Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004304.1

Orthogroup ID

OG0003215

Physical Location & Seq

Genomic Coordinates Forward (+)

13906 .. 22281

Gene Structure 8376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004304.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggacttcgataaccttctcgatttcaagaacgacgacccactcctcaaccctctgctaagaaaaggtgggtcttctcttctcttcgaattggtgaggtcttggttgccaagtgggaaggttaagcctgtgcggttgaatgatgtgaactgggggattagttggaaagatcggcgaattccattattcgtcataggcaagctcagctctaccctcgaccgaggcttcgtctttgatttggtcccgactccgcctaacgacgccggagctccgccttgttccctcgtcgagcccgataagagaaagggccccaagcccaaatctcagtcctctgattcccactctctctcaattgacaatgattgggtcgccgaacatgctcgtcaggtgtcaagaatgttggtgggcggcatgaaggtggttgggatttacatttggattagcgataatgcattcaagaattcaaacattgtgctttgccagactgtaatgggagttgccaaagctgcgccgctctctgagagtgattgggatgagagacttcttattcacatttgctatagtccaaggagatggacatgtcgaaattgtatggtgacttcaaatattacatcaagcagcctaagaccttgtgacttcaaaatgggaagggtcctagcttcccttcaaagatttaggtgcatgtacaacttcgatattaggttacctatatctcacaagaattcatcaaatgttcagactatgagtgaagctcttcgtcatgaaatttcaattcatgctaaatatttaaaaagtgcaaaagccacgctggatggaaatttggttgtacacaatgatctatgcacatcagatggtttgcatgaagtagaattgctgttaccatttgtggaagatactgaagtatgcagccaaaaagatgctcttggtgttcttgcttttagtggttctgtttgttcctttgcatacttaaatattcgagaaccaatttcacaagctgttactgatataaagggtagttttgagagagtgacttggccttatggttctggccttctgggagatggagaaaatctgaaaaaggaagaagaggactggttgcagaagaggagttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ODR4-like

Protein Analysis

371

Amino Acids

41.55

Weight (kDa)

7.55

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28670 AT3G28670 AT3G28670
fragaria_vesca	FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860 FvH4_5g33860
malus_domestica	MD08G1208600.v1.1 MD15G1392600.v1.1
prunus_persica	Prupe.1G540100_v2.0.a1 Prupe.1G540100_v2.0.a1
pyrus_communis	pycom08g18000 pycom15g35320
rosa_chinensis	RchiOBHm_Chr7g0233191
rosa_laevigata	RLG00000001288
rosa_multiflora	Rmu_sc0004304.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227500
rosa_rugosa	Rorug07G0279600 Rorug07G0279600
rosa_samantha	Rh6CG157300 Rh7AG435200 Rh7BG407700 Rh7CG454200 Rh7DG423100
rosa_wichuraiana	Rw0G015340 Rw1G012280 Rw6G040830 Rw7G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	514
AciI	CCGC	5 cut(s)	133, 251, 272, 408, 512
AcsI	RAATTY	5 cut(s)	177, 460, 721, 765, 817
AcuI	CTGAAG	1 cut(s)	918
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	686, 828
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	8 cut(s)	28, 139, 457, 465, 603, 640, 668, 771
AluBI	AGCT	7 cut(s)	202, 207, 269, 506, 659, 752, 995
AluI	AGCT	7 cut(s)	202, 207, 269, 506, 659, 752, 995
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	532
AoxI	GGCC	3 cut(s)	307, 1034, 1048
ApaI	GGGCCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	506, 618, 906
ApoI	RAATTY	5 cut(s)	177, 460, 721, 765, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	4 cut(s)	241, 307, 308, 652
AsuHPI	GGTGA	2 cut(s)	106, 607
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	241, 652
BaeGI	GKGCMC	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BanII	GRGCYC	3 cut(s)	271, 294, 311
BarI	GAAGNNNNNNTAC	2 cut(s)	583, 615
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	493, 630, 918
BccI	CCATC	4 cut(s)	567, 806, 845, 1055
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	559
BisI	GCNGC	5 cut(s)	409, 507, 512, 619, 907
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	5 cut(s)	410, 508, 513, 620, 908
Bme18I	GGWCC	2 cut(s)	241, 652
BmgT120I	GGNCC	4 cut(s)	241, 307, 308, 652
BmiI	GGNNCC	4 cut(s)	243, 309, 310, 653
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	907
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
Bpu1102I	GCTNAGC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	220, 566
Bse1I	ACTGG	2 cut(s)	155, 1097
BseDI	CCNNGG	2 cut(s)	220, 566
BseGI	GGATG	2 cut(s)	538, 817
BseMII	CTCAG	3 cut(s)	217, 338, 510
BseNI	ACTGG	2 cut(s)	155, 1097
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	493, 630, 918
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	309, 1036, 1050
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	309, 1036, 1050
Bsp119I	TTCGAA	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	307
Bsp1286I	GDGCHC	3 cut(s)	271, 294, 311
Bsp1407I	TGTACA	2 cut(s)	684, 826
Bsp143I	GATC	2 cut(s)	169, 835
Bsp1720I	GCTNAGC	1 cut(s)	203
BspACI	CCGC	5 cut(s)	133, 251, 272, 408, 512
BspANI	GGCC	3 cut(s)	309, 1036, 1050
BspCNI	CTCAG	3 cut(s)	216, 337, 511
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	4 cut(s)	243, 309, 310, 653
BspQI	GCTCTTC	1 cut(s)	759
BspT104I	TTCGAA	1 cut(s)	87
BsrBI	CCGCTC	1 cut(s)	514
BsrGI	TGTACA	2 cut(s)	684, 826
BsrI	ACTGG	2 cut(s)	155, 1097
BssECI	CCNNGG	2 cut(s)	220, 566
BssMI	GATC	2 cut(s)	169, 835
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	5 cut(s)	84, 89, 759, 1080, 1097
BstACI	GRCGYC	1 cut(s)	261
BstAUI	TGTACA	2 cut(s)	684, 826
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	5 cut(s)	59, 203, 324, 519, 623
BstEII	GGTNACC	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	538, 817
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	2 cut(s)	172, 838
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	169, 835
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 377, 506
BstNSI	RCATGY	3 cut(s)	380, 582, 685
BstPI	GGTNACC	1 cut(s)	702
BstSFI	CTRYAG	1 cut(s)	559
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	493, 630, 918
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	309, 1036, 1050
BtsCI	GGATG	2 cut(s)	538, 817
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	4 cut(s)	241, 307, 308, 652
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	685, 827
CviAII	CATG	7 cut(s)	377, 412, 579, 682, 761, 776, 860
CviQI	GTAC	2 cut(s)	685, 827
DdeI	CTNAG	5 cut(s)	59, 203, 324, 519, 623
DpnI	GATC	2 cut(s)	171, 837
DpnII	GATC	2 cut(s)	169, 835
DraI	TTTAAA	1 cut(s)	789
Eam1104I	CTCTTC	5 cut(s)	84, 89, 759, 1080, 1097
EarI	CTCTTC	5 cut(s)	84, 89, 759, 1080, 1097
EciI	GGCGGA	2 cut(s)	240, 261
Ecl136II	GAGCTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	3 cut(s)	271, 294, 311
Eco47I	GGWCC	2 cut(s)	241, 652
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	918
Eco91I	GGTNACC	1 cut(s)	702
EcoICRI	GAGCTC	1 cut(s)	269
EcoO109I	RGGNCCY	3 cut(s)	307, 308, 652
EcoO65I	GGTNACC	1 cut(s)	702
EcoRI	GAATTC	3 cut(s)	177, 460, 721
EcoT14I	CCWWGG	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	3 cut(s)	271, 294, 311
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	7 cut(s)	380, 415, 582, 685, 764, 779, 863
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	7 cut(s)	376, 411, 578, 681, 760, 775, 859
Fnu4HI	GCNGC	5 cut(s)	409, 507, 512, 619, 907
FokI	GGATG	2 cut(s)	545, 824
FriOI	GRGCYC	3 cut(s)	271, 294, 311
Fsp4HI	GCNGC	5 cut(s)	409, 507, 512, 619, 907
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	5 cut(s)	409, 507, 512, 619, 907
HaeIII	GGCC	3 cut(s)	309, 1036, 1050
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	7 cut(s)	380, 415, 582, 685, 764, 779, 863
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HinfI	GANTC	2 cut(s)	247, 335
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	106, 607
Hpy166II	GTNNAC	2 cut(s)	148, 829
Hpy188I	TCNGA	5 cut(s)	334, 520, 738, 850, 1074
Hpy188III	TCNNGA	7 cut(s)	20, 28, 244, 393, 457, 761, 977
Hpy8I	GTNNAC	2 cut(s)	148, 829
Hpy99I	CGWCG	3 cut(s)	38, 263, 290
HpyAV	CCTTC	6 cut(s)	26, 112, 409, 642, 674, 1061
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	8 cut(s)	452, 681, 797, 843, 859, 906, 962, 1099
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 377, 506
HpyF3I	CTNAG	5 cut(s)	59, 203, 324, 519, 623
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	380, 415, 582, 685, 764, 779, 863
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	2 cut(s)	169, 835
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	2 cut(s)	266, 274
LpnPI	CCDG	9 cut(s)	136, 141, 277, 371, 494, 794, 1032, 1040, 1078
Lsp1109I	GCAGC	3 cut(s)	493, 630, 918
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	1 cut(s)	656
MaeIII	GTNAC	6 cut(s)	595, 632, 702, 876, 997, 1027
MalI	GATC	2 cut(s)	171, 837
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	2 cut(s)	169, 835
MboII	GAAGA	8 cut(s)	66, 71, 76, 746, 902, 1094, 1097, 1114
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	3 cut(s)	271, 294, 311
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	9 cut(s)	56, 63, 90, 215, 224, 293, 340, 1081, 1098
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	123, 788, 968
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	204, 377, 506
NdeII	GATC	2 cut(s)	169, 835
NlaIII	CATG	7 cut(s)	380, 415, 582, 685, 764, 779, 863
NlaIV	GGNNCC	4 cut(s)	243, 309, 310, 653
NmuCI	GTSAC	3 cut(s)	595, 632, 1027
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	3 cut(s)	380, 582, 685
NspV	TTCGAA	1 cut(s)	87
PagI	TCATGA	1 cut(s)	760
PciI	ACATGT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	410, 508, 513, 620, 908
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	652
PscI	ACATGT	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	652
PspEI	GGTNACC	1 cut(s)	702
PspN4I	GGNNCC	4 cut(s)	243, 309, 310, 653
PspOMI	GGGCCC	1 cut(s)	307
PspPI	GGNCC	4 cut(s)	241, 307, 308, 652
PspPPI	RGGWCCY	1 cut(s)	652
RsaI	GTAC	2 cut(s)	686, 828
RsaNI	GTAC	2 cut(s)	685, 827
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	123, 788, 968
SatI	GCNGC	5 cut(s)	409, 507, 512, 619, 907
Sau3AI	GATC	2 cut(s)	169, 835
Sau96I	GGNCC	4 cut(s)	241, 307, 308, 652
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	3 cut(s)	271, 294, 311
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	2 cut(s)	241, 652
SmiMI	CAYNNNNRTG	1 cut(s)	416
SsiI	CCGC	5 cut(s)	133, 251, 272, 408, 512
SspI	AATATT	3 cut(s)	607, 785, 973
SspMI	CTAG	1 cut(s)	656
SstI	GAGCTC	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	8 cut(s)	9, 21, 87, 216, 288, 583, 693, 976
TaqII	GACCGA	1 cut(s)	234
TatI	WGTACW	2 cut(s)	684, 826
TauI	GCSGC	2 cut(s)	411, 514
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	123, 788, 968
Tru9I	TTAA	3 cut(s)	123, 788, 968
TseFI	GTSAC	3 cut(s)	595, 632, 1027
TseI	GCWGC	3 cut(s)	506, 618, 906
Tsp45I	GTSAC	3 cut(s)	595, 632, 1027
TspDTI	ATGAA	6 cut(s)	428, 714, 764, 777, 876, 1101
VpaK11BI	GGWCC	2 cut(s)	241, 652
XapI	RAATTY	5 cut(s)	177, 460, 721, 765, 817
XceI	RCATGY	3 cut(s)	380, 582, 685
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	1 cut(s)	656
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.