Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Forward (+)

86276549 .. 86277439

Gene Structure 891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG634200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTGGTGCGTGGGTTTGAGCCTGATGATTTTTGTGTGGCTACCGGGCTCGCGGCGTGTGCTGATTTGGGGGCTCTTTGGCGGGGGAAGTGGATTCATGAGTATGTTAGAAAGAGGAAAGGCTTGGATTCGGATGTGTTTATTGGGACGGCGCTTGTTGATATGTATGCCAAGTGTGGTTGTATTGATTTGGCTGTGGAGGTGTTTGAGGGGATGGCGAAAAGGAATGTGGTGTCGTGGTCAGCAATGATTGGAGCGTTTGGGGTGCATGGTTATGCGGCAGAAGCAATTTCTTGCTTGGAGAGAATGGAGGTAGATGATGGAATGAAGCCTGATGGTGTTGTCCTTCTTGGAGTTCTGATGGCCTGTACTCATGCAGGATTGCTTGAGAAGGGCAAGGCTCTGTTGGACAACATGAAAGCTCAATATGGGATTGTGCCCAAACACGAGCATTATAGTTGTGTTATAGACCTGCTGTGTAAAGCAGGTCGATTAAGTGATGCATTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTGTGTGGGGTGCTTTATTGAGTGGGTGCCGTATCCATAATAATGTAGATCTTGCAGAGATTGCTGTCGAACAACTTCTACAGCTAGCAAATGATGACAGGGGAGAAGAAGTCGGTGCTTATGTTCAGTTATCAAACATTTATTTAGGTGCCCGGAGAAGTGAAGATGCACTTAGGATAAGGAAGATGATTGGTGAAAAAGGAATCAAGAAGACACCAGGCTGCAGCATGCTAGAGGTGGATGGGAAGGTTAATGAGTTTGTTTCAGGAGATGTATCCCATTCACATCGTGTTCAGATTTGTACAATGTTGGATCTAATATCTGCTGACTCATTTCAGGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

296

Amino Acids

32.4

Weight (kDa)

5.66

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	144 - 175	1.1e-07	PPR repeat
E_motif	PF20431	194 - 260	1.4e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	476, 480
AccB1I	GGYRCC	2 cut(s)	570, 692
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	53, 82, 278, 536
AclWI	GGATC	1 cut(s)	864
AdeI	CACNNNGTG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	370, 847
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	3 cut(s)	422, 511, 628
AluI	AGCT	3 cut(s)	422, 511, 628
AlwI	GGATC	1 cut(s)	864
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	765, 768
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	2 cut(s)	46, 697
AsuHPI	GGTGA	1 cut(s)	749
AsuNHI	GCTAGC	1 cut(s)	628
BaeGI	GKGCMC	2 cut(s)	441, 697
BanI	GGYRCC	2 cut(s)	570, 692
BanII	GRGCYC	2 cut(s)	51, 76
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	752, 780
BccI	CCATC	5 cut(s)	208, 314, 329, 355, 779
BceAI	ACGGC	2 cut(s)	165, 558
BciT130I	CCWGG	1 cut(s)	762
BciVI	GTATCC	2 cut(s)	587, 829
BcnI	CCSGG	2 cut(s)	46, 697
BfaI	CTAG	2 cut(s)	629, 776
BfmI	CTRYAG	2 cut(s)	623, 766
BfoI	RGCGCY	1 cut(s)	155
BfuAI	ACCTGC	2 cut(s)	476, 480
BfuI	GTATCC	2 cut(s)	587, 829
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	5 cut(s)	54, 279, 536, 766, 769
BlsI	GCNGC	5 cut(s)	55, 280, 537, 767, 770
Bme1390I	CCNGG	3 cut(s)	46, 697, 762
BmiI	GGNNCC	2 cut(s)	572, 694
BmrFI	CCNGG	3 cut(s)	46, 697, 762
BmsI	GCATC	2 cut(s)	490, 700
BmtI	GCTAGC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	761
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	46, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	762
BseGI	GGATG	3 cut(s)	139, 219, 790
BseMI	GCAATG	1 cut(s)	252
BseSI	GKGCMC	2 cut(s)	441, 697
BseXI	GCAGC	2 cut(s)	752, 780
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	2 cut(s)	570, 692
BsiSI	CCGG	2 cut(s)	45, 697
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	4 cut(s)	51, 76, 441, 697
Bsp1407I	TGTACA	1 cut(s)	845
Bsp143I	GATC	2 cut(s)	592, 856
BspACI	CCGC	4 cut(s)	53, 82, 278, 536
BspANI	GGCC	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	572, 694
BspMAI	CTGCAG	1 cut(s)	770
BspMI	ACCTGC	2 cut(s)	476, 480
BspOI	GCTAGC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	864
BspT107I	GGYRCC	2 cut(s)	570, 692
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	845
BssMI	GATC	2 cut(s)	592, 856
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	845
BstC8I	GCNNGC	4 cut(s)	51, 540, 630, 773
BstDEI	CTNAG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	139, 219, 790
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	595, 859
BstMBI	GATC	2 cut(s)	592, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 284, 532, 605
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	3 cut(s)	44, 695, 760
BstSFI	CTRYAG	2 cut(s)	623, 766
BstSLI	GKGCMC	2 cut(s)	441, 697
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	752, 780
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	592, 856
BstYI	RGATCY	2 cut(s)	592, 856
BsuI	GTATCC	2 cut(s)	587, 829
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	139, 219, 790
BveI	ACCTGC	2 cut(s)	476, 480
Cac8I	GCNNGC	4 cut(s)	51, 540, 630, 773
CaiI	CAGNNNCTG	1 cut(s)	886
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	369, 846
CviAII	CATG	6 cut(s)	98, 269, 374, 415, 529, 772
CviQI	GTAC	2 cut(s)	369, 846
DdeI	CTNAG	1 cut(s)	716
DpnI	GATC	2 cut(s)	594, 858
DpnII	GATC	2 cut(s)	592, 856
DraIII	CACNNNGTG	1 cut(s)	833
Eco24I	GRGCYC	2 cut(s)	51, 76
EcoRII	CCWGG	1 cut(s)	760
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	51, 76
FaeI	CATG	6 cut(s)	101, 272, 377, 418, 532, 775
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	6 cut(s)	97, 268, 373, 414, 528, 771
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	54, 279, 536, 766, 769
FokI	GGATG	3 cut(s)	146, 226, 797
FriOI	GRGCYC	2 cut(s)	51, 76
Fsp4HI	GCNGC	5 cut(s)	54, 279, 536, 766, 769
FspBI	CTAG	2 cut(s)	629, 776
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	54, 279, 536, 766, 769
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	2 cut(s)	45, 697
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	101, 272, 377, 418, 532, 775
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	94, 128, 747, 872
HpaII	CCGG	2 cut(s)	45, 697
HphI	GGTGA	1 cut(s)	749
Hpy188I	TCNGA	3 cut(s)	133, 360, 840
Hpy188III	TCNNGA	4 cut(s)	98, 751, 810, 881
HpyAV	CCTTC	3 cut(s)	356, 385, 784
HpyCH4III	ACNGT	1 cut(s)	888
HpyCH4V	TGCA	6 cut(s)	268, 377, 503, 599, 713, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 284, 532, 605
HpyF3I	CTNAG	1 cut(s)	716
Hsp92II	CATG	6 cut(s)	101, 272, 377, 418, 532, 775
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	592, 856
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	752, 780
LweI	GCATC	2 cut(s)	490, 700
MaeI	CTAG	2 cut(s)	629, 776
MalI	GATC	2 cut(s)	594, 858
MboI	GATC	2 cut(s)	592, 856
MboII	GAAGA	5 cut(s)	531, 662, 719, 739, 766
MflI	RGATCY	2 cut(s)	592, 856
MhlI	GDGCHC	4 cut(s)	51, 76, 441, 697
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	2 cut(s)	387, 834
MnlI	CCTC	5 cut(s)	108, 193, 202, 304, 772
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	2 cut(s)	494, 795
MslI	CAYNNNNRTG	3 cut(s)	102, 273, 585
MspI	CCGG	2 cut(s)	45, 697
MspR9I	CCNGG	3 cut(s)	46, 697, 762
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	59, 284, 532, 605
NciI	CCSGG	2 cut(s)	46, 697
NdeII	GATC	2 cut(s)	592, 856
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	6 cut(s)	101, 272, 377, 418, 532, 775
NlaIV	GGNNCC	2 cut(s)	572, 694
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	775
PaeI	GCATGC	1 cut(s)	775
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	94, 128, 747
PkrI	GCNGC	5 cut(s)	55, 280, 537, 767, 770
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	572, 694
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PstI	CTGCAG	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	592, 856
RsaI	GTAC	2 cut(s)	370, 847
RsaNI	GTAC	2 cut(s)	369, 846
RseI	CAYNNNNRTG	3 cut(s)	102, 273, 585
SaqAI	TTAA	2 cut(s)	494, 795
SatI	GCNGC	5 cut(s)	54, 279, 536, 766, 769
Sau3AI	GATC	2 cut(s)	592, 856
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	3 cut(s)	46, 697, 762
SduI	GDGCHC	4 cut(s)	51, 76, 441, 697
SfaNI	GCATC	2 cut(s)	490, 700
SfcI	CTRYAG	2 cut(s)	623, 766
SmiMI	CAYNNNNRTG	3 cut(s)	102, 273, 585
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	53, 82, 278, 536
SspMI	CTAG	2 cut(s)	629, 776
StyD4I	CCNGG	3 cut(s)	44, 695, 760
TaaI	ACNGT	1 cut(s)	888
TaqI	TCGA	2 cut(s)	490, 612
TasI	AATT	1 cut(s)	288
TatI	WGTACW	2 cut(s)	368, 845
TauI	GCSGC	3 cut(s)	56, 281, 538
TfiI	GAWTC	3 cut(s)	94, 128, 747
Tru1I	TTAA	2 cut(s)	494, 795
Tru9I	TTAA	2 cut(s)	494, 795
TseI	GCWGC	2 cut(s)	765, 768
TspDTI	ATGAA	4 cut(s)	86, 341, 431, 545
XceI	RCATGY	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	2 cut(s)	629, 776
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.