MD15G1392600.v1.1

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003215
Physical Location & Seq
Reverse (-)
48981077 .. 48988062
6986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1392600.v1.1.491

Sequence Viewer

Length: 1494 bp
ATGGTGAAAGCCGTCGTCGGCGAGGAAACCCAGCTCAAACTAGCCGAGGATCGCCTCGAGAAATCCTCCACCCCCGTGCAGGTGGGGCTCCTCATAGGCAAGCTCAGCTCCTCTCTAGACCGAGGCTTCGTCTTCGATTTGATCCCAACGCCGCCGAACGACGCCGGAGCGCCTGCTTGCTCCGTCCTCGAGCCTGCCAAGGACGACAAGAGAAAGGGGCCTAAACCCAAATCTCAGCCCTCCGATTCCTTCTCTCTCTCCATTGACAAGGACTGGGTCGCTGAACATGCCCGTCAGGTGTCTAGAATGTTAGTGGGTGGCATGAAAGTGGTTGGCATATACATTTGGGCTAGTGATAGCGCTTTTAAGAATTCGAACATCACGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCAGCGCCCCTCTCAGAGATTGATTGGGATGAGAGACTGCTTATTCACATTTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTGTGCAGTAGCTTCAAATATTACATCAAGTAGCCTAAGGCCTTGTGACTTCAAAATGGGAAGGGTCCTAAATTCCCTTCAACATTTTAGGTGCATGTACAACTTTGATATCAGATTGCCCATATTTCACAAGAATTCATCAAATCTCCAAACTTTTAGTGAAGCCCTTTGTCATGGTATTTCAGTTCATGCGAAAGATTTAAGAAGTGCAAAAGCCATGTTTGATGGAAATTTGGTTGTTAACGATGATCTATGCACATCGGATGGTCTGCATGAAGTCGAGTTGCTTCTACCATTTATGAAAGATACTGAAGCTTGCAGCCAGAAGGATACTGCTGGTGTTGTTGATTTTAGCGGTTCTGTGTGTTCCTTTGCATTTTTAAATCCCAAAGAACCAATTTCACAAGCTGTTGCTGATATTAAGGATGACATAATCACGAGTCTGCAGAGTAGACTAGATATCATCTGTGATGAGGCAGATGGCGAGGTGGGTCCAACTGAAACTAGTGGCCAGCAAGCAAGAAATGGTGCTGATATTCAGGAACCAAGAGATGGGATATCCAGTGAAACACCTGTTTCTCAAATTGTTCTTCAATCATTCAGACAATCATGCAATCTTTCACTTCCCCGAAGAGTCTTTGTTCCTTGGTTAGCGGGTACATTTGTGTGTGACTACCTACAGCCATCCGAGACATTTGAGGTTCTGAAAGATCGATGTGTCGAGTTGTTGTCTATGGAAGCTCCAGCAGATGACTCAACAATCTTGGAACCAGAAATAGACGCCCCATCTGCAGTGACCAAATCTTTCTGGGATGTGGTGGTGCCGCTTCCCTCGGCATCTGACTCCTGTTTGGAGAAGAGTGGAATCGAAAAATTAAGGGGAGAAAGTAGCCGAAAATCTACAGAGTTCTCTAATGTCAACGTCATGGCTGCTGGTATATTCCTTCTTCTCTCTATCATTATAGGATACATTCTCATATTCGTAAGGAGATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

498

Amino Acids

54.5

Weight (kDa)

5.12

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 29 - 419 3.1e-104 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 1318
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 949
AciI CCGC 4 cut(s) 152, 852, 1151, 1322
AclWI GGATC 2 cut(s) 57, 136
AcoI YGGCCR 1 cut(s) 1006
AcsI RAATTY 4 cut(s) 370, 568, 631, 727
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 2 cut(s) 162, 1278
AfaI GTAC 2 cut(s) 596, 1156
AfeI AGCGCT 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 79, 1049
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 4 cut(s) 513, 550, 578, 1091
AhlI ACTAGT 1 cut(s) 1001
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 7 cut(s) 34, 103, 108, 509, 812, 905, 1238
AluI AGCT 7 cut(s) 34, 103, 108, 509, 812, 905, 1238
Alw26I GTCTC 2 cut(s) 442, 1181
AlwI GGATC 2 cut(s) 57, 136
Ama87I CYCGRG 2 cut(s) 56, 188
Aor51HI AGCGCT 1 cut(s) 361
AoxI GGCC 3 cut(s) 218, 536, 1006
ApeKI GCWGC 3 cut(s) 416, 816, 1427
ApoI RAATTY 4 cut(s) 370, 568, 631, 727
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 3 cut(s) 172, 362, 421
AspS9I GGNCC 3 cut(s) 218, 562, 989
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 2 cut(s) 56, 188
AvaII GGWCC 2 cut(s) 562, 989
AxyI CCTNAGG 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 1146, 1179
BalI TGGCCA 1 cut(s) 1008
BanI GGYRCC 1 cut(s) 1318
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 428, 828, 1414
BccI CCATC 6 cut(s) 716, 755, 971, 1043, 1189, 1291
BciVI GTATCC 2 cut(s) 820, 1457
BcoDI GTCTC 2 cut(s) 442, 1181
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 6 cut(s) 41, 116, 303, 351, 953, 1002
BfmI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
BfoI RGCGCY 3 cut(s) 173, 363, 422
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 2 cut(s) 820, 1457
BisI GCNGC 5 cut(s) 152, 417, 817, 1322, 1428
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 5 cut(s) 153, 418, 818, 1323, 1429
Bme18I GGWCC 2 cut(s) 562, 989
BmeT110I CYCGRG 2 cut(s) 56, 188
BmgT120I GGNCC 3 cut(s) 218, 562, 989
BmiI GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 1343
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 1224
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 1210
BsaHI GRCGYC 2 cut(s) 162, 1278
BsaJI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 1049
Bse1I ACTGG 2 cut(s) 278, 1059
Bse21I CCTNAGG 1 cut(s) 533
BseCI ATCGAT 1 cut(s) 1210
BseDI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
BseGI GGATG 5 cut(s) 448, 766, 928, 1181, 1315
BseLI CCNNNNNNNGG 2 cut(s) 79, 1049
BseMII CTCAG 3 cut(s) 118, 248, 441
BseNI ACTGG 2 cut(s) 278, 1059
BseRI GAGGAG 2 cut(s) 80, 100
BseXI GCAGC 3 cut(s) 428, 828, 1414
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 2 cut(s) 98, 522
BshFI GGCC 3 cut(s) 220, 538, 1008
BshNI GGYRCC 1 cut(s) 1318
BshVI ATCGAT 1 cut(s) 1210
BsiHKCI CYCGRG 2 cut(s) 56, 188
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 79, 1049
BsmAI GTCTC 2 cut(s) 442, 1181
BsnI GGCC 3 cut(s) 220, 538, 1008
BsoBI CYCGRG 2 cut(s) 56, 188
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 5 cut(s) 49, 141, 745, 1207, 1487
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 4 cut(s) 152, 852, 1151, 1322
BspANI GGCC 3 cut(s) 220, 538, 1008
BspCNI CTCAG 3 cut(s) 117, 247, 440
BspDI ATCGAT 1 cut(s) 1210
BspLI GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
BspMAI CTGCAG 2 cut(s) 945, 1291
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 57, 136
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1318
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 2 cut(s) 278, 1059
BssECI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
BssMI GATC 5 cut(s) 49, 141, 745, 1207, 1487
BssNI GRCGYC 2 cut(s) 162, 1278
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 3 cut(s) 198, 476, 1142
Bst2BI CACGAG 1 cut(s) 934
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 1123, 1349
BstACI GRCGYC 2 cut(s) 162, 1278
BstAUI TGTACA 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 7 cut(s) 101, 174, 178, 195, 814, 1010, 1014
BstDEI CTNAG 4 cut(s) 104, 234, 427, 533
BstF5I GGATG 5 cut(s) 448, 766, 928, 1181, 1315
BstH2I RGCGCY 3 cut(s) 173, 363, 422
BstHHI GCGC 3 cut(s) 172, 362, 421
BstKTI GATC 5 cut(s) 52, 144, 748, 1210, 1490
BstMAI GTCTC 2 cut(s) 442, 1181
BstMBI GATC 5 cut(s) 49, 141, 745, 1207, 1487
BstMWI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
BstNSI RCATGY 3 cut(s) 290, 492, 595
BstSFI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
BstV1I GCAGC 3 cut(s) 428, 828, 1414
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 1210
Bsu36I CCTNAGG 1 cut(s) 533
BsuI GTATCC 2 cut(s) 820, 1457
BsuRI GGCC 3 cut(s) 220, 538, 1008
BsuTUI ATCGAT 1 cut(s) 1210
BtsCI GGATG 5 cut(s) 448, 766, 928, 1181, 1315
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 2 cut(s) 1066, 1296
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 7 cut(s) 101, 174, 178, 195, 814, 1010, 1014
CfoI GCGC 3 cut(s) 172, 362, 421
Cfr13I GGNCC 3 cut(s) 218, 562, 989
ClaI ATCGAT 1 cut(s) 1210
CseI GACGC 2 cut(s) 170, 1286
Csp6I GTAC 2 cut(s) 595, 1155
CviQI GTAC 2 cut(s) 595, 1155
DdeI CTNAG 4 cut(s) 104, 234, 427, 533
DpnI GATC 5 cut(s) 51, 143, 747, 1209, 1489
DpnII GATC 5 cut(s) 49, 141, 745, 1207, 1487
DraI TTTAAA 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 1006
Eam1104I CTCTTC 2 cut(s) 1123, 1349
EarI CTCTTC 2 cut(s) 1123, 1349
Eco130I CCWWGG 3 cut(s) 198, 476, 1142
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 3 cut(s) 607, 958, 1056
Eco47I GGWCC 2 cut(s) 562, 989
Eco47III AGCGCT 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 828
Eco81I CCTNAGG 1 cut(s) 533
Eco88I CYCGRG 2 cut(s) 56, 188
EcoO109I RGGNCCY 2 cut(s) 218, 562
EcoRI GAATTC 2 cut(s) 370, 631
EcoRV GATATC 3 cut(s) 607, 958, 1056
EcoT14I CCWWGG 3 cut(s) 198, 476, 1142
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 198, 476, 1142
FauI CCCGC 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 5 cut(s) 152, 417, 817, 1322, 1428
FokI GGATG 5 cut(s) 455, 773, 935, 1168, 1322
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 5 cut(s) 152, 417, 817, 1322, 1428
FspBI CTAG 6 cut(s) 41, 116, 303, 351, 953, 1002
GlaI GCGC 3 cut(s) 171, 361, 420
GluI GCNGC 5 cut(s) 152, 417, 817, 1322, 1428
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 1224
HaeII RGCGCY 3 cut(s) 173, 363, 422
HaeIII GGCC 3 cut(s) 220, 538, 1008
HapII CCGG 1 cut(s) 165
HgaI GACGC 2 cut(s) 170, 1286
HhaI GCGC 3 cut(s) 172, 362, 421
Hin1I GRCGYC 2 cut(s) 162, 1278
Hin6I GCGC 3 cut(s) 170, 360, 419
HinP1I GCGC 3 cut(s) 170, 360, 419
HincII GTYRAC 2 cut(s) 739, 1417
HindII GTYRAC 2 cut(s) 739, 1417
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 6 cut(s) 245, 937, 1131, 1250, 1340, 1362
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 486, 739, 950, 1417
Hpy188I TCNGA 8 cut(s) 244, 430, 611, 760, 1100, 1186, 1203, 1339
Hpy188III TCNNGA 5 cut(s) 58, 116, 303, 934, 1037
Hpy8I GTNNAC 4 cut(s) 486, 739, 950, 1417
Hpy99I CGWCG 3 cut(s) 17, 20, 164
HpyAV CCTTC 5 cut(s) 259, 552, 584, 817, 1451
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 1419
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
HpyF3I CTNAG 4 cut(s) 104, 234, 427, 533
HpySE526I ACGT 1 cut(s) 1419
Hsp92I GRCGYC 2 cut(s) 162, 1278
HspAI GCGC 3 cut(s) 170, 360, 419
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 5 cut(s) 49, 141, 745, 1207, 1487
LmnI GCTCC 5 cut(s) 93, 113, 167, 185, 1243
Lsp1109I GCAGC 3 cut(s) 428, 828, 1414
LweI GCATC 1 cut(s) 1343
MaeI CTAG 6 cut(s) 41, 116, 303, 351, 953, 1002
MaeII ACGT 1 cut(s) 1419
MaeIII GTNAC 3 cut(s) 542, 1166, 1291
MalI GATC 5 cut(s) 51, 143, 747, 1209, 1489
MboI GATC 5 cut(s) 49, 141, 745, 1207, 1487
MboII GAAGA 5 cut(s) 124, 1079, 1140, 1366, 1436
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 1008
MluCI AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
MluNI TGGCCA 1 cut(s) 1008
MlyI GAGTC 4 cut(s) 946, 1140, 1244, 1334
MmeI TCCRAC 1 cut(s) 1016
Mox20I TGGCCA 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 1008
MseI TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
MslI CAYNNNNRTG 3 cut(s) 74, 326, 1162
Msp20I TGGCCA 1 cut(s) 1008
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
NdeII GATC 5 cut(s) 49, 141, 745, 1207, 1487
NlaIV GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
NmeAIII GCCGAG 2 cut(s) 70, 1310
NmuCI GTSAC 3 cut(s) 542, 1166, 1291
NspI RCATGY 3 cut(s) 290, 492, 595
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 74
PaeR7I CTCGAG 2 cut(s) 56, 188
PaqCI CACCTGC 1 cut(s) 70
PceI AGGCCT 1 cut(s) 538
PciI ACATGT 1 cut(s) 488
PfeI GAWTC 2 cut(s) 245, 1362
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 5 cut(s) 153, 418, 818, 1323, 1429
PleI GAGTC 4 cut(s) 945, 1139, 1244, 1334
PpsI GAGTC 4 cut(s) 945, 1139, 1244, 1334
PpuMI RGGWCCY 1 cut(s) 562
PscI ACATGT 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
PspPI GGNCC 3 cut(s) 218, 562, 989
PspPPI RGGWCCY 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 188
PstI CTGCAG 2 cut(s) 945, 1291
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 2 cut(s) 596, 1156
RsaNI GTAC 2 cut(s) 595, 1155
RseI CAYNNNNRTG 3 cut(s) 74, 326, 1162
SaqAI TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
SatI GCNGC 5 cut(s) 152, 417, 817, 1322, 1428
Sau3AI GATC 5 cut(s) 49, 141, 745, 1207, 1487
Sau96I GGNCC 3 cut(s) 218, 562, 989
SchI GAGTC 4 cut(s) 946, 1140, 1244, 1334
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 1343
SfcI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
Sfr274I CTCGAG 2 cut(s) 56, 188
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 2 cut(s) 562, 989
SlaI CTCGAG 2 cut(s) 56, 188
SmiMI CAYNNNNRTG 3 cut(s) 74, 326, 1162
SmlI CTYRAG 2 cut(s) 56, 188
SmoI CTYRAG 2 cut(s) 56, 188
SpeI ACTAGT 1 cut(s) 1001
Sse9I AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 4 cut(s) 152, 852, 1151, 1322
SspI AATATT 1 cut(s) 517
SspMI CTAG 6 cut(s) 41, 116, 303, 351, 953, 1002
StuI AGGCCT 1 cut(s) 538
StyI CCWWGG 3 cut(s) 198, 476, 1142
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 1422
TaqI TCGA 9 cut(s) 57, 135, 189, 374, 493, 777, 1210, 1218, 1365
TaqII GACCGA 1 cut(s) 135
TasI AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
TatI WGTACW 1 cut(s) 594
TauI GCSGC 2 cut(s) 154, 1324
TfiI GAWTC 2 cut(s) 245, 1362
Tru1I TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
Tru9I TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
TscAI CASTG 2 cut(s) 1066, 1296
TseFI GTSAC 3 cut(s) 542, 1166, 1291
TseI GCWGC 3 cut(s) 416, 816, 1427
Tsp45I GTSAC 3 cut(s) 542, 1166, 1291
TspDTI ATGAA 5 cut(s) 338, 624, 674, 786, 812
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 1066, 1296
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 562, 989
XapI RAATTY 4 cut(s) 370, 568, 631, 727
XbaI TCTAGA 2 cut(s) 115, 302
XceI RCATGY 3 cut(s) 290, 492, 595
XhoI CTCGAG 2 cut(s) 56, 188
XmiI GTMKAC 1 cut(s) 949
XspI CTAG 6 cut(s) 41, 116, 303, 351, 953, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.