Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

42625478 .. 42626644

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCTTTAGCCCAACGCTGCACCAACATGCACACTCTCAAACCCACCCACGCCATCTTCATAAGCCACGGCCTCCACCTCAACAACTACGCCGTCAGCAAACTCATCGCCTTCTGCGCGCTCTCTGACTCCGGCAATCTCCGATACGCCTCTCTCCTCTTCAACCAAGTCCAGACCCCCAACACCTACATGTACAACACCCTGATCAGAGCCCACTCCACCAGCTCCGACCCTCATCTGGCCATGCATTGCTTCCGGCTTATGTTAAACCAGAGCGACTTAGAACCCGATAATTTTACGTTTCATTTCGTCATCTTGGGTTGTGTAAATTGCGGTTGGATTGTTCCCGGGAGGCAGATTCATAGTTGGGTGGTCAAGAATGGGATGGTTATAGTGGATGCTCATGTTCAGACTGCGCTTCTGAGGTTGTATGCGGAATGCAGGGTTTTAGGGGATGTGCACAAGGGAAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGGTTGGATTCGGATGTGTTTATTGGGACGGCGCTTGTTGATATGTATGCCAAGTGTGGTTGTATTGATTTAGCTGTCGAGGCGAAAAGGAATGTGGTGTCGTGGTCAGCCATGATTGGAGCGTTTGGGGTGCATGGTTATGCGGCGGAAGCAAGTTCTTTCTTGGAGAGAATGCAGGTAGATGATGGAATCAAGCCTGATGGTGTTGTCCTTCTTGGAGTCCTAATGGCATGTACTCATGCAGGATTGCTTGAGAAGGGTCGATTATGTGATGCATTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTTTGTGGGGTGCTTTATTGAGTGGGTGCCGTATCCATAATAATGTAGGTCTTGCAGAGATTGCTGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

296

Amino Acids

32.8

Weight (kDa)

8.28

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	60 - 109	5.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	843
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	333, 434, 644, 647, 809
AcoI	YGGCCR	1 cut(s)	240
AfaI	GTAC	2 cut(s)	194, 736
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	225, 575, 784
AluI	AGCT	3 cut(s)	225, 575, 784
Alw21I	GWGCWC	1 cut(s)	462
Alw44I	GTGCAC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	70, 240
ApaLI	GTGCAC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	18
AspLEI	GCGC	4 cut(s)	119, 121, 418, 535
AsuC2I	CCSGG	2 cut(s)	348, 349
AvaI	CYCGRG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	4 cut(s)	62, 379, 680, 695
BceAI	ACGGC	4 cut(s)	77, 85, 546, 831
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	348, 349
BfoI	RGCGCY	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	860
BisI	GCNGC	3 cut(s)	19, 645, 809
BlsI	GCNGC	3 cut(s)	20, 646, 810
Bme1390I	CCNGG	2 cut(s)	348, 349
BmeT110I	CYCGRG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	2 cut(s)	348, 349
BmsI	GCATC	2 cut(s)	388, 763
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	2 cut(s)	348, 349
BsaJI	CCNNGG	2 cut(s)	67, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	67, 347
BseGI	GGATG	4 cut(s)	390, 403, 460, 520
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	413
BsePI	GCGCGC	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	72, 242
BshNI	GGYRCC	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	132, 256, 348
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	3 cut(s)	443, 678, 801
BsnI	GGCC	2 cut(s)	72, 242
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	214, 462
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	5 cut(s)	333, 434, 644, 647, 809
BspANI	GGCC	2 cut(s)	72, 242
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	845
BspMI	ACCTGC	1 cut(s)	667
BspT107I	GGYRCC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	67, 347
BssHII	GCGCGC	1 cut(s)	117
BssMI	GATC	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	119, 813
BstDEI	CTNAG	2 cut(s)	280, 422
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	390, 403, 460, 520
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	4 cut(s)	119, 121, 418, 535
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 581, 650, 805, 878
BstNSI	RCATGY	3 cut(s)	31, 193, 735
BstSCI	CCNGG	2 cut(s)	346, 347
BstSLI	GKGCMC	1 cut(s)	462
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	72, 242
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	390, 403, 460, 520
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	119, 813
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	4 cut(s)	119, 121, 418, 535
Cfr9I	CCCGGG	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	193, 735
CviQI	GTAC	2 cut(s)	193, 735
DdeI	CTNAG	2 cut(s)	280, 422
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	347
EcoT22I	ATGCAT	2 cut(s)	249, 778
EcoT38I	GRGCYC	1 cut(s)	214
FaqI	GGGAC	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	19, 645, 809
FokI	GGATG	4 cut(s)	397, 410, 467, 527
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	19, 645, 809
GlaI	GCGC	4 cut(s)	118, 120, 417, 534
GluI	GCNGC	3 cut(s)	19, 645, 809
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	72, 242
HapII	CCGG	3 cut(s)	132, 256, 348
HhaI	GCGC	4 cut(s)	119, 121, 418, 535
Hin6I	GCGC	4 cut(s)	117, 119, 416, 533
HinP1I	GCGC	4 cut(s)	117, 119, 416, 533
HinfI	GANTC	6 cut(s)	128, 358, 475, 509, 690, 720
HpaII	CCGG	3 cut(s)	132, 256, 348
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	7 cut(s)	127, 143, 209, 229, 411, 423, 514
Hpy188III	TCNNGA	3 cut(s)	172, 376, 479
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	121, 722, 751
HpyCH4IV	ACGT	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 581, 650, 805, 878
HpyF3I	CTNAG	2 cut(s)	280, 422
HpySE526I	ACGT	1 cut(s)	299
HspAI	GCGC	4 cut(s)	117, 119, 416, 533
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	230, 620
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	2 cut(s)	388, 763
MaeII	ACGT	1 cut(s)	299
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	3 cut(s)	49, 151, 804
MhlI	GDGCHC	2 cut(s)	214, 462
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	292, 328
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	122, 729
MmeI	TCCRAC	3 cut(s)	252, 317, 486
MnlI	CCTC	9 cut(s)	83, 89, 160, 167, 243, 345, 417, 489, 574
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	2 cut(s)	249, 778
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	5 cut(s)	26, 188, 483, 639, 858
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	3 cut(s)	132, 256, 348
MspR9I	CCNGG	2 cut(s)	348, 349
Mva1269I	GAATGC	3 cut(s)	443, 678, 801
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	116, 581, 650, 805, 878
NciI	CCSGG	2 cut(s)	348, 349
NdeII	GATC	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	845
NsiI	ATGCAT	2 cut(s)	249, 778
NspI	RCATGY	3 cut(s)	31, 193, 735
PagI	TCATGA	1 cut(s)	478
PauI	GCGCGC	1 cut(s)	117
PciI	ACATGT	1 cut(s)	189
PctI	GAATGC	3 cut(s)	443, 678, 801
PfeI	GAWTC	4 cut(s)	358, 475, 509, 690
PkrI	GCNGC	3 cut(s)	20, 646, 810
PleI	GAGTC	2 cut(s)	122, 728
PpsI	GAGTC	2 cut(s)	122, 728
PscI	ACATGT	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	845
PteI	GCGCGC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	194, 736
RsaNI	GTAC	2 cut(s)	193, 735
RseI	CAYNNNNRTG	5 cut(s)	26, 188, 483, 639, 858
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	19, 645, 809
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	122, 729
ScrFI	CCNGG	2 cut(s)	348, 349
SduI	GDGCHC	2 cut(s)	214, 462
SetI	ASST	9 cut(s)	81, 188, 227, 302, 428, 577, 681, 786, 868
SfaNI	GCATC	2 cut(s)	388, 763
SmaI	CCCGGG	1 cut(s)	349
SmiMI	CAYNNNNRTG	5 cut(s)	26, 188, 483, 639, 858
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	2 cut(s)	292, 328
SsiI	CCGC	5 cut(s)	333, 434, 644, 647, 809
StyD4I	CCNGG	2 cut(s)	346, 347
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	579, 763, 885
TasI	AATT	2 cut(s)	292, 328
TatI	WGTACW	2 cut(s)	192, 734
TauI	GCSGC	2 cut(s)	647, 811
TfiI	GAWTC	4 cut(s)	358, 475, 509, 690
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	5 cut(s)	49, 293, 350, 467, 818
TspMI	CCCGGG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	458
XceI	RCATGY	3 cut(s)	31, 193, 735
XmaI	CCCGGG	1 cut(s)	347
Zsp2I	ATGCAT	2 cut(s)	249, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.