Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010206

Physical Location & Seq

Genomic Coordinates Forward (+)

37020703 .. 37024244

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGCAAATAGACGCGCATATGAAGCGAGTGGCCTACACCAGAATCCAAGCATGGAAGCGGTGCATGTCTCTAGCCCAATGCTGCACCACCATGCGCTCTCTCAAACCCACCCACGCCGTCTTCATCACCCACGGCCTCCACCTCAACAACTTCGCCGTCAGCAAACTCCTCGCCTTTTGCGCCCTCTCCGACTCCGGCAGCCTCCGCTACGCCTCCCTCATATTCCACCAAGTCCCCGCCCCCAACGCCTACATGTACAACACTCTCATCAGAGCCCACTCCGCCAGCTCGGATCCTCATCTCGCTATGTATTATTTCCAGCTCATGTCAAAACAAATCGACTTGGAACCCGATAATTTCACGTTTCATTTCGCCATCTTGGGATGTGTAAACTGCGGTTGGATTGGTCCGGGGAGGCAGATGCATTGTCTGGTGGTTAAGAACGGGTTGGTTGCGGCGGATGCGCATGTTCAGACTGCGGTTGTGAGGCTGTATGTGGAGTGCGGGGTTTTAGGGGACGCACACAAGGTGTTTGATGAAATTCCTGAGAGAGATATGGTACAGTGGAATGTGATTATGAATGGGTATGTCAAGCGTGGCTTGGCTTCCGAGGCTTTGAGGGTGTTCCAGGATATGTTGGTGCGTGGGTTCGAGCCGGATGGGTTTTGTGTCGCCACGGGGCTTGCGGCGTGTGCGCATTTGGGGGCTCTTTGGCAGGGGAAGTGGATTCATGAGTATGTTAGAAAGAGGGAGGGGTTGAATTCGGATGTGTTTATTGGGACGGCACTTGTGGATATGTATGCAAAGTGTGGTTGTATTGATTTGGCTGTGGAAGCGTTTGAGGGGATGGGGAAAAGGAATGTGGTGTCGTGGTCGGCCATGATTGGAGCCTATGGGGTGCATGGTTATGCGACAGAAGCAATTTCTTGCTTGGAGAGAATGCAGGTAGATGATGGAGTCAAGCCTGATGGTGTTGTCCTTCTAGGAGTACTAACAGCCTGTAATCATGGAGGATTGCTTGAGAAGGGTAAGGCTCTGTTGGACAACATGAAAGCAAAATATGGGATTGTGCCCAAGCACGAGCATTATAGTTGTGTTATAGACTTGCTGTGTAAGGCGGGTCGATTAAGTGATGCGTTTGAGCTTATTAGAAGAATGCCCATGAAGCCGCTTGCTTCTGTGTGGGGTGCTTTATTGAGTGGGTGTCGTATCCATAATAATGTAGATCTTGCAGAGATTGCTGTCGAGCAACTTCTACAGGTAGCAAATGATGACAGGGGAGAAGAAGTCGGTGCTTATGTTCAGTTATCAAACATTTATTTAGGTGCCCAGAGAAGTGAAGATGCACTTAGGATAAGGAAGATGATTGGTGAAAAGGGAATCAAGAAGACACCAGGTTGCAGCATGCTAGAGGTGGATGGGAAGGTTAATGAGTTTGTATCAGGAGATGTGTCCCATTCCCATTGTGTTCAGATATGTACAATGTTGGATCTAATATCTGCTGACTCGTTTCAGGACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

508

Amino Acids

55.88

Weight (kDa)

6.69

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 225	1.4e-08	PPR repeat family
PPR	PF01535	189 - 217	2.9e-06	PPR repeat
PPR_1	PF12854	355 - 386	2.1e-07	PPR repeat
E_motif	PF20431	405 - 471	2.7e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28640 AT3G28660
fragaria_vesca	FvH4_6g49400
malus_domestica	MD17G1046400.v1.1
prunus_persica	Prupe.3G272900_v2.0.a1 Prupe.3G272900_v2.0.a1
pyrus_communis	pycom111g03510 pycom111g03520
rosa_chinensis	RchiOBHm_Chr1g0349531 RchiOBHm_Chr2g0169281
rosa_laevigata	RLG00000021851
rosa_multiflora	Rmu_ssc0000399.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082290 Rroxscaffold_4G00305480
rosa_rugosa	Rorug02G0539200
rosa_samantha	Rh2AG610300 Rh2BG623400 Rh2CG591900 Rh2DG634200
rosa_wichuraiana	Rw1G018890 Rw2G050610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	465, 696
Acc36I	ACCTGC	1 cut(s)	934
AccB1I	GGYRCC	1 cut(s)	1325
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	3 cut(s)	287, 300, 1497
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	2 cut(s)	540, 760
AdeI	CACNNNGTG	1 cut(s)	529
AfaI	GTAC	4 cut(s)	257, 561, 990, 1480
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	627, 1393
AluBI	AGCT	3 cut(s)	288, 322, 1144
AluI	AGCT	3 cut(s)	288, 322, 1144
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	3 cut(s)	287, 300, 1497
AoxI	GGCC	3 cut(s)	30, 133, 876
ApeKI	GCWGC	3 cut(s)	81, 198, 1401
ApoI	RAATTY	2 cut(s)	540, 760
AspLEI	GCGC	5 cut(s)	16, 96, 182, 466, 697
AspS9I	GGNCC	2 cut(s)	407, 1516
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	118, 1382
AvaII	GGWCC	2 cut(s)	407, 1516
BaeGI	GKGCMC	2 cut(s)	1074, 1330
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	1325
BanII	GRGCYC	2 cut(s)	277, 709
BauI	CACGAG	1 cut(s)	1079
BbsI	GAAGAC	2 cut(s)	112, 1394
BbvI	GCAGC	3 cut(s)	68, 210, 1413
BccI	CCATC	6 cut(s)	383, 653, 841, 947, 962, 1412
BceAI	ACGGC	4 cut(s)	101, 140, 148, 798
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	2 cut(s)	629, 1395
BciVI	GTATCC	1 cut(s)	1220
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	3 cut(s)	71, 983, 1409
BfmI	CTRYAG	1 cut(s)	1256
BfuAI	ACCTGC	1 cut(s)	934
BfuI	GTATCC	1 cut(s)	1220
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	6 cut(s)	82, 199, 456, 687, 1169, 1402
BlsI	GCNGC	6 cut(s)	83, 200, 457, 688, 1170, 1403
BmcAI	AGTACT	1 cut(s)	990
Bme1390I	CCNGG	3 cut(s)	411, 629, 1395
Bme18I	GGWCC	2 cut(s)	407, 1516
BmgT120I	GGNCC	2 cut(s)	407, 1516
BmiI	GGNNCC	5 cut(s)	294, 348, 889, 1327, 1518
BmrFI	CCNGG	3 cut(s)	411, 629, 1395
BmsI	GCATC	4 cut(s)	411, 451, 1123, 1333
BpiI	GAAGAC	2 cut(s)	112, 1394
BpuEI	CTTGAG	1 cut(s)	1040
BpuMI	CCSGG	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	130, 410, 609, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	1272, 1302
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	629, 1395
BseDI	CCNNGG	4 cut(s)	130, 410, 609, 675
BseGI	GGATG	6 cut(s)	389, 466, 664, 772, 852, 1423
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	2 cut(s)	1074, 1330
BseXI	GCAGC	3 cut(s)	68, 210, 1413
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	32, 135, 878
BshNI	GGYRCC	1 cut(s)	1325
BsiSI	CCGG	3 cut(s)	195, 410, 656
BslFI	GGGAC	4 cut(s)	218, 530, 793, 1438
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	4 cut(s)	218, 530, 793, 1438
BsmI	GAATGC	2 cut(s)	945, 1161
BsnI	GGCC	3 cut(s)	32, 135, 878
Bsp1286I	GDGCHC	4 cut(s)	277, 709, 1074, 1330
Bsp1407I	TGTACA	2 cut(s)	255, 1478
Bsp143I	GATC	3 cut(s)	292, 1225, 1489
BspANI	GGCC	3 cut(s)	32, 135, 878
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	5 cut(s)	294, 348, 889, 1327, 1518
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	3 cut(s)	287, 300, 1497
BspT107I	GGYRCC	1 cut(s)	1325
BsrGI	TGTACA	2 cut(s)	255, 1478
BssECI	CCNNGG	4 cut(s)	130, 410, 609, 675
BssMI	GATC	3 cut(s)	292, 1225, 1489
BssSI	CACGAG	1 cut(s)	1079
Bst2BI	CACGAG	1 cut(s)	1079
Bst2UI	CCWGG	2 cut(s)	629, 1395
Bst4CI	ACNGT	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	1238
BstAUI	TGTACA	2 cut(s)	255, 1478
BstC8I	GCNNGC	4 cut(s)	286, 684, 1173, 1406
BstDEI	CTNAG	2 cut(s)	546, 1349
BstDSI	CCRYGG	2 cut(s)	130, 675
BstF5I	GGATG	6 cut(s)	389, 466, 664, 772, 852, 1423
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	5 cut(s)	16, 96, 182, 466, 697
BstKTI	GATC	3 cut(s)	295, 1228, 1492
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	292, 1225, 1489
BstNI	CCWGG	2 cut(s)	629, 1395
BstNSI	RCATGY	4 cut(s)	67, 256, 470, 1408
BstSCI	CCNGG	3 cut(s)	409, 627, 1393
BstSFI	CTRYAG	1 cut(s)	1256
BstSLI	GKGCMC	2 cut(s)	1074, 1330
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	68, 210, 1413
BstV2I	GAAGAC	2 cut(s)	112, 1394
BstX2I	RGATCY	3 cut(s)	292, 1225, 1489
BstYI	RGATCY	3 cut(s)	292, 1225, 1489
BsuI	GTATCC	1 cut(s)	1220
BsuRI	GGCC	3 cut(s)	32, 135, 878
BtgI	CCRYGG	2 cut(s)	130, 675
BtsCI	GGATG	6 cut(s)	389, 466, 664, 772, 852, 1423
BtsIMutI	CAGTG	1 cut(s)	569
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	4 cut(s)	286, 684, 1173, 1406
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	5 cut(s)	16, 96, 182, 466, 697
Cfr13I	GGNCC	2 cut(s)	407, 1516
CseI	GACGC	2 cut(s)	20, 527
CsiI	ACCWGGT	1 cut(s)	1393
Csp6I	GTAC	4 cut(s)	256, 560, 989, 1479
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviQI	GTAC	4 cut(s)	256, 560, 989, 1479
DdeI	CTNAG	2 cut(s)	546, 1349
DpnI	GATC	3 cut(s)	294, 1227, 1491
DpnII	GATC	3 cut(s)	292, 1225, 1489
DraIII	CACNNNGTG	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	876
EciI	GGCGGA	2 cut(s)	271, 473
Eco24I	GRGCYC	2 cut(s)	277, 709
Eco47I	GGWCC	2 cut(s)	407, 1516
EcoO109I	RGGNCCY	1 cut(s)	1516
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	2 cut(s)	627, 1393
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	277, 709
FalI	AAGNNNNNCTT	4 cut(s)	584, 616, 1332, 1364
FaqI	GGGAC	4 cut(s)	218, 530, 793, 1438
FauI	CCCGC	3 cut(s)	244, 497, 1111
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	82, 199, 456, 687, 1169, 1402
FokI	GGATG	6 cut(s)	396, 473, 671, 779, 859, 1430
FriOI	GRGCYC	2 cut(s)	277, 709
Fsp4HI	GCNGC	6 cut(s)	82, 199, 456, 687, 1169, 1402
FspAI	RTGCGCAY	2 cut(s)	465, 696
FspBI	CTAG	3 cut(s)	71, 983, 1409
FspI	TGCGCA	2 cut(s)	465, 696
GlaI	GCGC	5 cut(s)	15, 95, 181, 465, 696
GluI	GCNGC	6 cut(s)	82, 199, 456, 687, 1169, 1402
HaeIII	GGCC	3 cut(s)	32, 135, 878
HapII	CCGG	3 cut(s)	195, 410, 656
HgaI	GACGC	2 cut(s)	20, 527
HhaI	GCGC	5 cut(s)	16, 96, 182, 466, 697
Hin6I	GCGC	5 cut(s)	14, 94, 180, 464, 695
HinP1I	GCGC	5 cut(s)	14, 94, 180, 464, 695
HinfI	GANTC	6 cut(s)	42, 191, 727, 957, 1380, 1505
HpaII	CCGG	3 cut(s)	195, 410, 656
HphI	GGTGA	2 cut(s)	118, 1382
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	7 cut(s)	190, 272, 292, 474, 610, 766, 1473
Hpy188III	TCNNGA	5 cut(s)	545, 731, 1384, 1443, 1514
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	3 cut(s)	989, 1018, 1417
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	546, 1349
HpySE526I	ACGT	1 cut(s)	362
HspAI	GCGC	5 cut(s)	14, 94, 180, 464, 695
Kzo9I	GATC	3 cut(s)	292, 1225, 1489
LmnI	GCTCC	1 cut(s)	887
Lsp1109I	GCAGC	3 cut(s)	68, 210, 1413
LweI	GCATC	4 cut(s)	411, 451, 1123, 1333
MabI	ACCWGGT	1 cut(s)	1393
MaeI	CTAG	3 cut(s)	71, 983, 1409
MaeII	ACGT	1 cut(s)	362
MalI	GATC	3 cut(s)	294, 1227, 1491
MboI	GATC	3 cut(s)	292, 1225, 1489
MboII	GAAGA	6 cut(s)	112, 1164, 1295, 1352, 1372, 1399
MflI	RGATCY	3 cut(s)	292, 1225, 1489
MhlI	GDGCHC	4 cut(s)	277, 709, 1074, 1330
MluCI	AATT	4 cut(s)	355, 540, 760, 921
MlyI	GAGTC	3 cut(s)	185, 966, 1499
MmeI	TCCRAC	4 cut(s)	213, 380, 1020, 1467
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	3 cut(s)	438, 1127, 1428
MslI	CAYNNNNRTG	4 cut(s)	89, 735, 906, 1218
MspI	CCGG	3 cut(s)	195, 410, 656
MspR9I	CCNGG	3 cut(s)	411, 629, 1395
Mva1269I	GAATGC	2 cut(s)	945, 1161
MvaI	CCWGG	2 cut(s)	629, 1395
MvnI	CGCG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	411
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	3 cut(s)	292, 1225, 1489
NlaIV	GGNNCC	5 cut(s)	294, 348, 889, 1327, 1518
NsbI	TGCGCA	2 cut(s)	465, 696
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	4 cut(s)	67, 256, 470, 1408
PaeI	GCATGC	1 cut(s)	1408
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	252
PctI	GAATGC	2 cut(s)	945, 1161
PfeI	GAWTC	3 cut(s)	42, 727, 1380
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	6 cut(s)	83, 200, 457, 688, 1170, 1403
PleI	GAGTC	3 cut(s)	185, 965, 1499
PpsI	GAGTC	3 cut(s)	185, 965, 1499
PpuMI	RGGWCCY	1 cut(s)	1516
PscI	ACATGT	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	1516
Psp6I	CCWGG	2 cut(s)	627, 1393
PspGI	CCWGG	2 cut(s)	627, 1393
PspN4I	GGNNCC	5 cut(s)	294, 348, 889, 1327, 1518
PspPI	GGNCC	2 cut(s)	407, 1516
PspPPI	RGGWCCY	1 cut(s)	1516
PsuI	RGATCY	3 cut(s)	292, 1225, 1489
RsaI	GTAC	4 cut(s)	257, 561, 990, 1480
RsaNI	GTAC	4 cut(s)	256, 560, 989, 1479
RseI	CAYNNNNRTG	4 cut(s)	89, 735, 906, 1218
SaqAI	TTAA	3 cut(s)	438, 1127, 1428
SatI	GCNGC	6 cut(s)	82, 199, 456, 687, 1169, 1402
Sau3AI	GATC	3 cut(s)	292, 1225, 1489
Sau96I	GGNCC	2 cut(s)	407, 1516
ScaI	AGTACT	1 cut(s)	990
SchI	GAGTC	3 cut(s)	185, 966, 1499
ScrFI	CCNGG	3 cut(s)	411, 629, 1395
SduI	GDGCHC	4 cut(s)	277, 709, 1074, 1330
SexAI	ACCWGGT	1 cut(s)	1393
SfaNI	GCATC	4 cut(s)	411, 451, 1123, 1333
SfcI	CTRYAG	1 cut(s)	1256
SinI	GGWCC	2 cut(s)	407, 1516
SmiMI	CAYNNNNRTG	4 cut(s)	89, 735, 906, 1218
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	1408
Sse9I	AATT	4 cut(s)	355, 540, 760, 921
SspMI	CTAG	3 cut(s)	71, 983, 1409
StyD4I	CCNGG	3 cut(s)	409, 627, 1393
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	4 cut(s)	339, 651, 1123, 1245
TasI	AATT	4 cut(s)	355, 540, 760, 921
TatI	WGTACW	3 cut(s)	255, 988, 1478
TauI	GCSGC	3 cut(s)	458, 689, 1171
TfiI	GAWTC	3 cut(s)	42, 727, 1380
Tru1I	TTAA	3 cut(s)	438, 1127, 1428
Tru9I	TTAA	3 cut(s)	438, 1127, 1428
TscAI	CASTG	1 cut(s)	569
TseI	GCWGC	3 cut(s)	81, 198, 1401
TspDTI	ATGAA	8 cut(s)	35, 112, 356, 552, 593, 719, 1064, 1178
TspRI	CASTG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	407, 1516
XapI	RAATTY	2 cut(s)	540, 760
XceI	RCATGY	4 cut(s)	67, 256, 470, 1408
XspI	CTAG	3 cut(s)	71, 983, 1409
ZrmI	AGTACT	1 cut(s)	990
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.