Rw6G040830

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003215
Physical Location & Seq
Forward (+)
64610771 .. 64613198
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040830.1

Sequence Viewer

Length: 681 bp
ATGCTTCGAGGCGTGGCTGGAGGAGGTGCGACCTGGGCTGGACTCGTGGGGCGAAGGGAAGGCAAAGTGGTGAGGACATGTGGCAATAATTGTAGTGTTTGTTTACAATATCTCAGATTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCTAACGACGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCGATAAGAGAAAGGGCCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAATGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCAATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGGCCCTTGCAGACTGTAATGGGAGTTGCCAAAGCTGCGCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGGTATGGTATTTTTCTAAAATTGATATGTCTTTGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

226

Amino Acids

25.07

Weight (kDa)

9.1

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 41 - 216 5.9e-50 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 182, 203, 339
AcsI RAATTY 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 626
AflIII ACRYGT 2 cut(s) 77, 518
AgsI TTSAA 5 cut(s) 388, 396, 543, 580, 608
AjnI CCWGG 2 cut(s) 32, 411
AluBI AGCT 4 cut(s) 133, 138, 200, 447
AluI AGCT 4 cut(s) 133, 138, 200, 447
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 472
AoxI GGCC 2 cut(s) 238, 414
ApaI GGGCCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 447, 558
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspLEI GCGC 2 cut(s) 452, 454
AspS9I GGNCC 5 cut(s) 172, 238, 239, 415, 592
AsuHPI GGTGA 2 cut(s) 82, 547
AvaII GGWCC 2 cut(s) 172, 592
BaeGI GKGCMC 1 cut(s) 242
BanII GRGCYC 3 cut(s) 202, 225, 242
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 434, 570
BccI CCATC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 34, 413
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 499
BisI GCNGC 3 cut(s) 340, 448, 559
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 3 cut(s) 341, 449, 560
Bme1390I CCNGG 2 cut(s) 34, 413
Bme18I GGWCC 2 cut(s) 172, 592
BmgT120I GGNCC 5 cut(s) 172, 238, 239, 415, 592
BmiI GGNNCC 4 cut(s) 174, 240, 241, 593
BmrFI CCNGG 2 cut(s) 34, 413
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 33, 151, 506
BseBI CCWGG 2 cut(s) 34, 413
BseDI CCNNGG 3 cut(s) 33, 151, 506
BseGI GGATG 1 cut(s) 478
BseMII CTCAG 4 cut(s) 127, 148, 269, 450
BsePI GCGCGC 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 2 cut(s) 434, 570
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 240, 416
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 2 cut(s) 240, 416
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 3 cut(s) 202, 225, 242
Bsp1407I TGTACA 1 cut(s) 624
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 3 cut(s) 182, 203, 339
BspANI GGCC 2 cut(s) 240, 416
BspCNI CTCAG 4 cut(s) 126, 147, 268, 451
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 4 cut(s) 174, 240, 241, 593
BsrGI TGTACA 1 cut(s) 624
BssECI CCNNGG 3 cut(s) 33, 151, 506
BssHII GCGCGC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 506
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 2 cut(s) 34, 413
Bst4CI ACNGT 1 cut(s) 428
BstACI GRCGYC 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 131, 452
BstDEI CTNAG 5 cut(s) 113, 134, 255, 459, 563
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 2 cut(s) 452, 454
BstMAI GTCTC 1 cut(s) 472
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 447
BstNI CCWGG 2 cut(s) 34, 413
BstNSI RCATGY 4 cut(s) 81, 311, 522, 625
BstSCI CCNGG 2 cut(s) 32, 411
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 434, 570
BstXI CCANNNNNNTGG 1 cut(s) 513
BsuRI GGCC 2 cut(s) 240, 416
BtsCI GGATG 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 131, 452
CfoI GCGC 2 cut(s) 452, 454
Cfr13I GGNCC 5 cut(s) 172, 238, 239, 415, 592
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 625
CviAII CATG 5 cut(s) 78, 308, 343, 519, 622
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 5 cut(s) 113, 134, 255, 459, 563
EciI GGCGGA 2 cut(s) 171, 192
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 506
Eco24I GRGCYC 3 cut(s) 202, 225, 242
Eco47I GGWCC 2 cut(s) 172, 592
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 4 cut(s) 238, 239, 415, 592
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 32, 411
EcoT14I CCWWGG 1 cut(s) 506
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 3 cut(s) 202, 225, 242
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 5 cut(s) 81, 311, 346, 522, 625
FaqI GGGAC 1 cut(s) 158
FatI CATG 5 cut(s) 77, 307, 342, 518, 621
Fnu4HI GCNGC 3 cut(s) 340, 448, 559
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 3 cut(s) 202, 225, 242
Fsp4HI GCNGC 3 cut(s) 340, 448, 559
GlaI GCGC 2 cut(s) 451, 453
GluI GCNGC 3 cut(s) 340, 448, 559
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 240, 416
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 200
HhaI GCGC 2 cut(s) 452, 454
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 5 cut(s) 81, 311, 346, 522, 625
Hin6I GCGC 2 cut(s) 450, 452
HinP1I GCGC 2 cut(s) 450, 452
HinfI GANTC 4 cut(s) 42, 117, 178, 266
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 82, 547
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 116, 265, 460
Hpy188III TCNNGA 3 cut(s) 175, 324, 388
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 194, 221
HpyAV CCTTC 5 cut(s) 48, 53, 340, 582, 614
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 383, 422, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 447
HpyF3I CTNAG 5 cut(s) 113, 134, 255, 459, 563
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 81, 311, 346, 522, 625
HspAI GCGC 2 cut(s) 450, 452
LmnI GCTCC 2 cut(s) 197, 205
LpnPI CCDG 8 cut(s) 3, 19, 24, 46, 208, 302, 398, 425
Lsp1109I GCAGC 2 cut(s) 434, 570
MaeIII GTNAC 2 cut(s) 535, 572
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 3 cut(s) 202, 225, 242
MluCI AATT 5 cut(s) 88, 282, 391, 526, 659
MlyI GAGTC 2 cut(s) 36, 172
MnlI CCTC 7 cut(s) 14, 17, 66, 146, 155, 224, 271
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 34, 413
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 2 cut(s) 34, 413
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 35, 135, 308, 447
NlaIII CATG 5 cut(s) 81, 311, 346, 522, 625
NlaIV GGNNCC 4 cut(s) 174, 240, 241, 593
NmuCI GTSAC 2 cut(s) 535, 572
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 4 cut(s) 81, 311, 522, 625
PauI GCGCGC 1 cut(s) 450
PciI ACATGT 2 cut(s) 77, 518
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 117, 266
PkrI GCNGC 3 cut(s) 341, 449, 560
PleI GAGTC 2 cut(s) 36, 172
PpsI GAGTC 2 cut(s) 36, 172
PpuMI RGGWCCY 1 cut(s) 592
PscI ACATGT 2 cut(s) 77, 518
Psp124BI GAGCTC 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 32, 411
PspGI CCWGG 2 cut(s) 32, 411
PspN4I GGNNCC 4 cut(s) 174, 240, 241, 593
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 5 cut(s) 172, 238, 239, 415, 592
PspPPI RGGWCCY 1 cut(s) 592
PteI GCGCGC 1 cut(s) 450
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 3 cut(s) 340, 448, 559
Sau96I GGNCC 5 cut(s) 172, 238, 239, 415, 592
SchI GAGTC 2 cut(s) 36, 172
ScrFI CCNGG 2 cut(s) 34, 413
SduI GDGCHC 3 cut(s) 202, 225, 242
SfcI CTRYAG 1 cut(s) 499
SinI GGWCC 2 cut(s) 172, 592
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 5 cut(s) 88, 282, 391, 526, 659
SsiI CCGC 3 cut(s) 182, 203, 339
SspI AATATT 1 cut(s) 547
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 32, 411
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 5 cut(s) 7, 147, 219, 523, 633
TaqII GACCGA 1 cut(s) 165
TasI AATT 5 cut(s) 88, 282, 391, 526, 659
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 2 cut(s) 117, 266
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TseFI GTSAC 2 cut(s) 535, 572
TseI GCWGC 2 cut(s) 447, 558
Tsp45I GTSAC 2 cut(s) 535, 572
TspDTI ATGAA 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 172, 592
XapI RAATTY 1 cut(s) 391
XceI RCATGY 4 cut(s) 81, 311, 522, 625
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.