Rh7AG435200

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003215
Physical Location & Seq
Reverse (-)
58632009 .. 58642245
10237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG435200.1

Sequence Viewer

Length: 1593 bp
ATGGTGAAAGCAGTGATCGGAGAGGAAACACAGCTCAAACTAGCCGAGGCTCGCCTCGAGCAATCCTCTTCTACCCCCGCCCAGGTCCTCTCTCTCTCTCTCTCTTCTCTCCACCAATACAATCACACTCATCGCCGATTCTCAAATTCTCCGTCTTCTTCTGTTTGTTGTGCGATTCAGGTGGGGCTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGCTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTTCCACTCTCTCTCAATTGACAAGGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGTGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGTGCCGCTCTCCGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGGTTACCTATATCTCACAAGAATTCATCAAATGTTCAGACTATGAGTGAAGCTCTTCGTCATGAAATTTCAATTCATGCTAAATATTTAAAAAGTGCAAAAGCCATGCTGGATGGAAATTTGGTTGTACACAATGATCTATGCACATCAGATGGTTTGCATGAAGTAGAATTGCTGTTACCATTTGTGGAAGATACTGAAGTATGCAGCCAAAAAGATGCTCTTGGTGTTCTTGCTTTTAGTGGTTCTGTTTGTTCCTTTGCATACTTAAATATTCGAGAACCAATTTCACAAGCTGTTGCTGATATAAAGGATGATATTATCACAAGTCTGCAAAGTAGACTAGATATCATCTGTGATGAGGCAGATGGAGAGACAGGTCCAATTGACACTGGCATCGAGAAAGCAAGAGATGATGCTGATAGCCAGGAAGTAGGAGATGGGATATCCAGTGGGACACCCGTATCCCAAATTGTACTTCAATCATTAAGAAAAGCATGCGGTCTTTCACTTCCTCGTCGAGTCTTTATTCCTTGGTTGGCTGGCACATTTGTGTGTGACTACCTACAACCATCCGAGACATTTGAGGTTCTAAAAGATCGTTGCGTGGAGTTGTTATCTATGGAAGTTCCAACAGATGCCTCAAAAATCTTGGAACCAGAAAGAGAAGCCCCCTCTGCAGTCACCAAATCCTTTTGGGATGTGGCGGTGCCTCTTTCCACAGCATCTAGCTCCTGTTTGGAAAAGGGTGGACTTGACGCATCAAGGGGTGAAAGTAGCCAAAAATCAACCGACACCACCGATGCCAAAATCGCTCCTAACATCATAGCTGCTGCTGTATTCCTTATCGTGGCTATCATTGTAGGATACATTCTAGTATCTGTCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

530

Amino Acids

57.79

Weight (kDa)

5.65

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 62 - 449 4.5e-100 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1408
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 1039
AciI CCGC 6 cut(s) 78, 251, 272, 512, 1200, 1406
AcsI RAATTY 5 cut(s) 145, 460, 721, 765, 817
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 3 cut(s) 686, 828, 1176
AfiI CCNNNNNNNGG 2 cut(s) 82, 1549
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 7 cut(s) 457, 465, 603, 640, 668, 771, 1181
AjnI CCWGG 2 cut(s) 81, 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 1161, 1193
AleI CACNNNNGTG 1 cut(s) 1250
AluBI AGCT 9 cut(s) 34, 202, 207, 269, 506, 752, 995, 1431, 1529
AluI AGCT 9 cut(s) 34, 202, 207, 269, 506, 752, 995, 1431, 1529
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 532, 1067, 1271
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 618, 906, 1529, 1532
ApoI RAATTY 5 cut(s) 145, 460, 721, 765, 817
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 209, 241
Asp700I GAANNNNTTC 1 cut(s) 753
AspS9I GGNCC 6 cut(s) 85, 241, 307, 308, 652, 1079
AsuHPI GGTGA 4 cut(s) 16, 607, 1375, 1481
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 4 cut(s) 85, 241, 652, 1079
BaeGI GKGCMC 1 cut(s) 311
BaeI ACNNNNGTAYC 4 cut(s) 885, 918, 1146, 1179
BanI GGYRCC 1 cut(s) 1408
BanII GRGCYC 4 cut(s) 189, 271, 294, 311
BarI GAAGNNNNNNTAC 2 cut(s) 583, 615
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 4 cut(s) 630, 918, 1516, 1519
BccI CCATC 6 cut(s) 567, 806, 845, 1061, 1133, 1279
BciT130I CCWGG 2 cut(s) 83, 1127
BciVI GTATCC 2 cut(s) 1174, 1559
BcoDI GTCTC 3 cut(s) 532, 1067, 1271
BfaI CTAG 4 cut(s) 41, 1043, 1428, 1574
BfmI CTRYAG 2 cut(s) 559, 1377
BfuI GTATCC 2 cut(s) 1174, 1559
BisI GCNGC 5 cut(s) 512, 619, 907, 1530, 1533
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 5 cut(s) 513, 620, 908, 1531, 1534
Bme1390I CCNGG 2 cut(s) 83, 1127
Bme18I GGWCC 4 cut(s) 85, 241, 652, 1079
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 6 cut(s) 85, 241, 307, 308, 652, 1079
BmiI GGNNCC 6 cut(s) 243, 309, 310, 653, 1356, 1410
BmrFI CCNGG 2 cut(s) 83, 1127
BmsI GCATC 7 cut(s) 907, 1104, 1105, 1327, 1433, 1469, 1492
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 736, 768
Bpu1102I GCTNAGC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 45, 81, 220, 566, 1232
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 1549
Bse1I ACTGG 2 cut(s) 1096, 1149
BseBI CCWGG 2 cut(s) 83, 1127
BseDI CCNNGG 5 cut(s) 45, 81, 220, 566, 1232
BseGI GGATG 5 cut(s) 538, 817, 1018, 1271, 1405
BseLI CCNNNNNNNGG 2 cut(s) 82, 1549
BseMII CTCAG 2 cut(s) 217, 338
BseNI ACTGG 2 cut(s) 1096, 1149
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 4 cut(s) 630, 918, 1516, 1519
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 1408
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 227, 1168
BslI CCNNNNNNNGG 2 cut(s) 82, 1549
BsmAI GTCTC 3 cut(s) 532, 1067, 1271
BsmFI GGGAC 2 cut(s) 227, 1168
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 4 cut(s) 189, 271, 294, 311
Bsp1407I TGTACA 2 cut(s) 684, 826
Bsp143I GATC 3 cut(s) 15, 835, 1297
Bsp1720I GCTNAGC 1 cut(s) 203
BspACI CCGC 6 cut(s) 78, 251, 272, 512, 1200, 1406
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 216, 337
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 6 cut(s) 243, 309, 310, 653, 1356, 1410
BspMAI CTGCAG 1 cut(s) 1381
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 1408
BsrBI CCGCTC 1 cut(s) 514
BsrGI TGTACA 2 cut(s) 684, 826
BsrI ACTGG 2 cut(s) 1096, 1149
BssECI CCNNGG 5 cut(s) 45, 81, 220, 566, 1232
BssMI GATC 3 cut(s) 15, 835, 1297
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 566, 1232
Bst2UI CCWGG 2 cut(s) 83, 1127
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 3 cut(s) 73, 109, 759
BstACI GRCGYC 1 cut(s) 261
BstAUI TGTACA 2 cut(s) 684, 826
BstC8I GCNNGC 4 cut(s) 52, 200, 1198, 1243
BstDEI CTNAG 3 cut(s) 203, 324, 623
BstEII GGTNACC 1 cut(s) 702
BstF5I GGATG 5 cut(s) 538, 817, 1018, 1271, 1405
BstKTI GATC 3 cut(s) 18, 838, 1300
BstMAI GTCTC 3 cut(s) 532, 1067, 1271
BstMBI GATC 3 cut(s) 15, 835, 1297
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 4 cut(s) 204, 377, 1376, 1511
BstNI CCWGG 2 cut(s) 83, 1127
BstNSI RCATGY 4 cut(s) 380, 582, 685, 1200
BstPI GGTNACC 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 81, 1125
BstSFI CTRYAG 2 cut(s) 559, 1377
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 4 cut(s) 630, 918, 1516, 1519
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 573
BsuI GTATCC 2 cut(s) 1174, 1559
BsuRI GGCC 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 5 cut(s) 538, 817, 1018, 1271, 1405
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 1089, 1156
Cac8I GCNNGC 4 cut(s) 52, 200, 1198, 1243
CciI TCATGA 1 cut(s) 760
Cfr13I GGNCC 6 cut(s) 85, 241, 307, 308, 652, 1079
CseI GACGC 2 cut(s) 269, 1466
Csp6I GTAC 3 cut(s) 685, 827, 1175
CviAII CATG 9 cut(s) 377, 412, 579, 682, 761, 776, 805, 860, 1197
CviQI GTAC 3 cut(s) 685, 827, 1175
DdeI CTNAG 3 cut(s) 203, 324, 623
DpnI GATC 3 cut(s) 17, 837, 1299
DpnII GATC 3 cut(s) 15, 835, 1297
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 3 cut(s) 73, 109, 759
EarI CTCTTC 3 cut(s) 73, 109, 759
EciI GGCGGA 2 cut(s) 240, 261
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 566, 1232
Eco24I GRGCYC 4 cut(s) 189, 271, 294, 311
Eco32I GATATC 2 cut(s) 1048, 1146
Eco47I GGWCC 4 cut(s) 85, 241, 652, 1079
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 702
EcoICRI GAGCTC 1 cut(s) 269
EcoO109I RGGNCCY 4 cut(s) 85, 307, 308, 652
EcoO65I GGTNACC 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 460, 721
EcoRII CCWGG 2 cut(s) 81, 1125
EcoRV GATATC 2 cut(s) 1048, 1146
EcoT14I CCWWGG 2 cut(s) 566, 1232
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 4 cut(s) 189, 271, 294, 311
ErhI CCWWGG 2 cut(s) 566, 1232
FaeI CATG 9 cut(s) 380, 415, 582, 685, 764, 779, 808, 863, 1200
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 2 cut(s) 227, 1168
FatI CATG 9 cut(s) 376, 411, 578, 681, 760, 775, 804, 859, 1196
FauI CCCGC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 5 cut(s) 512, 619, 907, 1530, 1533
FokI GGATG 5 cut(s) 545, 824, 1025, 1258, 1412
FriOI GRGCYC 4 cut(s) 189, 271, 294, 311
Fsp4HI GCNGC 5 cut(s) 512, 619, 907, 1530, 1533
FspBI CTAG 4 cut(s) 41, 1043, 1428, 1574
GluI GCNGC 5 cut(s) 512, 619, 907, 1530, 1533
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 264
HgaI GACGC 2 cut(s) 269, 1466
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 9 cut(s) 380, 415, 582, 685, 764, 779, 808, 863, 1200
HinfI GANTC 4 cut(s) 138, 175, 247, 1221
HpaII CCGG 1 cut(s) 264
HphI GGTGA 4 cut(s) 16, 607, 1375, 1481
Hpy166II GTNNAC 3 cut(s) 829, 1040, 1451
Hpy188I TCNGA 6 cut(s) 20, 334, 520, 738, 850, 1276
Hpy188III TCNNGA 6 cut(s) 244, 393, 457, 761, 977, 1099
Hpy8I GTNNAC 3 cut(s) 829, 1040, 1451
Hpy99I CGWCG 3 cut(s) 263, 290, 1221
HpyAV CCTTC 3 cut(s) 409, 642, 674
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 9 cut(s) 452, 681, 797, 843, 859, 906, 962, 1033, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 377, 1376, 1511
HpyF3I CTNAG 3 cut(s) 203, 324, 623
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 9 cut(s) 380, 415, 582, 685, 764, 779, 808, 863, 1200
Kzo9I GATC 3 cut(s) 15, 835, 1297
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 5 cut(s) 266, 274, 284, 1436, 1519
Lsp1109I GCAGC 4 cut(s) 630, 918, 1516, 1519
LweI GCATC 7 cut(s) 907, 1104, 1105, 1327, 1433, 1469, 1492
MaeI CTAG 4 cut(s) 41, 1043, 1428, 1574
MaeIII GTNAC 6 cut(s) 595, 632, 702, 876, 1256, 1381
MalI GATC 3 cut(s) 17, 837, 1299
MbiI CCGCTC 1 cut(s) 514
MboI GATC 3 cut(s) 15, 835, 1297
MboII GAAGA 6 cut(s) 60, 96, 147, 150, 746, 902
MfeI CAATTG 2 cut(s) 351, 1083
MhlI GDGCHC 4 cut(s) 189, 271, 294, 311
MlyI GAGTC 2 cut(s) 241, 1230
MmeI TCCRAC 1 cut(s) 1355
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 753
MseI TTAA 3 cut(s) 788, 968, 1187
MslI CAYNNNNRTG 3 cut(s) 416, 1250, 1252
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 2 cut(s) 83, 1127
MunI CAATTG 2 cut(s) 351, 1083
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 2 cut(s) 83, 1127
MwoI GCNNNNNNNGC 4 cut(s) 204, 377, 1376, 1511
NdeII GATC 3 cut(s) 15, 835, 1297
NlaIII CATG 9 cut(s) 380, 415, 582, 685, 764, 779, 808, 863, 1200
NlaIV GGNNCC 6 cut(s) 243, 309, 310, 653, 1356, 1410
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 4 cut(s) 595, 632, 1256, 1381
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 4 cut(s) 380, 582, 685, 1200
OliI CACNNNNGTG 1 cut(s) 1250
PaeI GCATGC 1 cut(s) 1200
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 760
PciI ACATGT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 2 cut(s) 138, 175
PkrI GCNGC 5 cut(s) 513, 620, 908, 1531, 1534
PleI GAGTC 2 cut(s) 241, 1229
PpsI GAGTC 2 cut(s) 241, 1229
PpuMI RGGWCCY 2 cut(s) 85, 652
PscI ACATGT 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 271
Psp5II RGGWCCY 2 cut(s) 85, 652
Psp6I CCWGG 2 cut(s) 81, 1125
PspEI GGTNACC 1 cut(s) 702
PspGI CCWGG 2 cut(s) 81, 1125
PspN4I GGNNCC 6 cut(s) 243, 309, 310, 653, 1356, 1410
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 6 cut(s) 85, 241, 307, 308, 652, 1079
PspPPI RGGWCCY 2 cut(s) 85, 652
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 1381
RsaI GTAC 3 cut(s) 686, 828, 1176
RsaNI GTAC 3 cut(s) 685, 827, 1175
RseI CAYNNNNRTG 3 cut(s) 416, 1250, 1252
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 3 cut(s) 788, 968, 1187
SatI GCNGC 5 cut(s) 512, 619, 907, 1530, 1533
Sau3AI GATC 3 cut(s) 15, 835, 1297
Sau96I GGNCC 6 cut(s) 85, 241, 307, 308, 652, 1079
SchI GAGTC 2 cut(s) 241, 1230
ScrFI CCNGG 2 cut(s) 83, 1127
SduI GDGCHC 4 cut(s) 189, 271, 294, 311
SfaNI GCATC 7 cut(s) 907, 1104, 1105, 1327, 1433, 1469, 1492
SfcI CTRYAG 2 cut(s) 559, 1377
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 4 cut(s) 85, 241, 652, 1079
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 416, 1250, 1252
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 1200
SsiI CCGC 6 cut(s) 78, 251, 272, 512, 1200, 1406
SspI AATATT 3 cut(s) 607, 785, 973
SspMI CTAG 4 cut(s) 41, 1043, 1428, 1574
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 81, 1125
StyI CCWWGG 2 cut(s) 566, 1232
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 8 cut(s) 57, 216, 288, 583, 693, 976, 1098, 1219
TaqII GACCGA 1 cut(s) 234
TatI WGTACW 3 cut(s) 684, 826, 1174
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 2 cut(s) 138, 175
Tru1I TTAA 3 cut(s) 788, 968, 1187
Tru9I TTAA 3 cut(s) 788, 968, 1187
TscAI CASTG 3 cut(s) 18, 1096, 1156
TseFI GTSAC 4 cut(s) 595, 632, 1256, 1381
TseI GCWGC 4 cut(s) 618, 906, 1529, 1532
Tsp45I GTSAC 4 cut(s) 595, 632, 1256, 1381
TspDTI ATGAA 5 cut(s) 428, 714, 764, 777, 876
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 18, 1096, 1156
VpaK11BI GGWCC 4 cut(s) 85, 241, 652, 1079
XapI RAATTY 5 cut(s) 145, 460, 721, 765, 817
XceI RCATGY 4 cut(s) 380, 582, 685, 1200
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 4 cut(s) 41, 1043, 1428, 1574
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.