Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Forward (+)

83668203 .. 83669171

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG610300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATACAGTGGAATGTGATCATGAATGGGTATGTGAAGTGTGGCTTGGCTTCTGAGGCTTTGAGGGTATTTCGGGATATGTTGGTGCGTGGGTTTGAGCCTGATGATTTTTGTGTGGCTACGGGGCTCGCGGCGTGTGCTCATTTGGGGGCTCTTTGGCAGGGGAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGGTTGGATTTGGATGTGTTTATTGGGACGGCGCTTGTTGATATGTATGCCAAGTGTGGTTGTATTGATCTGGCTGTGGAGATGTTTGAGGGGATGGCGAAAAGGAATATGGTGTCGTGGTCAGCAATGATTGGAGCGTTTGGGGTGCATGGTTATGCGGCAGAAGCAATTTCTTGCTTGGAGAGAATGCAGGTAGATGATGGAATCAAGCCTGATGGTGTTGTCCTTCTTGGAGTACTGATGGCCTGTACTCATGCAGGATTGCTTGAGAAGGGCAAAGCTCTGTTGGACAACATGAAAGCTCAATATGGGATTGTGCCCAAACACGAGCATTATAGTTGTGTTATAGACCTGCTGTGTAAATCAGGTCGATTAAGTGATGCATTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTGTGTGGGGTGCTTTATTGAGTGGGTGCCGTATCCACAATAATGTAGATCTTGCAGAGATTGCTGTCGAACAACTTCTACAGCTAGCAAATGATGACAGGGGAGAAGAAGTCGGTGCTTATGTTCAGTTATCAAACATTTATTTAGGTGCCCGGAGAAGTGAAGATGCACTTAGGATAAGGAAGATGATTGGTGAAAAAGGAATCAAGAAGACACCAGGCTGCAGCATGCTAGAGGTGGATGGGAAGGTTAATGAGTTTGTTTCAGGAGATTTATCCCATTCACATCGTGTTCAGATATGTACAATGTTGGATCTAATATCTGCCGACTCATTTCAGGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

322

Amino Acids

35.47

Weight (kDa)

6.01

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	4 - 32	7.2e-07	PPR repeat
PPR_2	PF13041	4 - 46	1.8e-08	PPR repeat family
PPR_1	PF12854	170 - 201	4.6e-07	PPR repeat
E_motif	PF20431	220 - 286	1.6e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	379, 558
AccB1I	GGYRCC	2 cut(s)	648, 770
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	131, 356, 614
AclWI	GGATC	1 cut(s)	942
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	3 cut(s)	435, 448, 925
AjnI	CCWGG	1 cut(s)	838
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	479, 500, 589, 706
AluI	AGCT	4 cut(s)	479, 500, 589, 706
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	942
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	843, 846
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	827
AsuNHI	GCTAGC	1 cut(s)	706
BaeGI	GKGCMC	2 cut(s)	519, 775
BanI	GGYRCC	2 cut(s)	648, 770
BanII	GRGCYC	2 cut(s)	129, 154
BauI	CACGAG	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	830, 858
BccI	CCATC	5 cut(s)	286, 392, 407, 433, 857
BceAI	ACGGC	2 cut(s)	243, 636
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	775
BfaI	CTAG	2 cut(s)	707, 854
BfmI	CTRYAG	2 cut(s)	701, 844
BfoI	RGCGCY	1 cut(s)	233
BfuAI	ACCTGC	2 cut(s)	379, 558
BfuI	GTATCC	1 cut(s)	665
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	5 cut(s)	132, 357, 614, 844, 847
BlsI	GCNGC	5 cut(s)	133, 358, 615, 845, 848
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	775, 840
BmiI	GGNNCC	3 cut(s)	650, 772, 963
BmrFI	CCNGG	2 cut(s)	775, 840
BmsI	GCATC	2 cut(s)	568, 778
BmtI	GCTAGC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	840
BseGI	GGATG	3 cut(s)	217, 297, 868
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	2 cut(s)	519, 775
BseXI	GCAGC	2 cut(s)	830, 858
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	2 cut(s)	648, 770
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	775
BslFI	GGGAC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	2 cut(s)	390, 606
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	5 cut(s)	129, 142, 154, 519, 775
Bsp1407I	TGTACA	1 cut(s)	923
Bsp143I	GATC	4 cut(s)	18, 265, 670, 934
BspACI	CCGC	3 cut(s)	131, 356, 614
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	2 cut(s)	21, 175
BspLI	GGNNCC	3 cut(s)	650, 772, 963
BspMAI	CTGCAG	1 cut(s)	848
BspMI	ACCTGC	2 cut(s)	379, 558
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	942
BspT107I	GGYRCC	2 cut(s)	648, 770
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	923
BssMI	GATC	4 cut(s)	18, 265, 670, 934
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	2 cut(s)	9, 966
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	923
BstC8I	GCNNGC	4 cut(s)	129, 618, 708, 851
BstDEI	CTNAG	2 cut(s)	54, 794
BstF5I	GGATG	3 cut(s)	217, 297, 868
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	21, 268, 673, 937
BstMBI	GATC	4 cut(s)	18, 265, 670, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 137, 362, 610, 683
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	773, 838
BstSFI	CTRYAG	2 cut(s)	701, 844
BstSLI	GKGCMC	2 cut(s)	519, 775
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	830, 858
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	2 cut(s)	670, 934
BstYI	RGATCY	2 cut(s)	670, 934
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	217, 297, 868
BtsIMutI	CAGTG	1 cut(s)	14
BveI	ACCTGC	2 cut(s)	379, 558
Cac8I	GCNNGC	4 cut(s)	129, 618, 708, 851
CciI	TCATGA	2 cut(s)	21, 175
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	434, 447, 924
CviAII	CATG	7 cut(s)	22, 176, 347, 452, 493, 607, 850
CviQI	GTAC	3 cut(s)	434, 447, 924
DdeI	CTNAG	2 cut(s)	54, 794
DpnI	GATC	4 cut(s)	20, 267, 672, 936
DpnII	GATC	4 cut(s)	18, 265, 670, 934
DraIII	CACNNNGTG	1 cut(s)	911
Eco24I	GRGCYC	2 cut(s)	129, 154
EcoRII	CCWGG	1 cut(s)	838
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	2 cut(s)	129, 154
FaeI	CATG	7 cut(s)	25, 179, 350, 455, 496, 610, 853
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 777, 809
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	7 cut(s)	21, 175, 346, 451, 492, 606, 849
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	5 cut(s)	132, 357, 614, 844, 847
FokI	GGATG	3 cut(s)	224, 304, 875
FriOI	GRGCYC	2 cut(s)	129, 154
Fsp4HI	GCNGC	5 cut(s)	132, 357, 614, 844, 847
FspBI	CTAG	2 cut(s)	707, 854
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	5 cut(s)	132, 357, 614, 844, 847
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	775
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	7 cut(s)	25, 179, 350, 455, 496, 610, 853
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	172, 402, 825, 950
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	1 cut(s)	827
Hpy188I	TCNGA	2 cut(s)	55, 918
Hpy188III	TCNNGA	6 cut(s)	22, 74, 176, 829, 888, 959
HpyAV	CCTTC	3 cut(s)	434, 463, 862
HpyCH4III	ACNGT	2 cut(s)	9, 966
HpyCH4V	TGCA	7 cut(s)	346, 388, 455, 581, 677, 791, 846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 137, 362, 610, 683
HpyF3I	CTNAG	2 cut(s)	54, 794
Hsp92II	CATG	7 cut(s)	25, 179, 350, 455, 496, 610, 853
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 265, 670, 934
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	2 cut(s)	830, 858
LweI	GCATC	2 cut(s)	568, 778
MaeI	CTAG	2 cut(s)	707, 854
MalI	GATC	4 cut(s)	20, 267, 672, 936
MboI	GATC	4 cut(s)	18, 265, 670, 934
MboII	GAAGA	5 cut(s)	609, 740, 797, 817, 844
MflI	RGATCY	2 cut(s)	670, 934
MhlI	GDGCHC	5 cut(s)	129, 142, 154, 519, 775
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	3 cut(s)	183, 465, 912
MnlI	CCTC	5 cut(s)	49, 57, 186, 280, 850
Mph1103I	ATGCAT	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	2 cut(s)	572, 873
MslI	CAYNNNNRTG	3 cut(s)	180, 351, 663
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	775, 840
Mva1269I	GAATGC	2 cut(s)	390, 606
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	56, 137, 362, 610, 683
NciI	CCSGG	1 cut(s)	775
NdeII	GATC	4 cut(s)	18, 265, 670, 934
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	7 cut(s)	25, 179, 350, 455, 496, 610, 853
NlaIV	GGNNCC	3 cut(s)	650, 772, 963
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	853
PaeI	GCATGC	1 cut(s)	853
PagI	TCATGA	2 cut(s)	21, 175
PctI	GAATGC	2 cut(s)	390, 606
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	172, 402, 825
PkrI	GCNGC	5 cut(s)	133, 358, 615, 845, 848
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
Psp6I	CCWGG	1 cut(s)	838
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	3 cut(s)	650, 772, 963
PsrI	GAACNNNNNNTAC	2 cut(s)	684, 716
PstI	CTGCAG	1 cut(s)	848
PsuI	RGATCY	2 cut(s)	670, 934
RsaI	GTAC	3 cut(s)	435, 448, 925
RsaNI	GTAC	3 cut(s)	434, 447, 924
RseI	CAYNNNNRTG	3 cut(s)	180, 351, 663
SaqAI	TTAA	2 cut(s)	572, 873
SatI	GCNGC	5 cut(s)	132, 357, 614, 844, 847
Sau3AI	GATC	4 cut(s)	18, 265, 670, 934
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	2 cut(s)	775, 840
SduI	GDGCHC	5 cut(s)	129, 142, 154, 519, 775
SfaNI	GCATC	2 cut(s)	568, 778
SfcI	CTRYAG	2 cut(s)	701, 844
SmiMI	CAYNNNNRTG	3 cut(s)	180, 351, 663
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	3 cut(s)	131, 356, 614
SspMI	CTAG	2 cut(s)	707, 854
StyD4I	CCNGG	2 cut(s)	773, 838
TaaI	ACNGT	2 cut(s)	9, 966
TaqI	TCGA	2 cut(s)	568, 690
TasI	AATT	1 cut(s)	366
TatI	WGTACW	3 cut(s)	433, 446, 923
TauI	GCSGC	3 cut(s)	134, 359, 616
TfiI	GAWTC	3 cut(s)	172, 402, 825
Tru1I	TTAA	2 cut(s)	572, 873
Tru9I	TTAA	2 cut(s)	572, 873
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	2 cut(s)	843, 846
TspDTI	ATGAA	4 cut(s)	38, 164, 509, 623
TspRI	CASTG	1 cut(s)	14
XceI	RCATGY	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	707, 854
ZrmI	AGTACT	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.