Rh7BG407700

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003215
Physical Location & Seq
Reverse (-)
45686916 .. 45696304
9389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG407700.1

Sequence Viewer

Length: 1113 bp
ATGGTGAAAGCGGTGATCGGAGAGGAAACCCAGCTCAAACTAGCCGAGGCTCGCCTCGAGCAATCCTCTTCTACCCCCGCCCAGGTGGGGCTCGTCATAGGCAAGCTCAGCTCTACCCTCGACCGAGGCTTCGTCTTTGATTTGGTCCCGACTCCGCCCAACGACGCCGGAGCTCCGCCTTGTTCCCTGGTCGAGCCCGACAAGAGAAAGGGGCCCAAGCCCAAATCTCAGTCCTCTGATTCCCACTCTCTCTCAATTGACAAGGATTGGGTCGCCGAACATGCTCGTCAGGTGTCAAGAATGTTGGTGGGTGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGGTTACCTATATCTCACAAGAATTCATCAAATGTTCAGACTATGAGTGAAGCTCTTCGTCATGAAATTTCAGTTCATGCTAAATATTTAAAAAGTGCAAAAGCCATGCTGGATGGAAATTTGGTTGTACACAATGATCTATCCACATCAGATGGTTTGCATGAAGTAGAATTGCTGTTACCATTTGTGGAAGATACTGAAGTATGCAGCCAAAAAGATGCTCTTGGTGTTCTTGCTTTTAGAGGTTCTGTTTGTTCCTTTGCATACTTAAATATTCGAGAACCAATTTCACAAGCTGTTGCTGATATAAAGGATGATATTATCACAAGTCTGCAAAGTAGACTAGATATCATCTGTGATGAGGCAGATGGAGAGACAGGTCCAATTGACACTGGCATCGAGAAAGCAAGAGATGATGCTGATAGCCAGGAAGTAGGAGATGGGATATCCAGTGGGACACCCGTATCCCAAATTGTACTTCAATCATTAAGGTTTGTTATGCTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

370

Amino Acids

40.58

Weight (kDa)

5.56

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 30 - 328 5.2e-84 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 943
AciI CCGC 5 cut(s) 11, 78, 155, 176, 416
AcsI RAATTY 4 cut(s) 364, 625, 669, 721
AcuI CTGAAG 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 590, 732, 1080
AfiI CCNNNNNNNGG 2 cut(s) 82, 87
AflIII ACRYGT 1 cut(s) 482
AgsI TTSAA 6 cut(s) 361, 369, 507, 544, 572, 1085
AjnI CCWGG 3 cut(s) 81, 186, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AluBI AGCT 7 cut(s) 34, 106, 111, 173, 410, 656, 899
AluI AGCT 7 cut(s) 34, 106, 111, 173, 410, 656, 899
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 2 cut(s) 436, 971
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 212
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 410, 522, 810
ApoI RAATTY 4 cut(s) 364, 625, 669, 721
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 5 cut(s) 145, 212, 213, 556, 983
AsuHPI GGTGA 3 cut(s) 16, 25, 511
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 3 cut(s) 145, 556, 983
BaeGI GKGCMC 1 cut(s) 216
BaeI ACNNNNGTAYC 4 cut(s) 789, 822, 1050, 1083
BanII GRGCYC 4 cut(s) 93, 175, 198, 216
BarI GAAGNNNNNNTAC 2 cut(s) 487, 519
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 397, 534, 822
BccI CCATC 5 cut(s) 471, 710, 749, 965, 1037
BciT130I CCWGG 3 cut(s) 83, 188, 1031
BciVI GTATCC 1 cut(s) 1078
BcoDI GTCTC 2 cut(s) 436, 971
BfaI CTAG 2 cut(s) 41, 947
BfmI CTRYAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 1078
BisI GCNGC 4 cut(s) 411, 416, 523, 811
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 4 cut(s) 412, 417, 524, 812
Bme1390I CCNGG 3 cut(s) 83, 188, 1031
Bme18I GGWCC 3 cut(s) 145, 556, 983
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 5 cut(s) 145, 212, 213, 556, 983
BmiI GGNNCC 4 cut(s) 147, 213, 214, 557
BmrFI CCNGG 3 cut(s) 83, 188, 1031
BmsI GCATC 3 cut(s) 811, 1008, 1009
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 640, 672
Bpu1102I GCTNAGC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 5 cut(s) 45, 81, 124, 186, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 87
Bse1I ACTGG 2 cut(s) 1000, 1053
BseBI CCWGG 3 cut(s) 83, 188, 1031
BseDI CCNNGG 5 cut(s) 45, 81, 124, 186, 470
BseGI GGATG 3 cut(s) 442, 721, 922
BseLI CCNNNNNNNGG 2 cut(s) 82, 87
BseMII CTCAG 3 cut(s) 121, 242, 414
BseNI ACTGG 2 cut(s) 1000, 1053
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 3 cut(s) 397, 534, 822
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 131, 1072
BslI CCNNNNNNNGG 2 cut(s) 82, 87
BsmAI GTCTC 2 cut(s) 436, 971
BsmFI GGGAC 2 cut(s) 131, 1072
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 4 cut(s) 93, 175, 198, 216
Bsp1407I TGTACA 2 cut(s) 588, 730
Bsp143I GATC 2 cut(s) 15, 739
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 5 cut(s) 11, 78, 155, 176, 416
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 3 cut(s) 120, 241, 415
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 4 cut(s) 147, 213, 214, 557
BspQI GCTCTTC 1 cut(s) 663
BsrBI CCGCTC 1 cut(s) 418
BsrGI TGTACA 2 cut(s) 588, 730
BsrI ACTGG 2 cut(s) 1000, 1053
BssECI CCNNGG 5 cut(s) 45, 81, 124, 186, 470
BssMI GATC 2 cut(s) 15, 739
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 470
Bst2UI CCWGG 3 cut(s) 83, 188, 1031
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 73, 663
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 2 cut(s) 588, 730
BstC8I GCNNGC 2 cut(s) 52, 104
BstDEI CTNAG 4 cut(s) 107, 228, 423, 527
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 3 cut(s) 442, 721, 922
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 18, 742
BstMAI GTCTC 2 cut(s) 436, 971
BstMBI GATC 2 cut(s) 15, 739
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 108, 281, 410
BstNI CCWGG 3 cut(s) 83, 188, 1031
BstNSI RCATGY 3 cut(s) 284, 486, 589
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 81, 186, 1029
BstSFI CTRYAG 1 cut(s) 463
BstSLI GKGCMC 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 397, 534, 822
BstXI CCANNNNNNTGG 1 cut(s) 477
BsuI GTATCC 1 cut(s) 1078
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 442, 721, 922
BtsIMutI CAGTG 2 cut(s) 993, 1060
Cac8I GCNNGC 2 cut(s) 52, 104
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 5 cut(s) 145, 212, 213, 556, 983
CseI GACGC 1 cut(s) 173
Csp6I GTAC 3 cut(s) 589, 731, 1079
CviAII CATG 8 cut(s) 281, 316, 483, 586, 665, 680, 709, 764
CviQI GTAC 3 cut(s) 589, 731, 1079
DdeI CTNAG 4 cut(s) 107, 228, 423, 527
DpnI GATC 2 cut(s) 17, 741
DpnII GATC 2 cut(s) 15, 739
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 73, 663
EarI CTCTTC 2 cut(s) 73, 663
EciI GGCGGA 2 cut(s) 144, 165
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 470
Eco24I GRGCYC 4 cut(s) 93, 175, 198, 216
Eco32I GATATC 2 cut(s) 952, 1050
Eco47I GGWCC 3 cut(s) 145, 556, 983
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 606
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 2 cut(s) 212, 556
EcoO65I GGTNACC 1 cut(s) 606
EcoRI GAATTC 2 cut(s) 364, 625
EcoRII CCWGG 3 cut(s) 81, 186, 1029
EcoRV GATATC 2 cut(s) 952, 1050
EcoT14I CCWWGG 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 4 cut(s) 93, 175, 198, 216
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 8 cut(s) 284, 319, 486, 589, 668, 683, 712, 767
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 2 cut(s) 131, 1072
FatI CATG 8 cut(s) 280, 315, 482, 585, 664, 679, 708, 763
FauI CCCGC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 943
Fnu4HI GCNGC 4 cut(s) 411, 416, 523, 811
FokI GGATG 3 cut(s) 449, 728, 929
FriOI GRGCYC 4 cut(s) 93, 175, 198, 216
Fsp4HI GCNGC 4 cut(s) 411, 416, 523, 811
FspBI CTAG 2 cut(s) 41, 947
GlaI GCGC 1 cut(s) 414
GluI GCNGC 4 cut(s) 411, 416, 523, 811
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 8 cut(s) 284, 319, 486, 589, 668, 683, 712, 767
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 2 cut(s) 151, 239
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 16, 25, 511
Hpy166II GTNNAC 2 cut(s) 733, 944
Hpy188I TCNGA 5 cut(s) 20, 238, 424, 642, 754
Hpy188III TCNNGA 6 cut(s) 148, 297, 361, 665, 881, 1003
Hpy8I GTNNAC 2 cut(s) 733, 944
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 313, 546, 578
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 7 cut(s) 356, 585, 701, 763, 810, 866, 937
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 281, 410
HpyF3I CTNAG 4 cut(s) 107, 228, 423, 527
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 8 cut(s) 284, 319, 486, 589, 668, 683, 712, 767
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 15, 739
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 2 cut(s) 170, 178
Lsp1109I GCAGC 3 cut(s) 397, 534, 822
LweI GCATC 3 cut(s) 811, 1008, 1009
MaeI CTAG 2 cut(s) 41, 947
MaeIII GTNAC 4 cut(s) 499, 536, 606, 780
MalI GATC 2 cut(s) 17, 741
MbiI CCGCTC 1 cut(s) 418
MboI GATC 2 cut(s) 15, 739
MboII GAAGA 3 cut(s) 60, 650, 806
MfeI CAATTG 2 cut(s) 255, 987
MhlI GDGCHC 4 cut(s) 93, 175, 198, 216
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 9 cut(s) 16, 40, 65, 76, 119, 128, 244, 839, 958
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 4 cut(s) 692, 872, 1091, 1111
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 3 cut(s) 83, 188, 1031
MunI CAATTG 2 cut(s) 255, 987
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 3 cut(s) 83, 188, 1031
MwoI GCNNNNNNNGC 3 cut(s) 108, 281, 410
NdeII GATC 2 cut(s) 15, 739
NlaIII CATG 8 cut(s) 284, 319, 486, 589, 668, 683, 712, 767
NlaIV GGNNCC 4 cut(s) 147, 213, 214, 557
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 499, 536
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 3 cut(s) 284, 486, 589
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 664
PciI ACATGT 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 663
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 4 cut(s) 412, 417, 524, 812
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 81, 186, 1029
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 3 cut(s) 81, 186, 1029
PspN4I GGNNCC 4 cut(s) 147, 213, 214, 557
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 5 cut(s) 145, 212, 213, 556, 983
PspPPI RGGWCCY 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 56
RsaI GTAC 3 cut(s) 590, 732, 1080
RsaNI GTAC 3 cut(s) 589, 731, 1079
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 4 cut(s) 692, 872, 1091, 1111
SatI GCNGC 4 cut(s) 411, 416, 523, 811
Sau3AI GATC 2 cut(s) 15, 739
Sau96I GGNCC 5 cut(s) 145, 212, 213, 556, 983
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 83, 188, 1031
SduI GDGCHC 4 cut(s) 93, 175, 198, 216
SfaNI GCATC 3 cut(s) 811, 1008, 1009
SfcI CTRYAG 1 cut(s) 463
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 3 cut(s) 145, 556, 983
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 5 cut(s) 11, 78, 155, 176, 416
SspI AATATT 3 cut(s) 511, 689, 877
SspMI CTAG 2 cut(s) 41, 947
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 3 cut(s) 81, 186, 1029
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 7 cut(s) 57, 120, 192, 487, 597, 880, 1002
TaqII GACCGA 1 cut(s) 138
TatI WGTACW 3 cut(s) 588, 730, 1078
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 4 cut(s) 692, 872, 1091, 1111
Tru9I TTAA 4 cut(s) 692, 872, 1091, 1111
TscAI CASTG 2 cut(s) 1000, 1060
TseFI GTSAC 2 cut(s) 499, 536
TseI GCWGC 3 cut(s) 410, 522, 810
Tsp45I GTSAC 2 cut(s) 499, 536
TspDTI ATGAA 5 cut(s) 332, 618, 668, 681, 780
TspRI CASTG 2 cut(s) 1000, 1060
VpaK11BI GGWCC 3 cut(s) 145, 556, 983
XapI RAATTY 4 cut(s) 364, 625, 669, 721
XceI RCATGY 3 cut(s) 284, 486, 589
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 943
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 2 cut(s) 41, 947
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.