RchiOBHm_Chr7g0233191

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003215
Physical Location & Seq
Reverse (-)
57617211 .. 57626950
9740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20901

Sequence Viewer

Length: 1497 bp
ATGGTGAAAGCAGTGATCGGAGAGGAAACCCAGCTCAAACTAGCCGAGGCTCGCCTCGAGCAATCCTCTTCTACCCCAGCCCAGGTGGGGCTCATCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCTACTCTCTCTCAATTGACAAGGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGTGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTTGATATTAGGTTACCTATATCTCACAAGAATTCATCAAATGTTCAGACTATGAGTGAAGCTCTTCGTCATGAAATTTCAATTCATGCTAAATATTTAAAAAGTGCAAAAGCCATGCTGGATGGAAATTTGGTTGTACACAATGATCTATGCACATCAGATGGTTTGCATGAAGTAGAATTGCTGTTACCATTTGTGGAAGATACTGAAGTATGCAGCCAAAAAGATGCTCTTGGTGTTCTTGCTTTTAGTGGTTCTGTTTGTTCCTTTGCATACTTAAATATTCGAGAACCAATTTCACAAGCTGTTGCTGATATAAAGGATGATATTATCACAAGTCTGCAAAGTAGACTAGATATCATCTGTGATGAGGCAGATGGAGAGACAGGTCCAATTGACACTGGCATCGAGAAAGCAAGAGATGATGCTGATAGCCAGGAAGTAGGAGATGGGATATCCAGTGGGACACCCGTATCCCAAATTGTACTTCAATCATTAAGAAAAGCATGCGGTCTTTCACTTCCTCGTCGAGTCTTTATTCCTTGGTTGGCTGGCACATTTGTGTGTGACTACCTACAACCATCCGAGACATTTGAGGTTCTAAAAGATCGTTGTGTGGAGTTGTTATCTATGGAAGTTCCAACAGATGCCTCAAAAATCTTGGAACCAGAAAGAGAAGCCCCCTCTGCAGTCACCAAATCCTTTTGGGATGTGGCGGTGCCTCTTTCCACAGCATCTAGCTCCTGTTTGGAAAAGGGTGGACCTGACGCATCAAGGGGTGAAAGTAGCCAAAAATCAACCGACACCACCGATGCCAAAATCACTCCTAACATCATAGCTGCTGCTGTATTCCTTATCGTGGCTATCATTGTAGGATACATTCTAGTATCTGTCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

498

Amino Acids

54.21

Weight (kDa)

5.24

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 30 - 417 3.1e-101 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1312
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 943
AciI CCGC 5 cut(s) 155, 176, 416, 1104, 1310
AcsI RAATTY 4 cut(s) 364, 625, 669, 721
AcuI CTGAAG 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 590, 732, 1080
AfiI CCNNNNNNNGG 3 cut(s) 82, 87, 1453
AflIII ACRYGT 1 cut(s) 482
AgsI TTSAA 7 cut(s) 361, 369, 507, 544, 572, 675, 1085
AjnI CCWGG 2 cut(s) 81, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AleI CACNNNNGTG 1 cut(s) 1154
AluBI AGCT 9 cut(s) 34, 106, 111, 173, 410, 656, 899, 1335, 1433
AluI AGCT 9 cut(s) 34, 106, 111, 173, 410, 656, 899, 1335, 1433
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 3 cut(s) 436, 971, 1175
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 211
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 5 cut(s) 410, 522, 810, 1433, 1436
ApoI RAATTY 4 cut(s) 364, 625, 669, 721
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 6 cut(s) 145, 211, 212, 556, 983, 1355
AsuHPI GGTGA 4 cut(s) 16, 511, 1279, 1385
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 4 cut(s) 145, 556, 983, 1355
BaeGI GKGCMC 1 cut(s) 215
BaeI ACNNNNGTAYC 4 cut(s) 789, 822, 1050, 1083
BanI GGYRCC 1 cut(s) 1312
BanII GRGCYC 4 cut(s) 93, 175, 198, 215
BarI GAAGNNNNNNTAC 2 cut(s) 487, 519
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 5 cut(s) 397, 534, 822, 1420, 1423
BccI CCATC 6 cut(s) 471, 710, 749, 965, 1037, 1183
BciT130I CCWGG 2 cut(s) 83, 1031
BciVI GTATCC 2 cut(s) 1078, 1463
BcoDI GTCTC 3 cut(s) 436, 971, 1175
BfaI CTAG 4 cut(s) 41, 947, 1332, 1478
BfmI CTRYAG 2 cut(s) 463, 1281
BfuI GTATCC 2 cut(s) 1078, 1463
BisI GCNGC 6 cut(s) 411, 416, 523, 811, 1434, 1437
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 6 cut(s) 412, 417, 524, 812, 1435, 1438
Bme1390I CCNGG 2 cut(s) 83, 1031
Bme18I GGWCC 4 cut(s) 145, 556, 983, 1355
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 6 cut(s) 145, 211, 212, 556, 983, 1355
BmiI GGNNCC 6 cut(s) 147, 213, 214, 557, 1260, 1314
BmrFI CCNGG 2 cut(s) 83, 1031
BmsI GCATC 7 cut(s) 811, 1008, 1009, 1231, 1337, 1373, 1396
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 640, 672
Bpu1102I GCTNAGC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 5 cut(s) 45, 81, 124, 470, 1136
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 87, 1453
Bse1I ACTGG 2 cut(s) 1000, 1053
BseBI CCWGG 2 cut(s) 83, 1031
BseDI CCNNGG 5 cut(s) 45, 81, 124, 470, 1136
BseGI GGATG 5 cut(s) 442, 721, 922, 1175, 1309
BseLI CCNNNNNNNGG 3 cut(s) 82, 87, 1453
BseMII CTCAG 3 cut(s) 121, 242, 414
BseNI ACTGG 2 cut(s) 1000, 1053
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 5 cut(s) 397, 534, 822, 1420, 1423
BseYI CCCAGC 2 cut(s) 30, 76
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 1312
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 131, 1072
BslI CCNNNNNNNGG 3 cut(s) 82, 87, 1453
BsmAI GTCTC 3 cut(s) 436, 971, 1175
BsmFI GGGAC 2 cut(s) 131, 1072
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 4 cut(s) 93, 175, 198, 215
Bsp1407I TGTACA 2 cut(s) 588, 730
Bsp143I GATC 3 cut(s) 15, 739, 1201
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 5 cut(s) 155, 176, 416, 1104, 1310
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 3 cut(s) 120, 241, 415
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 6 cut(s) 147, 213, 214, 557, 1260, 1314
BspMAI CTGCAG 1 cut(s) 1285
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 1312
BsrBI CCGCTC 1 cut(s) 418
BsrGI TGTACA 2 cut(s) 588, 730
BsrI ACTGG 2 cut(s) 1000, 1053
BssECI CCNNGG 5 cut(s) 45, 81, 124, 470, 1136
BssMI GATC 3 cut(s) 15, 739, 1201
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 470, 1136
Bst2UI CCWGG 2 cut(s) 83, 1031
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 73, 663
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 2 cut(s) 588, 730
BstC8I GCNNGC 4 cut(s) 52, 104, 1102, 1147
BstDEI CTNAG 4 cut(s) 107, 228, 423, 527
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 5 cut(s) 442, 721, 922, 1175, 1309
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 3 cut(s) 18, 742, 1204
BstMAI GTCTC 3 cut(s) 436, 971, 1175
BstMBI GATC 3 cut(s) 15, 739, 1201
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 108, 281, 410, 1280
BstNI CCWGG 2 cut(s) 83, 1031
BstNSI RCATGY 4 cut(s) 284, 486, 589, 1104
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 2 cut(s) 81, 1029
BstSFI CTRYAG 2 cut(s) 463, 1281
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 5 cut(s) 397, 534, 822, 1420, 1423
BstXI CCANNNNNNTGG 1 cut(s) 477
BsuI GTATCC 2 cut(s) 1078, 1463
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 5 cut(s) 442, 721, 922, 1175, 1309
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 993, 1060
Cac8I GCNNGC 4 cut(s) 52, 104, 1102, 1147
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 6 cut(s) 145, 211, 212, 556, 983, 1355
CseI GACGC 2 cut(s) 173, 1370
Csp6I GTAC 3 cut(s) 589, 731, 1079
CviAII CATG 9 cut(s) 281, 316, 483, 586, 665, 680, 709, 764, 1101
CviQI GTAC 3 cut(s) 589, 731, 1079
DdeI CTNAG 4 cut(s) 107, 228, 423, 527
DpnI GATC 3 cut(s) 17, 741, 1203
DpnII GATC 3 cut(s) 15, 739, 1201
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 73, 663
EarI CTCTTC 2 cut(s) 73, 663
EciI GGCGGA 2 cut(s) 144, 165
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 470, 1136
Eco24I GRGCYC 4 cut(s) 93, 175, 198, 215
Eco32I GATATC 2 cut(s) 952, 1050
Eco47I GGWCC 4 cut(s) 145, 556, 983, 1355
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 3 cut(s) 211, 212, 556
EcoO65I GGTNACC 1 cut(s) 606
EcoRI GAATTC 2 cut(s) 364, 625
EcoRII CCWGG 2 cut(s) 81, 1029
EcoRV GATATC 2 cut(s) 952, 1050
EcoT14I CCWWGG 2 cut(s) 470, 1136
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 4 cut(s) 93, 175, 198, 215
ErhI CCWWGG 2 cut(s) 470, 1136
FaeI CATG 9 cut(s) 284, 319, 486, 589, 668, 683, 712, 767, 1104
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 2 cut(s) 131, 1072
FatI CATG 9 cut(s) 280, 315, 482, 585, 664, 679, 708, 763, 1100
FblI GTMKAC 1 cut(s) 943
Fnu4HI GCNGC 6 cut(s) 411, 416, 523, 811, 1434, 1437
FokI GGATG 5 cut(s) 449, 728, 929, 1162, 1316
FriOI GRGCYC 4 cut(s) 93, 175, 198, 215
Fsp4HI GCNGC 6 cut(s) 411, 416, 523, 811, 1434, 1437
FspBI CTAG 4 cut(s) 41, 947, 1332, 1478
GlaI GCGC 1 cut(s) 414
GluI GCNGC 6 cut(s) 411, 416, 523, 811, 1434, 1437
GsaI CCCAGC 2 cut(s) 34, 80
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 168
HgaI GACGC 2 cut(s) 173, 1370
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 9 cut(s) 284, 319, 486, 589, 668, 683, 712, 767, 1104
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 3 cut(s) 151, 239, 1125
HpaII CCGG 1 cut(s) 168
HphI GGTGA 4 cut(s) 16, 511, 1279, 1385
Hpy166II GTNNAC 3 cut(s) 733, 944, 1355
Hpy188I TCNGA 6 cut(s) 20, 238, 424, 642, 754, 1180
Hpy188III TCNNGA 6 cut(s) 148, 297, 361, 665, 881, 1003
Hpy8I GTNNAC 3 cut(s) 733, 944, 1355
Hpy99I CGWCG 3 cut(s) 167, 194, 1125
HpyAV CCTTC 3 cut(s) 313, 546, 578
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 9 cut(s) 356, 585, 701, 747, 763, 810, 866, 937, 1283
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 281, 410, 1280
HpyF3I CTNAG 4 cut(s) 107, 228, 423, 527
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 9 cut(s) 284, 319, 486, 589, 668, 683, 712, 767, 1104
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 15, 739, 1201
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 3 cut(s) 170, 178, 1340
Lsp1109I GCAGC 5 cut(s) 397, 534, 822, 1420, 1423
LweI GCATC 7 cut(s) 811, 1008, 1009, 1231, 1337, 1373, 1396
MaeI CTAG 4 cut(s) 41, 947, 1332, 1478
MaeIII GTNAC 6 cut(s) 499, 536, 606, 780, 1160, 1285
MalI GATC 3 cut(s) 17, 741, 1203
MbiI CCGCTC 1 cut(s) 418
MboI GATC 3 cut(s) 15, 739, 1201
MboII GAAGA 3 cut(s) 60, 650, 806
MfeI CAATTG 2 cut(s) 255, 987
MhlI GDGCHC 4 cut(s) 93, 175, 198, 215
MlyI GAGTC 2 cut(s) 145, 1134
MmeI TCCRAC 1 cut(s) 1259
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 3 cut(s) 692, 872, 1091
MslI CAYNNNNRTG 3 cut(s) 320, 1154, 1156
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 83, 1031
MunI CAATTG 2 cut(s) 255, 987
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 2 cut(s) 83, 1031
MwoI GCNNNNNNNGC 4 cut(s) 108, 281, 410, 1280
NdeII GATC 3 cut(s) 15, 739, 1201
NlaIII CATG 9 cut(s) 284, 319, 486, 589, 668, 683, 712, 767, 1104
NlaIV GGNNCC 6 cut(s) 147, 213, 214, 557, 1260, 1314
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 4 cut(s) 499, 536, 1160, 1285
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 4 cut(s) 284, 486, 589, 1104
OliI CACNNNNGTG 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1104
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 664
PciI ACATGT 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 6 cut(s) 412, 417, 524, 812, 1435, 1438
PleI GAGTC 2 cut(s) 145, 1133
PpsI GAGTC 2 cut(s) 145, 1133
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 81, 1029
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 2 cut(s) 30, 76
PspGI CCWGG 2 cut(s) 81, 1029
PspN4I GGNNCC 6 cut(s) 147, 213, 214, 557, 1260, 1314
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 6 cut(s) 145, 211, 212, 556, 983, 1355
PspPPI RGGWCCY 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 1285
RsaI GTAC 3 cut(s) 590, 732, 1080
RsaNI GTAC 3 cut(s) 589, 731, 1079
RseI CAYNNNNRTG 3 cut(s) 320, 1154, 1156
SacI GAGCTC 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 3 cut(s) 692, 872, 1091
SatI GCNGC 6 cut(s) 411, 416, 523, 811, 1434, 1437
Sau3AI GATC 3 cut(s) 15, 739, 1201
Sau96I GGNCC 6 cut(s) 145, 211, 212, 556, 983, 1355
SchI GAGTC 2 cut(s) 145, 1134
ScrFI CCNGG 2 cut(s) 83, 1031
SduI GDGCHC 4 cut(s) 93, 175, 198, 215
SfaNI GCATC 7 cut(s) 811, 1008, 1009, 1231, 1337, 1373, 1396
SfcI CTRYAG 2 cut(s) 463, 1281
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 4 cut(s) 145, 556, 983, 1355
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 320, 1154, 1156
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 1104
SsiI CCGC 5 cut(s) 155, 176, 416, 1104, 1310
SspI AATATT 3 cut(s) 511, 689, 877
SspMI CTAG 4 cut(s) 41, 947, 1332, 1478
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 81, 1029
StyI CCWWGG 2 cut(s) 470, 1136
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 7 cut(s) 57, 120, 192, 487, 880, 1002, 1123
TaqII GACCGA 1 cut(s) 138
TatI WGTACW 3 cut(s) 588, 730, 1078
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 692, 872, 1091
Tru9I TTAA 3 cut(s) 692, 872, 1091
TscAI CASTG 3 cut(s) 18, 1000, 1060
TseFI GTSAC 4 cut(s) 499, 536, 1160, 1285
TseI GCWGC 5 cut(s) 410, 522, 810, 1433, 1436
Tsp45I GTSAC 4 cut(s) 499, 536, 1160, 1285
TspDTI ATGAA 5 cut(s) 332, 618, 668, 681, 780
TspRI CASTG 3 cut(s) 18, 1000, 1060
VpaK11BI GGWCC 4 cut(s) 145, 556, 983, 1355
XapI RAATTY 4 cut(s) 364, 625, 669, 721
XceI RCATGY 4 cut(s) 284, 486, 589, 1104
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 943
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 4 cut(s) 41, 947, 1332, 1478
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.