Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

66883343 .. 66889020

Gene Structure 5678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0539200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTTTTGAGGTTTGGTTTATCTTTGGCTTTGGAATTCGAGTGATTGATTGGAAGGGTTGCAAGATAGAGGTAAGTGTAGTAGCAAGTGTAGTAGCTACCTCTGTCTTTCTCCGCCTCGAAGACTCAGACAACTGCGGCTCTTCAATCTCACAGGACTGGGAATCCGTCGTAATCAGGAAGAAGGTACCCAACGCCGCCGCCAAGAAGTGCGAGAAAGCCGTCAACGCTGCTTGCCGTGCCGGTGCCGAGATCGAAACCGTCGAGAAAGGTGTGTATTTAGTGGTGATACAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

99

Amino Acids

10.83

Weight (kDa)

5.45

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	52 - 90	5.6e-11	Multiprotein bridging factor 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	2 cut(s)	187, 245
AciI	CCGC	4 cut(s)	115, 138, 198, 201
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	147
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	36
Asp718I	GGTACC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	187, 245
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	217
BceAI	ACGGC	2 cut(s)	206, 222
BisI	GCNGC	4 cut(s)	139, 198, 201, 231
BlsI	GCNGC	4 cut(s)	140, 199, 202, 232
BmiI	GGNNCC	2 cut(s)	189, 247
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	217
BshNI	GGYRCC	2 cut(s)	187, 245
BsiSI	CCGG	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	4 cut(s)	115, 138, 198, 201
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	189, 247
BspQI	GCTCTTC	1 cut(s)	148
BspT107I	GGYRCC	2 cut(s)	187, 245
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 239
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	188
CviJI	RGCY	5 cut(s)	5, 30, 98, 141, 221
CviKI_1	RGCY	5 cut(s)	5, 30, 98, 141, 221
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	139, 198, 201, 231
Fsp4HI	GCNGC	4 cut(s)	139, 198, 201, 231
GluI	GCNGC	4 cut(s)	139, 198, 201, 231
HapII	CCGG	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	125, 164
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	178, 265
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	173, 266
HpyAV	CCTTC	2 cut(s)	49, 178
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 239
HpyF3I	CTNAG	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	252
LguI	GCTCTTC	1 cut(s)	148
LpnPI	CCDG	4 cut(s)	140, 145, 163, 256
Lsp1109I	GCAGC	1 cut(s)	217
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	3 cut(s)	134, 135, 193
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	4, 64, 112, 128
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	227, 239
NdeII	GATC	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	189, 247
NmeAIII	GCCGAG	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	140, 199, 202, 232
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	189, 247
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	148
SatI	GCNGC	4 cut(s)	139, 198, 201, 231
Sau3AI	GATC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	119
SetI	ASST	6 cut(s)	15, 75, 100, 104, 189, 274
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	4 cut(s)	115, 138, 198, 201
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	4 cut(s)	40, 120, 255, 264
TasI	AATT	1 cut(s)	36
TauI	GCSGC	3 cut(s)	141, 200, 203
TfiI	GAWTC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	157
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.