Rh6CG157300

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003215
Physical Location & Seq
Reverse (-)
20423504 .. 20441945
18442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG157300.1

Sequence Viewer

Length: 663 bp
ATGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTATTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAATGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCAATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGTTGCCGGTACCTCCACCCGTCCCCGTTTTTTTTCAAAGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

220

Amino Acids

24.97

Weight (kDa)

9.64

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 36 - 207 1.2e-49 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 624
AccB1I GGYRCC 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 430
AciI CCGC 5 cut(s) 49, 167, 188, 324, 428
AcsI RAATTY 2 cut(s) 93, 376
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 602, 626
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 7 cut(s) 55, 373, 381, 519, 556, 584, 652
AluBI AGCT 4 cut(s) 118, 123, 185, 422
AluI AGCT 4 cut(s) 118, 123, 185, 422
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 448
AoxI GGCC 1 cut(s) 223
ApaI GGGCCC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 422, 534
ApoI RAATTY 2 cut(s) 93, 376
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp718I GGTACC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 4 cut(s) 157, 223, 224, 568
AsuHPI GGTGA 2 cut(s) 22, 523
AvaII GGWCC 2 cut(s) 157, 568
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 3 cut(s) 187, 210, 227
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 409, 546
BccI CCATC 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 448
BfmI CTRYAG 1 cut(s) 475
BisI GCNGC 4 cut(s) 325, 423, 428, 535
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 4 cut(s) 326, 424, 429, 536
Bme18I GGWCC 2 cut(s) 157, 568
BmgT120I GGNCC 4 cut(s) 157, 223, 224, 568
BmiI GGNNCC 5 cut(s) 159, 225, 226, 569, 626
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 136, 482
Bse118I RCCGGY 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 136, 482
BseGI GGATG 1 cut(s) 454
BseMII CTCAG 3 cut(s) 133, 254, 426
BseNI ACTGG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 409, 546
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 180, 622
BslFI GGGAC 2 cut(s) 143, 622
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 143, 622
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 225
Bsp120I GGGCCC 1 cut(s) 223
Bsp1286I GDGCHC 3 cut(s) 187, 210, 227
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 1 cut(s) 85
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 5 cut(s) 49, 167, 188, 324, 428
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 3 cut(s) 132, 253, 427
BspLI GGNNCC 5 cut(s) 159, 225, 226, 569, 626
BspT107I GGYRCC 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 136, 482
BssMI GATC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 119, 240, 435, 539
BstF5I GGATG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 120, 293, 422
BstNSI RCATGY 3 cut(s) 296, 498, 601
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 409, 546
BstXI CCANNNNNNTGG 1 cut(s) 489
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 621
Cfr13I GGNCC 4 cut(s) 157, 223, 224, 568
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 601, 625
CviAII CATG 4 cut(s) 293, 328, 495, 598
CviQI GTAC 2 cut(s) 601, 625
DdeI CTNAG 4 cut(s) 119, 240, 435, 539
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EciI GGCGGA 2 cut(s) 156, 177
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 3 cut(s) 187, 210, 227
Eco47I GGWCC 2 cut(s) 157, 568
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoO109I RGGNCCY 3 cut(s) 223, 224, 568
EcoRI GAATTC 2 cut(s) 93, 376
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 3 cut(s) 187, 210, 227
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 4 cut(s) 296, 331, 498, 601
FaiI YATR 7 cut(s) 110, 294, 329, 477, 496, 509, 599
FaqI GGGAC 2 cut(s) 143, 622
FatI CATG 4 cut(s) 292, 327, 494, 597
Fnu4HI GCNGC 4 cut(s) 325, 423, 428, 535
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 3 cut(s) 187, 210, 227
Fsp4HI GCNGC 4 cut(s) 325, 423, 428, 535
GlaI GCGC 1 cut(s) 426
GluI GCNGC 4 cut(s) 325, 423, 428, 535
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 180, 622
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 296, 331, 498, 601
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 2 cut(s) 163, 251
HpaII CCGG 2 cut(s) 180, 622
HphI GGTGA 2 cut(s) 22, 523
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 250, 436
Hpy188III TCNNGA 3 cut(s) 160, 309, 373
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 2 cut(s) 179, 206
HpyAV CCTTC 4 cut(s) 28, 325, 558, 590
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 368, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 293, 422
HpyF3I CTNAG 4 cut(s) 119, 240, 435, 539
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 296, 331, 498, 601
HspAI GCGC 1 cut(s) 425
KpnI GGTACC 1 cut(s) 628
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 182, 190
LpnPI CCDG 6 cut(s) 52, 57, 193, 287, 410, 635
Lsp1109I GCAGC 2 cut(s) 409, 546
MaeIII GTNAC 2 cut(s) 511, 548
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 430
MboI GATC 1 cut(s) 85
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 3 cut(s) 187, 210, 227
MluCI AATT 4 cut(s) 93, 267, 376, 502
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 6 cut(s) 6, 131, 140, 209, 256, 638
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 2 cut(s) 180, 622
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 120, 293, 422
NdeII GATC 1 cut(s) 85
NlaIII CATG 4 cut(s) 296, 331, 498, 601
NlaIV GGNNCC 5 cut(s) 159, 225, 226, 569, 626
NmuCI GTSAC 2 cut(s) 511, 548
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 3 cut(s) 296, 498, 601
PciI ACATGT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 4 cut(s) 326, 424, 429, 536
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 568
PscI ACATGT 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 568
PspN4I GGNNCC 5 cut(s) 159, 225, 226, 569, 626
PspOMI GGGCCC 1 cut(s) 223
PspPI GGNCC 4 cut(s) 157, 223, 224, 568
PspPPI RGGWCCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 602, 626
RsaNI GTAC 2 cut(s) 601, 625
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 4 cut(s) 325, 423, 428, 535
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 4 cut(s) 157, 223, 224, 568
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 3 cut(s) 187, 210, 227
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 157, 568
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 4 cut(s) 93, 267, 376, 502
SsiI CCGC 5 cut(s) 49, 167, 188, 324, 428
SspI AATATT 1 cut(s) 523
SstI GAGCTC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 4 cut(s) 132, 204, 499, 609
TaqII GACCGA 1 cut(s) 150
TasI AATT 4 cut(s) 93, 267, 376, 502
TatI WGTACW 1 cut(s) 600
TauI GCSGC 2 cut(s) 327, 430
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 2 cut(s) 511, 548
TseI GCWGC 2 cut(s) 422, 534
Tsp45I GTSAC 2 cut(s) 511, 548
TspDTI ATGAA 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 157, 568
XapI RAATTY 2 cut(s) 93, 376
XceI RCATGY 3 cut(s) 296, 498, 601
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.