Prupe.3G272900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
25286019 .. 25288011
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G272900.1

Sequence Viewer

Length: 1512 bp
ATGAGCCGGTTCTTCTGCAACAGTAGCATACAAGCATGGAAGCGATGCATGTCTTTAGCACAAGGCTGCAGCAACATGCGCAAACTCAAAGCCACCCACGCCATCTTCATCACCAATGGCCTCCACCTCAACAACTACGCCATCAGCAAGCTCATCGCCTTCTGCGCGCTATCGAACTCTGGTGACCTTTCGTATGCGTCTCTTCTGTTCAACCAAATCCAGACCCCAAATTCTTACCTGTACAATACCCTCATCAGAGCCTACTCTCGCAGTTCTCAGCCTCATTTGGCTGTGCATTATTTCCTTCTCATGTTGAAACAGAGCAGCTTGGGACCCGATAATTATACTTTCAACTTTGTCATCTTGGCTTGCGCAAATTGCTCTTGGCTAGTTTCGGGCAGGCAAATTCACAATTGGGTTGTTAAAAATGGGTTGTTTTTAGTGGATGCTCATGTTCAGACAGCCCTTGTTAGACTTTATGCCGAGTGCAAGGTTTTGGATGATTCCAAGAAGGTGTTTGATGAAATTCCTGAGAGAGATGTTATACAGTGGAATGTTCTTATGAATGGGTATGTTAGGTGTGGTTTGGCTTCTGAGGCTTTGAAGGTTTTCCGGGATATGTTGGTAACTGGGTTTGAGCCTGATAACTTCTGTGTAGCTACTGGGCTAGCGGCTTGTGCTCATTTGGGGGCTCTTCGGCAGGGGAAGTGGATTGATGAGTATGTTAAAAAGAGGACAGGGTTGAAGTCAGATGTGTTTATCGGGACTGCGCTTGTTGATATGTATGCCAAGTGTGGTTGTATAGATTTGGCTGTGGAAGCCTTTGAGGGAATGCCAAAAAGGAATGTGGTCTCATGGGCAGCTATGATTGGGGGGTTTGCAGCACATGGATGTGCAACTAATGCAATTCATAGCTTGGAGAGAATGCAAGTGGATGATGGTCTAAGGCCCGACGGGGTCGTCCTTCTTGTAGTGCTAATGGCTTGTACTCATGCAGGTCTCCTGGAGAAGGGTAAGCTTCTATTAGACAACATGAAAACTCAATACGGGATTGTGCCCAAACATGAGCATTATAGCTGTGTTATAGACTTGCTCTGTAAGGCAGGTCGGTTAAATGAAGCACTTAAGCTTATCAGAAAAATGCCCATGAAGCCACTTGCTTCTGTCTGGGGTGCTTTACTGAGTGGGTGCCGAATCCATAATAATGTAGATCTTGCAGAGCTTGCTGTTAAAGAACTTCTACAGCTAGAAAATGATGTCAGGGGAGAGGAAGTTGGTGCTTATGTTCAGTTATCAAACATTTATTTGGGTGCACGGAGAGGTGAAGATGCAATTAGGATACGGAAGATGATCGGTGAAAGTGGAATCAAGAAGACACCAGGATGCAGTATGATAGAGGTGGATGGGAAGGTTAATGAGTTTGTTTCAGGAGACGTATCACATTCACATCAAGCATGGATATGCGCAATGCTGGACCTAATATGTGCTGACTCAATTCAGGACCCTTTCTAG

Protein Analysis

504

Amino Acids

55.7

Weight (kDa)

8.29

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 959
Acc16I TGCGCA 3 cut(s) 80, 373, 1465
Acc36I ACCTGC 2 cut(s) 986, 1094
AccB1I GGYRCC 1 cut(s) 1188
AccII CGCG 1 cut(s) 167
AciI CCGC 1 cut(s) 671
AcsI RAATTY 3 cut(s) 229, 405, 525
AfaI GTAC 2 cut(s) 242, 988
AfiI CCNNNNNNNGG 1 cut(s) 1009
AflII CTTAAG 1 cut(s) 1124
AgsI TTSAA 5 cut(s) 211, 316, 352, 604, 745
AjnI CCWGG 2 cut(s) 1002, 1378
Alw21I GWGCWC 2 cut(s) 682, 1315
Alw26I GTCTC 4 cut(s) 204, 856, 1004, 1425
Alw44I GTGCAC 1 cut(s) 1311
AoxI GGCC 2 cut(s) 118, 947
ApaLI GTGCAC 1 cut(s) 1311
ApeKI GCWGC 5 cut(s) 66, 69, 324, 860, 881
ApoI RAATTY 3 cut(s) 229, 405, 525
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 6 cut(s) 81, 167, 169, 374, 772, 1466
AspS9I GGNCC 4 cut(s) 332, 948, 1474, 1501
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 103, 194, 1334, 1367
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 3 cut(s) 332, 1474, 1501
BaeGI GKGCMC 2 cut(s) 1059, 1315
BanI GGYRCC 1 cut(s) 1188
BanII GRGCYC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 1379
Bbv12I GWGCWC 2 cut(s) 682, 1315
BbvI GCAGC 5 cut(s) 53, 81, 336, 872, 893
BccI CCATC 4 cut(s) 110, 149, 932, 1397
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 1004, 1380
BciVI GTATCC 1 cut(s) 1332
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 4 cut(s) 204, 856, 1004, 1425
BfaI CTAG 4 cut(s) 389, 668, 1247, 1510
BfmI CTRYAG 2 cut(s) 67, 1241
BfrI CTTAAG 1 cut(s) 1124
BfuAI ACCTGC 2 cut(s) 986, 1094
BfuI GTATCC 1 cut(s) 1332
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 6 cut(s) 67, 70, 325, 672, 861, 882
BlsI GCNGC 6 cut(s) 68, 71, 326, 673, 862, 883
Bme1390I CCNGG 3 cut(s) 614, 1004, 1380
Bme18I GGWCC 3 cut(s) 332, 1474, 1501
BmgT120I GGNCC 4 cut(s) 332, 948, 1474, 1501
BmiI GGNNCC 4 cut(s) 333, 334, 1190, 1503
BmrFI CCNGG 3 cut(s) 614, 1004, 1380
BmrI ACTGGG 2 cut(s) 639, 672
BmsI GCATC 4 cut(s) 35, 436, 1318, 1373
BmtI GCTAGC 1 cut(s) 671
BmuI ACTGGG 2 cut(s) 639, 672
BpiI GAAGAC 1 cut(s) 1379
BpmI CTGGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 614
BsaI GGTCTC 2 cut(s) 856, 1004
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bsc4I CCNNNNNNNGG 1 cut(s) 1009
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 2 cut(s) 634, 667
Bse3DI GCAATG 1 cut(s) 1473
BseBI CCWGG 2 cut(s) 1004, 1380
BseGI GGATG 6 cut(s) 451, 505, 896, 940, 1388, 1408
BseLI CCNNNNNNNGG 1 cut(s) 1009
BseMI GCAATG 1 cut(s) 1473
BseMII CTCAG 4 cut(s) 290, 522, 585, 1172
BseNI ACTGG 2 cut(s) 634, 667
BsePI GCGCGC 1 cut(s) 165
BseSI GKGCMC 2 cut(s) 1059, 1315
BseXI GCAGC 5 cut(s) 53, 81, 336, 872, 893
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 120, 949
BshNI GGYRCC 1 cut(s) 1188
BsiHKAI GWGCWC 2 cut(s) 682, 1315
BsiSI CCGG 2 cut(s) 7, 613
BslFI GGGAC 2 cut(s) 345, 778
BslI CCNNNNNNNGG 1 cut(s) 1009
BsmAI GTCTC 4 cut(s) 204, 856, 1004, 1425
BsmBI CGTCTC 2 cut(s) 204, 1425
BsmFI GGGAC 2 cut(s) 345, 778
BsmI GAATGC 2 cut(s) 837, 930
BsnI GGCC 2 cut(s) 120, 949
Bso31I GGTCTC 2 cut(s) 856, 1004
Bsp1286I GDGCHC 4 cut(s) 682, 694, 1059, 1315
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 2 cut(s) 1210, 1350
BspACI CCGC 1 cut(s) 671
BspANI GGCC 2 cut(s) 120, 949
BspCNI CTCAG 4 cut(s) 289, 523, 586, 1173
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 4 cut(s) 333, 334, 1190, 1503
BspMAI CTGCAG 1 cut(s) 71
BspMI ACCTGC 2 cut(s) 986, 1094
BspOI GCTAGC 1 cut(s) 671
BspQI GCTCTTC 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 1188
BspTI CTTAAG 1 cut(s) 1124
BspTNI GGTCTC 2 cut(s) 856, 1004
BsrDI GCAATG 1 cut(s) 1473
BsrFI RCCGGY 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 2 cut(s) 634, 667
BssAI RCCGGY 1 cut(s) 6
BssHII GCGCGC 1 cut(s) 165
BssMI GATC 2 cut(s) 1210, 1350
Bst2UI CCWGG 2 cut(s) 1004, 1380
Bst4CI ACNGT 2 cut(s) 23, 549
Bst6I CTCTTC 2 cut(s) 207, 699
BstAFI CTTAAG 1 cut(s) 1124
BstAPI GCANNNNNTGC 2 cut(s) 902, 1223
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 6 cut(s) 149, 167, 370, 401, 669, 1224
BstDEI CTNAG 5 cut(s) 276, 531, 594, 944, 1181
BstEII GGTNACC 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 6 cut(s) 451, 505, 896, 940, 1388, 1408
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 6 cut(s) 81, 167, 169, 374, 772, 1466
BstKTI GATC 2 cut(s) 1213, 1353
BstMAI GTCTC 4 cut(s) 204, 856, 1004, 1425
BstMBI GATC 2 cut(s) 1210, 1350
BstNI CCWGG 2 cut(s) 1004, 1380
BstNSI RCATGY 2 cut(s) 52, 79
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 612, 1002, 1378
BstSFI CTRYAG 2 cut(s) 67, 1241
BstSLI GKGCMC 2 cut(s) 1059, 1315
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 5 cut(s) 53, 81, 336, 872, 893
BstV2I GAAGAC 1 cut(s) 1379
BstX2I RGATCY 1 cut(s) 1210
BstYI RGATCY 1 cut(s) 1210
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 2 cut(s) 120, 949
BtgZI GCGATG 2 cut(s) 58, 139
BtsCI GGATG 6 cut(s) 451, 505, 896, 940, 1388, 1408
BtsIMutI CAGTG 1 cut(s) 554
BveI ACCTGC 2 cut(s) 986, 1094
Cac8I GCNNGC 6 cut(s) 149, 167, 370, 401, 669, 1224
CfoI GCGC 6 cut(s) 81, 167, 169, 374, 772, 1466
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 4 cut(s) 332, 948, 1474, 1501
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 241, 987
CviQI GTAC 2 cut(s) 241, 987
DdeI CTNAG 5 cut(s) 276, 531, 594, 944, 1181
DpnI GATC 2 cut(s) 1212, 1352
DpnII GATC 2 cut(s) 1210, 1350
DrdI GACNNNNNNGTC 1 cut(s) 959
DseDI GACNNNNNNGTC 1 cut(s) 959
Eam1104I CTCTTC 2 cut(s) 207, 699
EarI CTCTTC 2 cut(s) 207, 699
Eco24I GRGCYC 1 cut(s) 694
Eco31I GGTCTC 2 cut(s) 856, 1004
Eco47I GGWCC 3 cut(s) 332, 1474, 1501
Eco91I GGTNACC 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoO109I RGGNCCY 2 cut(s) 332, 1501
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 1002, 1378
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 694
Esp3I CGTCTC 2 cut(s) 204, 1425
FaqI GGGAC 2 cut(s) 345, 778
Fnu4HI GCNGC 6 cut(s) 67, 70, 325, 672, 861, 882
FokI GGATG 6 cut(s) 458, 512, 903, 947, 1395, 1415
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 6 cut(s) 67, 70, 325, 672, 861, 882
FspBI CTAG 4 cut(s) 389, 668, 1247, 1510
FspI TGCGCA 3 cut(s) 80, 373, 1465
GlaI GCGC 6 cut(s) 80, 166, 168, 373, 771, 1465
GluI GCNGC 6 cut(s) 67, 70, 325, 672, 861, 882
GsuI CTGGAG 1 cut(s) 1025
HaeIII GGCC 2 cut(s) 120, 949
HapII CCGG 2 cut(s) 7, 613
HgaI GACGC 1 cut(s) 186
HhaI GCGC 6 cut(s) 81, 167, 169, 374, 772, 1466
Hin6I GCGC 6 cut(s) 79, 165, 167, 372, 770, 1464
HinP1I GCGC 6 cut(s) 79, 165, 167, 372, 770, 1464
HindIII AAGCTT 2 cut(s) 1016, 1127
HinfI GANTC 4 cut(s) 503, 1194, 1365, 1490
HpaII CCGG 2 cut(s) 7, 613
HphI GGTGA 4 cut(s) 103, 194, 1334, 1367
Hpy166II GTNNAC 1 cut(s) 1313
Hpy188I TCNGA 5 cut(s) 257, 459, 595, 751, 1136
Hpy188III TCNNGA 6 cut(s) 220, 530, 763, 1369, 1428, 1499
Hpy8I GTNNAC 1 cut(s) 1313
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 7 cut(s) 169, 314, 505, 598, 974, 1003, 1402
HpyCH4III ACNGT 2 cut(s) 23, 549
HpyCH4IV ACGT 1 cut(s) 1434
HpyF3I CTNAG 5 cut(s) 276, 531, 594, 944, 1181
HpySE526I ACGT 1 cut(s) 1434
HspAI GCGC 6 cut(s) 79, 165, 167, 372, 770, 1464
KflI GGGWCCC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 1210, 1350
LguI GCTCTTC 1 cut(s) 699
Lsp1109I GCAGC 5 cut(s) 53, 81, 336, 872, 893
LweI GCATC 4 cut(s) 35, 436, 1318, 1373
MaeI CTAG 4 cut(s) 389, 668, 1247, 1510
MaeII ACGT 1 cut(s) 1434
MaeIII GTNAC 2 cut(s) 182, 625
MalI GATC 2 cut(s) 1212, 1352
MboI GATC 2 cut(s) 1210, 1350
MboII GAAGA 7 cut(s) 4, 97, 194, 686, 1337, 1357, 1384
MfeI CAATTG 1 cut(s) 412
MflI RGATCY 1 cut(s) 1210
MhlI GDGCHC 4 cut(s) 682, 694, 1059, 1315
MluCI AATT 9 cut(s) 229, 340, 376, 405, 412, 525, 906, 1332, 1494
MlyI GAGTC 1 cut(s) 1484
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 6 cut(s) 423, 726, 1112, 1125, 1230, 1413
MslI CAYNNNNRTG 5 cut(s) 889, 891, 1203, 1381, 1459
MspCI CTTAAG 1 cut(s) 1124
MspI CCGG 2 cut(s) 7, 613
MspR9I CCNGG 3 cut(s) 614, 1004, 1380
MunI CAATTG 1 cut(s) 412
Mva1269I GAATGC 2 cut(s) 837, 930
MvaI CCWGG 2 cut(s) 1004, 1380
MvnI CGCG 1 cut(s) 167
NciI CCSGG 1 cut(s) 614
NdeII GATC 2 cut(s) 1210, 1350
NheI GCTAGC 1 cut(s) 667
NlaIV GGNNCC 4 cut(s) 333, 334, 1190, 1503
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 3 cut(s) 80, 373, 1465
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 52, 79
PauI GCGCGC 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 699
PctI GAATGC 2 cut(s) 837, 930
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 3 cut(s) 503, 1194, 1365
PflFI GACNNNGTC 1 cut(s) 956
PfoI TCCNGGA 2 cut(s) 612, 1002
PkrI GCNGC 6 cut(s) 68, 71, 326, 673, 862, 883
PleI GAGTC 1 cut(s) 1484
PpsI GAGTC 1 cut(s) 1484
PpuMI RGGWCCY 2 cut(s) 332, 1501
Psp5II RGGWCCY 2 cut(s) 332, 1501
Psp6I CCWGG 2 cut(s) 1002, 1378
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 2 cut(s) 1002, 1378
PspN4I GGNNCC 4 cut(s) 333, 334, 1190, 1503
PspPI GGNCC 4 cut(s) 332, 948, 1474, 1501
PspPPI RGGWCCY 2 cut(s) 332, 1501
PstI CTGCAG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 1210
PsyI GACNNNGTC 1 cut(s) 956
PteI GCGCGC 1 cut(s) 165
RsaI GTAC 2 cut(s) 242, 988
RsaNI GTAC 2 cut(s) 241, 987
RseI CAYNNNNRTG 5 cut(s) 889, 891, 1203, 1381, 1459
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 6 cut(s) 423, 726, 1112, 1125, 1230, 1413
SatI GCNGC 6 cut(s) 67, 70, 325, 672, 861, 882
Sau3AI GATC 2 cut(s) 1210, 1350
Sau96I GGNCC 4 cut(s) 332, 948, 1474, 1501
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 3 cut(s) 614, 1004, 1380
SduI GDGCHC 4 cut(s) 682, 694, 1059, 1315
SfaNI GCATC 4 cut(s) 35, 436, 1318, 1373
SfcI CTRYAG 2 cut(s) 67, 1241
SinI GGWCC 3 cut(s) 332, 1474, 1501
SmiMI CAYNNNNRTG 5 cut(s) 889, 891, 1203, 1381, 1459
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
Sse9I AATT 9 cut(s) 229, 340, 376, 405, 412, 525, 906, 1332, 1494
SsiI CCGC 1 cut(s) 671
SspMI CTAG 4 cut(s) 389, 668, 1247, 1510
StyD4I CCNGG 3 cut(s) 612, 1002, 1378
TaaI ACNGT 2 cut(s) 23, 549
TaiI ACGT 1 cut(s) 1437
TaqI TCGA 1 cut(s) 173
TasI AATT 9 cut(s) 229, 340, 376, 405, 412, 525, 906, 1332, 1494
TatI WGTACW 2 cut(s) 240, 986
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 3 cut(s) 503, 1194, 1365
Tru1I TTAA 6 cut(s) 423, 726, 1112, 1125, 1230, 1413
Tru9I TTAA 6 cut(s) 423, 726, 1112, 1125, 1230, 1413
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 5 cut(s) 66, 69, 324, 860, 881
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 7 cut(s) 97, 537, 578, 899, 1049, 1131, 1163
TspGWI ACGGA 2 cut(s) 1330, 1357
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 956
Vha464I CTTAAG 1 cut(s) 1124
VneI GTGCAC 1 cut(s) 1311
VpaK11BI GGWCC 3 cut(s) 332, 1474, 1501
XagI CCTNNNNNAGG 1 cut(s) 1007
XapI RAATTY 3 cut(s) 229, 405, 525
XceI RCATGY 2 cut(s) 52, 79
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 4 cut(s) 389, 668, 1247, 1510
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.