Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Reverse (-)

2164271 .. 2164681

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGCCAACTCCTCGATACTACACAGGCATGGAGCCGCTGCATGTATTTAGCACAACGCTGCACCAGCATGCTCAATCTCCGAGCCACCCACGCCGTCTTCGTCACCTCCGGCGTCCACCTCAACACCTACGCCGTCAGCAAACTCATCGCCTTCTGCGCATTATTGGACTCCGGCAACCTCCCGTATGCGTCTCTTCTCTTCGAACAAACCCAGACCCCCAATTTTTACATATACAACACTCTCATTAGAGCATATTATCGTAGTTCTGAGCCGCATTTGGCGATGTATTACTTCCATTTGATGTTAAAACAGAGCGGCTTAGAACCCGATAACTATACGTTTAATTTTGTGATACTGGGTTGCGTGAATTGTTCTTGTCTATTTTCGGGGAAGGAAATTCACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

7.63

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 124	6.1e-10	PPR repeat family
PPR_3	PF13812	74 - 123	1.1e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	3 cut(s)	37, 275, 318
AcsI	RAATTY	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	39, 60
ApoI	RAATTY	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	26, 47
BceAI	ACGGC	2 cut(s)	80, 119
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	1 cut(s)	198
BisI	GCNGC	5 cut(s)	37, 40, 61, 275, 319
BlsI	GCNGC	5 cut(s)	38, 41, 62, 276, 320
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	91
Bpu14I	TTCGAA	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	26, 47
BsgI	GTGCAG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	111, 174
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	204
BspACI	CCGC	3 cut(s)	37, 275, 318
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	201, 206
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	270, 322
BstHHI	GCGC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 92, 158
BstNSI	RCATGY	2 cut(s)	46, 73
BstV1I	GCAGC	2 cut(s)	26, 47
BstV2I	GAAGAC	1 cut(s)	91
BtgZI	GCGATG	2 cut(s)	133, 299
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	161
CseI	GACGC	2 cut(s)	103, 180
CviAII	CATG	3 cut(s)	30, 43, 70
CviJI	RGCY	5 cut(s)	6, 36, 86, 274, 321
CviKI_1	RGCY	5 cut(s)	6, 36, 86, 274, 321
DdeI	CTNAG	2 cut(s)	270, 322
Eam1104I	CTCTTC	2 cut(s)	201, 206
EarI	CTCTTC	2 cut(s)	201, 206
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	3 cut(s)	33, 46, 73
FaiI	YATR	8 cut(s)	31, 44, 71, 189, 233, 235, 256, 339
FatI	CATG	3 cut(s)	29, 42, 69
Fnu4HI	GCNGC	5 cut(s)	37, 40, 61, 275, 319
Fsp4HI	GCNGC	5 cut(s)	37, 40, 61, 275, 319
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	5 cut(s)	37, 40, 61, 275, 319
HapII	CCGG	2 cut(s)	111, 174
HgaI	GACGC	2 cut(s)	103, 180
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	33, 46, 73
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	111, 174
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	83, 271
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	163, 388
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	42, 63
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 92, 158
HpyF3I	CTNAG	2 cut(s)	270, 322
HpySE526I	ACGT	1 cut(s)	341
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	33, 46, 73
HspAI	GCGC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	11, 79, 124, 187, 227, 344
Lsp1109I	GCAGC	2 cut(s)	26, 47
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	103
MbiI	CCGCTC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	91, 188, 193
MluCI	AATT	4 cut(s)	223, 346, 370, 399
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	23, 118, 131, 191
MseI	TTAA	2 cut(s)	308, 345
MslI	CAYNNNNRTG	2 cut(s)	28, 68
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	2 cut(s)	111, 174
MwoI	GCNNNNNNNGC	3 cut(s)	66, 92, 158
NlaIII	CATG	3 cut(s)	33, 46, 73
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	160
NspI	RCATGY	2 cut(s)	46, 73
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PkrI	GCNGC	5 cut(s)	38, 41, 62, 276, 320
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	35
RseI	CAYNNNNRTG	2 cut(s)	28, 68
SaqAI	TTAA	2 cut(s)	308, 345
SatI	GCNGC	5 cut(s)	37, 40, 61, 275, 319
SchI	GAGTC	1 cut(s)	164
SetI	ASST	5 cut(s)	110, 123, 131, 183, 344
SfuI	TTCGAA	1 cut(s)	204
SmiMI	CAYNNNNRTG	2 cut(s)	28, 68
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	4 cut(s)	223, 346, 370, 399
SsiI	CCGC	3 cut(s)	37, 275, 318
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	15, 204
TasI	AATT	4 cut(s)	223, 346, 370, 399
TauI	GCSGC	3 cut(s)	39, 277, 321
Tru1I	TTAA	2 cut(s)	308, 345
Tru9I	TTAA	2 cut(s)	308, 345
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	39, 60
Tsp45I	GTSAC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	2 cut(s)	46, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.