsaNI GTAC 3 cut(s) 253, 999, 1476
RseI CAYNNNNRTG 5 cut(s) 86, 248, 732, 903, 1215
SaqAI TTAA 3 cut(s) 326, 1124, 1425
SatI GCNGC 8 cut(s) 5, 79, 595, 684, 909, 1166, 1396, 1399
Sau3AI GATC 4 cut(s) 264, 570, 1222, 1486
Sau96I GGNCC 1 cut(s) 1030
SchI GAGTC 2 cut(s) 182, 1496
ScrFI CCNGG 3 cut(s) 408, 1327, 1392
SduI GDGCHC 6 cut(s) 274, 681, 694, 706, 1071, 1327
SfaNI GCATC 4 cut(s) 448, 505, 1120, 1330
SfcI CTRYAG 2 cut(s) 1253, 1396
SmiMI CAYNNNNRTG 5 cut(s) 86, 248, 732, 903, 1215
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SphI GCATGC 1 cut(s) 1405
Sse9I AATT 4 cut(s) 352, 388, 537, 918
SsiI CCGC 5 cut(s) 55, 594, 683, 908, 1166
SspMI CTAG 2 cut(s) 1259, 1406
StyD4I CCNGG 3 cut(s) 406, 1325, 1390
TaaI ACNGT 2 cut(s) 561, 1518
TaiI ACGT 1 cut(s) 362
TaqI TCGA 3 cut(s) 531, 1120, 1242
TasI AATT 4 cut(s) 352, 388, 537, 918
TatI WGTACW 3 cut(s) 252, 998, 1475
TauI GCSGC 4 cut(s) 597, 686, 911, 1168
TfiI GAWTC 6 cut(s) 39, 418, 724, 758, 954, 1377
Tru1I TTAA 3 cut(s) 326, 1124, 1425
Tru9I TTAA 3 cut(s) 326, 1124, 1425
TscAI CASTG 1 cut(s) 566
TseI GCWGC 4 cut(s) 4, 78, 1395, 1398
TspDTI ATGAA 9 cut(s) 32, 109, 353, 410, 549, 590, 716, 1061, 1175
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 566
XapI RAATTY 1 cut(s) 537
XceI RCATGY 4 cut(s) 64, 91, 253, 1405
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 1248
XspI CTAG 2 cut(s) 1259, 1406
Zsp2I ATGCAT 2 cut(s) 309, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.