AT3G28670

Olfactory receptor 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003215
Physical Location & Seq
Forward (+)
10743769 .. 10747202
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28670.3

Sequence Viewer

Length: 1476 bp
ATGGTGAAAGCAGTGGTTGGAGAAGATACTAGACTTACTTCTGTTGAAGATCGTCTCTCTCACTCAGCTATTCCTGCTGAAGTGGGTCTTGTGATAGGGAAGCTTAGCTCTGTTCTGGATCGTGGATTTGTCTTTGATTTGATTCCTACACCAAGTAACGATGATGGTGAACCAGCATGCGCGGTTTTGGAGACCAAAGATGATAAAAGGAAGCCTTCTAAGTCTAAATCTCAGTCATCTGAGTCGTCTTCTTTATCGATTGATTCAGATTGGGTTGCAGAACATGCTCGACAGGTATCGAGAATGCTGTTGGGTGGCATGAAGGTTGTTGGTATCTATGTATGGGCTAGTGACATTGCTTTTAAGAATTCTACTATGATCCTTTGCCAGGCTATGAAGGCAGTTTCGGATGCAATACGACATTTGGATCCTAGCTTGAATGAAGCTCTTCTTATTCACATATGTTACAGTCCGAGGAGATGGAATTGCCGAACTTGTTTGCTGAGTTCAAGTATTACATCAAGTAATCTTCGACCTTGTGACTTTAAGCTGGGAAAGGTGTTAAGTTCTCTACAGAGGTTTAGGTGCAGCTACAACTTTAGTTTCAGATTACCAATTTACGGTGAGGGTGGGTCAAGTGCACAAACGTTTACTGATACCATCCGTAAAGAACTTGCAATTCATGCAAAGGAGCTAAATAGTGCAAATGCAATGATTGATGGAGACTTGGTGCATAACGACGAGCCTTGTAACACGGATGGTGAACATGAAATTGAATTGTTATTCCCATTCATGAAAGATACTCGTGCTGAGGCATCAACTGCAAAGAACGTTACTGGAATTCTACTCTTCACTGGTTCTGTATTCTCTTACGCCTACTTGAACGTGAAAGAACCAGTTTCACAAGCTATTGCTGATATTAAGGCTGACATTATTAGAAGTCTGCAAAGTAGATTGGACATTATCTGTGATGAGTCCGAGCAGGATCTCAATCCAACTGATGTGGGAGACAATGAAAATGCAGACGGGATGTCGAAAATTCCCATCTCCAAACTTATCCTCAATTCATCTATAAAAGCGTGCCATCTCCGTCTTCCCAGGAGAGTTCTTGTTCCGTGGCTGTCCGGTATGTTCATCTGCGATTATCTACAGCCGTTCGAATCACTCGAGGTGGTAAAAGAACGGTGTATCGAGTTGATGTCCATGGAACATTCTTCTATAGACGAATCAAAGATTTCAGAAGTGGAAACCGAAACGTCTTTATTGATCGCGGAATCAATGTGGGACGTGATATCTCCTGCGACATCTGCTTCCAGCTTCTGCCTAGGAGGGAATGTGGAAAGGACAACGGATGGTGAAGACGAAACCAAGAGAACGAGTAACGCAAGTACTGCATCAAATGTCCCGATTTTGGTCGGGATTTTCGTACTTTTACTCTCAATTGTATTAGGATTCATGCTTTACCAGAGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

491

Amino Acids

54.0

Weight (kDa)

5.0

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 29 - 406 6.8e-103 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 182, 1271
AciI CCGC 2 cut(s) 182, 1271
AclI AACGTT 2 cut(s) 647, 831
AclWI GGATC 5 cut(s) 126, 373, 422, 435, 993
AcsI RAATTY 3 cut(s) 367, 840, 1038
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 1390, 1428
AfiI CCNNNNNNNGG 3 cut(s) 388, 620, 1411
AgsI TTSAA 5 cut(s) 47, 439, 510, 776, 883
AhdI GACNNNNNGTC 1 cut(s) 1030
AjiI CACGTC 1 cut(s) 1288
AjnI CCWGG 2 cut(s) 387, 1097
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 4 cut(s) 59, 185, 717, 1002
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 5 cut(s) 126, 373, 422, 435, 993
AlwNI CAGNNNCTG 1 cut(s) 1320
Ama87I CYCGRG 1 cut(s) 1166
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 588
ApoI RAATTY 3 cut(s) 367, 840, 1038
Asp700I GAANNNNTTC 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 1324
AspLEI GCGC 1 cut(s) 182
AsuHPI GGTGA 5 cut(s) 16, 179, 635, 773, 1367
AsuII TTCGAA 1 cut(s) 1158
AvaI CYCGRG 1 cut(s) 1166
AvrII CCTAGG 1 cut(s) 1324
BaeGI GKGCMC 1 cut(s) 643
BamHI GGATCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 3 cut(s) 240, 1085, 1365
Bbv12I GWGCWC 1 cut(s) 643
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 1 cut(s) 600
BccI CCATC 8 cut(s) 158, 474, 668, 713, 752, 1052, 1092, 1346
BceAI ACGGC 1 cut(s) 1138
BciT130I CCWGG 2 cut(s) 389, 1099
BcoDI GTCTC 4 cut(s) 59, 185, 717, 1002
BfaI CTAG 4 cut(s) 30, 348, 432, 1325
BfmI CTRYAG 3 cut(s) 572, 1148, 1218
BisI GCNGC 1 cut(s) 589
BlnI CCTAGG 1 cut(s) 1324
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 590
BmcAI AGTACT 1 cut(s) 1390
Bme1390I CCNGG 2 cut(s) 389, 1099
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 1166
BmgBI CACGTC 1 cut(s) 1288
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 389, 1099
BmsI GCATC 3 cut(s) 400, 824, 1403
BpiI GAAGAC 3 cut(s) 240, 1085, 1365
Bpu10I CCTNAGC 1 cut(s) 810
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 1158
Bsa29I ATCGAT 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 5 cut(s) 473, 1097, 1115, 1203, 1324
BsaWI WCCGGW 1 cut(s) 1124
BsaXI ACNNNNNCTCC 4 cut(s) 714, 744, 1320, 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 620, 1411
Bse1I ACTGG 3 cut(s) 841, 859, 896
Bse3DI GCAATG 2 cut(s) 354, 717
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 389, 1099
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 5 cut(s) 473, 1097, 1115, 1203, 1324
BseGI GGATG 5 cut(s) 415, 660, 763, 1035, 1357
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 388, 620, 1411
BseMI GCAATG 2 cut(s) 354, 717
BseMII CTCAG 5 cut(s) 78, 231, 245, 494, 801
BseNI ACTGG 3 cut(s) 841, 859, 896
BseRI GAGGAG 1 cut(s) 490
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 1 cut(s) 600
BseYI CCCAGC 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 607
Bsh1236I CGCG 2 cut(s) 182, 1271
BshVI ATCGAT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 1 cut(s) 1125
BslFI GGGAC 2 cut(s) 1298, 1388
BslI CCNNNNNNNGG 3 cut(s) 388, 620, 1411
BsmAI GTCTC 4 cut(s) 59, 185, 717, 1002
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 2 cut(s) 1298, 1388
BsmI GAATGC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 1166
Bsp119I TTCGAA 1 cut(s) 1158
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
Bsp1720I GCTNAGC 1 cut(s) 104
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 2 cut(s) 182, 1271
BspCNI CTCAG 5 cut(s) 77, 232, 244, 495, 802
BspDI ATCGAT 1 cut(s) 257
BspFNI CGCG 2 cut(s) 182, 1271
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 5 cut(s) 126, 373, 422, 435, 993
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 1158
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 354, 717
BsrI ACTGG 3 cut(s) 841, 859, 896
BssECI CCNNGG 5 cut(s) 473, 1097, 1115, 1203, 1324
BssMI GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 1203, 1324
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 389, 1099
Bst4CI ACNGT 3 cut(s) 470, 623, 1185
Bst6I CTCTTC 2 cut(s) 453, 854
BstAPI GCANNNNNTGC 4 cut(s) 284, 683, 821, 1391
BstBI TTCGAA 1 cut(s) 1158
BstC8I GCNNGC 2 cut(s) 178, 1081
BstDEI CTNAG 7 cut(s) 64, 104, 219, 231, 240, 503, 810
BstDSI CCRYGG 2 cut(s) 1115, 1203
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 5 cut(s) 415, 660, 763, 1035, 1357
BstFNI CGCG 2 cut(s) 182, 1271
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 52, 121, 381, 430, 988, 1269
BstMAI GTCTC 4 cut(s) 59, 185, 717, 1002
BstMBI GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
BstMWI GCNNNNNNNGC 7 cut(s) 74, 284, 398, 683, 821, 1307, 1391
BstNI CCWGG 2 cut(s) 389, 1099
BstNSI RCATGY 2 cut(s) 180, 287
BstSCI CCNGG 2 cut(s) 387, 1097
BstSFI CTRYAG 3 cut(s) 572, 1148, 1218
BstSLI GKGCMC 1 cut(s) 643
BstUI CGCG 2 cut(s) 182, 1271
BstV1I GCAGC 1 cut(s) 600
BstV2I GAAGAC 3 cut(s) 240, 1085, 1365
BstX2I RGATCY 2 cut(s) 427, 985
BstYI RGATCY 2 cut(s) 427, 985
Bsu15I ATCGAT 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 1115, 1203
BtrI CACGTC 1 cut(s) 1288
BtsCI GGATG 5 cut(s) 415, 660, 763, 1035, 1357
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 852
Cac8I GCNNGC 2 cut(s) 178, 1081
CaiI CAGNNNCTG 1 cut(s) 1320
CciI TCATGA 1 cut(s) 792
CfoI GCGC 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 257
Csp6I GTAC 2 cut(s) 1389, 1427
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviAII CATG 8 cut(s) 177, 284, 319, 683, 767, 793, 1204, 1456
CviQI GTAC 2 cut(s) 1389, 1427
DdeI CTNAG 7 cut(s) 64, 104, 219, 231, 240, 503, 810
DpnI GATC 6 cut(s) 51, 120, 380, 429, 987, 1268
DpnII GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
DriI GACNNNNNGTC 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 453, 854
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 2 cut(s) 453, 854
Eco130I CCWWGG 2 cut(s) 1203, 1324
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 1293
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 1166
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRI GAATTC 2 cut(s) 367, 840
EcoRII CCWGG 2 cut(s) 387, 1097
EcoRV GATATC 1 cut(s) 1293
EcoT14I CCWWGG 2 cut(s) 1203, 1324
ErhI CCWWGG 2 cut(s) 1203, 1324
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 8 cut(s) 180, 287, 322, 686, 770, 796, 1207, 1459
FalI AAGNNNNNCTT 6 cut(s) 72, 104, 199, 231, 435, 467
FaqI GGGAC 2 cut(s) 1298, 1388
FatI CATG 8 cut(s) 176, 283, 318, 682, 766, 792, 1203, 1455
FauNDI CATATG 1 cut(s) 461
Fnu4HI GCNGC 1 cut(s) 589
FokI GGATG 5 cut(s) 422, 647, 770, 1042, 1364
Fsp4HI GCNGC 1 cut(s) 589
FspBI CTAG 4 cut(s) 30, 348, 432, 1325
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 589
GsaI CCCAGC 1 cut(s) 554
HapII CCGG 1 cut(s) 1125
HhaI GCGC 1 cut(s) 182
Hin1II CATG 8 cut(s) 180, 287, 322, 686, 770, 796, 1207, 1459
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 8 cut(s) 142, 242, 263, 974, 1160, 1226, 1274, 1452
HpaII CCGG 1 cut(s) 1125
HphI GGTGA 5 cut(s) 16, 179, 635, 773, 1367
Hpy166II GTNNAC 4 cut(s) 170, 641, 651, 764
Hpy188I TCNGA 7 cut(s) 241, 268, 409, 474, 608, 979, 1240
Hpy188III TCNNGA 5 cut(s) 116, 300, 793, 1405, 1417
Hpy8I GTNNAC 4 cut(s) 170, 641, 651, 764
Hpy99I CGWCG 1 cut(s) 743
HpyAV CCTTC 3 cut(s) 225, 316, 391
HpyCH4III ACNGT 3 cut(s) 470, 623, 1185
HpyCH4IV ACGT 5 cut(s) 647, 831, 885, 1256, 1287
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 284, 398, 683, 821, 1307, 1391
HpyF3I CTNAG 7 cut(s) 64, 104, 219, 231, 240, 503, 810
HpySE526I ACGT 5 cut(s) 647, 831, 885, 1256, 1287
Hsp92II CATG 8 cut(s) 180, 287, 322, 686, 770, 796, 1207, 1459
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 3 cut(s) 400, 824, 1403
MaeI CTAG 4 cut(s) 30, 348, 432, 1325
MaeII ACGT 5 cut(s) 647, 831, 885, 1256, 1287
MaeIII GTNAC 7 cut(s) 155, 350, 464, 539, 749, 832, 1379
MalI GATC 6 cut(s) 51, 120, 380, 429, 987, 1268
MboI GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
MboII GAAGA 9 cut(s) 35, 59, 240, 440, 521, 841, 1085, 1206, 1370
MfeI CAATTG 1 cut(s) 1440
MflI RGATCY 2 cut(s) 427, 985
MhlI GDGCHC 1 cut(s) 643
MlyI GAGTC 2 cut(s) 251, 983
MmeI TCCRAC 1 cut(s) 1019
MnlI CCTC 7 cut(s) 468, 570, 619, 805, 1070, 1162, 1322
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 4 cut(s) 363, 546, 563, 921
MspI CCGG 1 cut(s) 1125
MspR9I CCNGG 2 cut(s) 389, 1099
MunI CAATTG 1 cut(s) 1440
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 2 cut(s) 389, 1099
MvnI CGCG 2 cut(s) 182, 1271
MwoI GCNNNNNNNGC 7 cut(s) 74, 284, 398, 683, 821, 1307, 1391
NcoI CCATGG 1 cut(s) 1203
NdeI CATATG 1 cut(s) 461
NdeII GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
NlaIII CATG 8 cut(s) 180, 287, 322, 686, 770, 796, 1207, 1459
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 350, 539
NspI RCATGY 2 cut(s) 180, 287
NspV TTCGAA 1 cut(s) 1158
PaeI GCATGC 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 2 cut(s) 1164, 1422
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 6 cut(s) 142, 263, 1160, 1226, 1274, 1452
PkrI GCNGC 1 cut(s) 590
PleI GAGTC 2 cut(s) 250, 982
PpsI GAGTC 2 cut(s) 250, 982
Psp1406I AACGTT 2 cut(s) 647, 831
Psp6I CCWGG 2 cut(s) 387, 1097
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 2 cut(s) 387, 1097
PspN4I GGNNCC 1 cut(s) 429
PspXI VCTCGAGB 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 1320
PsuI RGATCY 2 cut(s) 427, 985
RsaI GTAC 2 cut(s) 1390, 1428
RsaNI GTAC 2 cut(s) 1389, 1427
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 363, 546, 563, 921
SatI GCNGC 1 cut(s) 589
Sau3AI GATC 6 cut(s) 49, 118, 378, 427, 985, 1266
ScaI AGTACT 1 cut(s) 1390
SchI GAGTC 2 cut(s) 251, 983
ScrFI CCNGG 2 cut(s) 389, 1099
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 3 cut(s) 400, 824, 1403
SfcI CTRYAG 3 cut(s) 572, 1148, 1218
Sfr274I CTCGAG 1 cut(s) 1166
SfuI TTCGAA 1 cut(s) 1158
SlaI CTCGAG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SphI GCATGC 1 cut(s) 180
SsiI CCGC 2 cut(s) 182, 1271
SspMI CTAG 4 cut(s) 30, 348, 432, 1325
StyD4I CCNGG 2 cut(s) 387, 1097
StyI CCWWGG 2 cut(s) 1203, 1324
TaaI ACNGT 3 cut(s) 470, 623, 1185
TaiI ACGT 5 cut(s) 650, 834, 888, 1259, 1290
TaqI TCGA 8 cut(s) 257, 289, 299, 532, 1034, 1158, 1167, 1191
TatI WGTACW 1 cut(s) 1388
TfiI GAWTC 6 cut(s) 142, 263, 1160, 1226, 1274, 1452
Tru1I TTAA 4 cut(s) 363, 546, 563, 921
Tru9I TTAA 4 cut(s) 363, 546, 563, 921
TscAI CASTG 2 cut(s) 18, 859
TseFI GTSAC 2 cut(s) 350, 539
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 2 cut(s) 350, 539
TspGWI ACGGA 5 cut(s) 653, 770, 1079, 1104, 1364
TspRI CASTG 2 cut(s) 18, 859
VneI GTGCAC 1 cut(s) 639
XagI CCTNNNNNAGG 1 cut(s) 386
XapI RAATTY 3 cut(s) 367, 840, 1038
XceI RCATGY 2 cut(s) 180, 287
XhoI CTCGAG 1 cut(s) 1166
XmaJI CCTAGG 1 cut(s) 1324
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 4 cut(s) 30, 348, 432, 1325
ZrmI AGTACT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.