Rw0G015340

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00695
OG0003215
Physical Location & Seq
Reverse (-)
17910 .. 21558
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015340.1

Sequence Viewer

Length: 726 bp
ATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGGCTGGACTCGTGGGGCGAAGGGAAGGCAAAGTGGTGAGGACATGTGGCAATAATTGTAGTGTTTGTTTACAATATCTCAGATTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAATGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCAATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGTTGCCGGTACCTCCACCCGTCCCCGTTTTTTTTCAAAGGTAACCCTCTGTCACACTGTTTTTGTGGTCACCGTGATCCAAATATCAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

241

Amino Acids

26.86

Weight (kDa)

9.35

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 41 - 212 1.5e-49 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 639
AccBSI CCGCTC 1 cut(s) 445
AciI CCGC 4 cut(s) 182, 203, 339, 443
AclWI GGATC 1 cut(s) 701
AcsI RAATTY 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 617, 641
AflIII ACRYGT 2 cut(s) 77, 509
AgsI TTSAA 6 cut(s) 388, 396, 534, 571, 599, 667
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 4 cut(s) 133, 138, 200, 437
AluI AGCT 4 cut(s) 133, 138, 200, 437
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 701
AoxI GGCC 1 cut(s) 238
ApaI GGGCCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 437, 549
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp718I GGTACC 1 cut(s) 639
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 4 cut(s) 172, 238, 239, 583
AsuHPI GGTGA 3 cut(s) 82, 538, 692
AvaII GGWCC 2 cut(s) 172, 583
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 639
BanII GRGCYC 3 cut(s) 202, 225, 242
BarI GAAGNNNNNNTAC 2 cut(s) 514, 546
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 424, 561
BccI CCATC 1 cut(s) 498
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 463
BfmI CTRYAG 1 cut(s) 490
BisI GCNGC 4 cut(s) 340, 438, 443, 550
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 4 cut(s) 341, 439, 444, 551
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 172, 583
BmgT120I GGNCC 4 cut(s) 172, 238, 239, 583
BmiI GGNNCC 5 cut(s) 174, 240, 241, 584, 641
BmrFI CCNGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 33, 151, 497
Bse118I RCCGGY 1 cut(s) 636
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 33, 151, 497
BseGI GGATG 1 cut(s) 469
BseMII CTCAG 4 cut(s) 127, 148, 269, 441
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 2 cut(s) 424, 561
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 639
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 195, 637
BslFI GGGAC 2 cut(s) 158, 637
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 158, 637
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 240
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 3 cut(s) 202, 225, 242
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 1 cut(s) 706
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 4 cut(s) 182, 203, 339, 443
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 4 cut(s) 126, 147, 268, 442
BspLI GGNNCC 5 cut(s) 174, 240, 241, 584, 641
BspPI GGATC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 639
BsrBI CCGCTC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 615
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 3 cut(s) 33, 151, 497
BssMI GATC 1 cut(s) 706
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 3 cut(s) 418, 689, 704
BstACI GRCGYC 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 615
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 5 cut(s) 113, 134, 255, 450, 554
BstEII GGTNACC 2 cut(s) 671, 698
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 1 cut(s) 709
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 1 cut(s) 706
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 437
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 4 cut(s) 81, 311, 513, 616
BstPI GGTNACC 2 cut(s) 671, 698
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 424, 561
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 4 cut(s) 172, 238, 239, 583
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 616, 640
CviAII CATG 5 cut(s) 78, 308, 343, 510, 613
CviQI GTAC 2 cut(s) 616, 640
DdeI CTNAG 5 cut(s) 113, 134, 255, 450, 554
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
EciI GGCGGA 2 cut(s) 171, 192
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 3 cut(s) 202, 225, 242
Eco47I GGWCC 2 cut(s) 172, 583
Eco53kI GAGCTC 1 cut(s) 200
Eco91I GGTNACC 2 cut(s) 671, 698
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 3 cut(s) 238, 239, 583
EcoO65I GGTNACC 2 cut(s) 671, 698
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 3 cut(s) 202, 225, 242
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 5 cut(s) 81, 311, 346, 513, 616
FaiI YATR 8 cut(s) 79, 125, 309, 344, 492, 511, 524, 614
FaqI GGGAC 2 cut(s) 158, 637
FatI CATG 5 cut(s) 77, 307, 342, 509, 612
Fnu4HI GCNGC 4 cut(s) 340, 438, 443, 550
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 3 cut(s) 202, 225, 242
Fsp4HI GCNGC 4 cut(s) 340, 438, 443, 550
GlaI GCGC 1 cut(s) 441
GluI GCNGC 4 cut(s) 340, 438, 443, 550
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 195, 637
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 5 cut(s) 81, 311, 346, 513, 616
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HinfI GANTC 4 cut(s) 42, 117, 178, 266
HpaII CCGG 2 cut(s) 195, 637
HphI GGTGA 3 cut(s) 82, 538, 692
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 116, 265, 451
Hpy188III TCNNGA 3 cut(s) 175, 324, 388
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 194, 221
HpyAV CCTTC 5 cut(s) 48, 53, 340, 573, 605
HpyCH4III ACNGT 3 cut(s) 418, 689, 704
HpyCH4V TGCA 2 cut(s) 383, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 437
HpyF3I CTNAG 5 cut(s) 113, 134, 255, 450, 554
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 81, 311, 346, 513, 616
HspAI GCGC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 643
Kzo9I GATC 1 cut(s) 706
LmnI GCTCC 2 cut(s) 197, 205
LpnPI CCDG 8 cut(s) 3, 19, 24, 46, 208, 302, 425, 650
Lsp1109I GCAGC 2 cut(s) 424, 561
MaeIII GTNAC 5 cut(s) 526, 563, 671, 681, 698
MalI GATC 1 cut(s) 708
MbiI CCGCTC 1 cut(s) 445
MboI GATC 1 cut(s) 706
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 3 cut(s) 202, 225, 242
MluCI AATT 5 cut(s) 88, 282, 391, 517, 718
MlyI GAGTC 2 cut(s) 36, 172
MnlI CCTC 9 cut(s) 14, 17, 66, 146, 155, 224, 271, 653, 687
Mph1103I ATGCAT 1 cut(s) 385
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 2 cut(s) 195, 637
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 437
NdeII GATC 1 cut(s) 706
NlaIII CATG 5 cut(s) 81, 311, 346, 513, 616
NlaIV GGNNCC 5 cut(s) 174, 240, 241, 584, 641
NmuCI GTSAC 4 cut(s) 526, 563, 681, 698
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 4 cut(s) 81, 311, 513, 616
PciI ACATGT 2 cut(s) 77, 509
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 117, 266
PkrI GCNGC 4 cut(s) 341, 439, 444, 551
PleI GAGTC 2 cut(s) 36, 172
PpsI GAGTC 2 cut(s) 36, 172
PpuMI RGGWCCY 1 cut(s) 583
PscI ACATGT 2 cut(s) 77, 509
Psp124BI GAGCTC 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 32
PspEI GGTNACC 2 cut(s) 671, 698
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 5 cut(s) 174, 240, 241, 584, 641
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 4 cut(s) 172, 238, 239, 583
PspPPI RGGWCCY 1 cut(s) 583
RsaI GTAC 2 cut(s) 617, 641
RsaNI GTAC 2 cut(s) 616, 640
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 202
SatI GCNGC 4 cut(s) 340, 438, 443, 550
Sau3AI GATC 1 cut(s) 706
Sau96I GGNCC 4 cut(s) 172, 238, 239, 583
SchI GAGTC 2 cut(s) 36, 172
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 3 cut(s) 202, 225, 242
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 2 cut(s) 172, 583
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 5 cut(s) 88, 282, 391, 517, 718
SsiI CCGC 4 cut(s) 182, 203, 339, 443
SspI AATATT 1 cut(s) 538
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 418, 689, 704
TaqI TCGA 5 cut(s) 7, 147, 219, 514, 624
TaqII GACCGA 1 cut(s) 165
TasI AATT 5 cut(s) 88, 282, 391, 517, 718
TatI WGTACW 1 cut(s) 615
TauI GCSGC 2 cut(s) 342, 445
TfiI GAWTC 2 cut(s) 117, 266
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 4 cut(s) 526, 563, 681, 698
TseI GCWGC 2 cut(s) 437, 549
Tsp45I GTSAC 4 cut(s) 526, 563, 681, 698
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 172, 583
XapI RAATTY 1 cut(s) 391
XceI RCATGY 4 cut(s) 81, 311, 513, 616
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.