pycom15g35320

Protein odr-4 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
35247358 .. 35254077
6720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g35320.3

Sequence Viewer

Length: 1494 bp
ATGGTGAAAGCCGTCGTCGGCGAGGAAACCCAGCTCAAACTAGCCGAGGATCGCCTCGAGAAATCCTCCACCCCCGTGCAGGTGGGGCTCCTCATAGGCAAGCTCAGCTCCTCTCTAGACCGAGGCTTCGTCTTCGATTTGATCCCAACGCCGCCGAACGACGCCGGAGCGCCTGCTTGCTCCGTCCTCGAGCCTGCCAAGGACGACAAGAGAAAGGGGCCTAAACCCAAATCTCAGCTCTCCGATTCCTTCTCTCTCTCCATTGACAAGGACTGGGTCGCTGAACATGCCCGTCAGGTGTCTAGAATGTTAGTGGGTGGCATGAAAGTAGTTGGCATATACATTTGGGCTAGTGATAGTGCTTTTAAGAATTCGAACATCATGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCAGCGCCCCTCTCAGAGATTGATTGGGATGAGAGACTGCTTATTCACATTTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTGTCCAGTAGCTTCAAATATTACGTCAAGCAGCCTAAGACCTTGTGACTTCAAAATGGGAAGGGTCCTAAATTCCCTTCAACATTTTAGGTGCATGTACAACTTTGATATCAGATTGCCCATATTTCACAAGAATTCATCAAATCTCCGAACTTTTAGTGAAGCCCTTCGTCATGGTATTTCAGTTCATGCAAAAGATTTAAGAAGTGCAAAAGCCATGTTTGATGGAAATTTGGTTGTTAACGATGATCTATGCACATCGGATGGTCTGCATGAAGTCGAGTTGCTTCTACCATTTATGAAAGATACTGAAGCTTGCAGCCAGAAAGATACTGTTGGTGTTGTTGATTTTAGCGGTTGTGTGTGTTCCTTTGCATTTTTAAATCCCAAAGAACCAATTTCACAAGCTGTTGCTGATATTAAGGATGACATAATCACGAGTCTGCAGAGTAGACTAGATATCATCTGTGATGAGGCAGATGGCGAGGCGGGTCCAACTGAAACCAGTGGCCAGCAATCAAGAGATGGTGCTGATACTCAGGAACCAAGAGATGGGATATCCAGTGAAACACCTGTTTCTCAAATTGTTCTTCAATCATTCAGACAATCATGCAATCTTTCACTTCCCCGAAGAGTCTTTGTTCCTTGGTTAGCGGGTACATTTGTGTGTGACTACCTACAGCCATCTGAGACGTTTGAGGTTCTGAAAGATCGATGTGTCGAGTTGTTGTCTATGGAAGCTCCAGCAGATGACTCAACAATCTTGGAACCAGAAATAGACGCCCCATCTGCAGTGACCAAATCCTTCTGGGATGTGGTGGTGCCGCTTCCCTCGGCATCTAACTCCTGTTTGGAGAAGAGTGGAATCGAAAAATTAAGGGGAGAAAGTAGCCGAAAATCTACAGAGTTCTCTAATGTCAACATCATGGCTGCTGGTATATTCCTTCTTCTCTCTATCATTATAGGATACATTCTCATATTCGTAAGGAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

54.68

Weight (kDa)

5.24

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 1318
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 949
AciI CCGC 5 cut(s) 152, 852, 986, 1151, 1322
AclWI GGATC 2 cut(s) 57, 136
AcoI YGGCCR 1 cut(s) 1006
AcsI RAATTY 4 cut(s) 370, 568, 631, 727
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 2 cut(s) 162, 1278
AfaI GTAC 2 cut(s) 596, 1156
AfiI CCNNNNNNNGG 2 cut(s) 79, 1049
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 4 cut(s) 513, 550, 578, 1091
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 8 cut(s) 34, 103, 108, 238, 509, 812, 905, 1238
AluI AGCT 8 cut(s) 34, 103, 108, 238, 509, 812, 905, 1238
Alw26I GTCTC 2 cut(s) 442, 1181
AlwI GGATC 2 cut(s) 57, 136
Ama87I CYCGRG 2 cut(s) 56, 188
AoxI GGCC 2 cut(s) 218, 1006
ApeKI GCWGC 4 cut(s) 416, 528, 816, 1427
ApoI RAATTY 4 cut(s) 370, 568, 631, 727
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 506, 538
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 2 cut(s) 172, 421
AspS9I GGNCC 3 cut(s) 218, 562, 989
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 2 cut(s) 56, 188
AvaII GGWCC 2 cut(s) 562, 989
BaeI ACNNNNGTAYC 2 cut(s) 1146, 1179
BalI TGGCCA 1 cut(s) 1008
BanI GGYRCC 1 cut(s) 1318
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 428, 540, 828, 1414
BccI CCATC 7 cut(s) 716, 755, 971, 1016, 1043, 1189, 1291
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciVI GTATCC 1 cut(s) 1457
BcoDI GTCTC 2 cut(s) 442, 1181
BfaI CTAG 5 cut(s) 41, 116, 303, 351, 953
BfmI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
BfoI RGCGCY 2 cut(s) 173, 422
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 1457
BisI GCNGC 6 cut(s) 152, 417, 529, 817, 1322, 1428
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 6 cut(s) 153, 418, 530, 818, 1323, 1429
Bme18I GGWCC 2 cut(s) 562, 989
BmeT110I CYCGRG 2 cut(s) 56, 188
BmgT120I GGNCC 3 cut(s) 218, 562, 989
BmiI GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 1343
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 1224
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 1210
BsaHI GRCGYC 2 cut(s) 162, 1278
BsaJI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 1049
Bse1I ACTGG 4 cut(s) 278, 503, 1002, 1059
BseCI ATCGAT 1 cut(s) 1210
BseDI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
BseGI GGATG 4 cut(s) 448, 766, 928, 1315
BseLI CCNNNNNNNGG 2 cut(s) 79, 1049
BseMII CTCAG 5 cut(s) 118, 248, 441, 1049, 1176
BseNI ACTGG 4 cut(s) 278, 503, 1002, 1059
BseRI GAGGAG 2 cut(s) 80, 100
BseXI GCAGC 4 cut(s) 428, 540, 828, 1414
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 2 cut(s) 220, 1008
BshNI GGYRCC 1 cut(s) 1318
BshVI ATCGAT 1 cut(s) 1210
BsiHKCI CYCGRG 2 cut(s) 56, 188
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 79, 1049
BsmAI GTCTC 2 cut(s) 442, 1181
BsmBI CGTCTC 1 cut(s) 1181
BsnI GGCC 2 cut(s) 220, 1008
BsoBI CYCGRG 2 cut(s) 56, 188
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 5 cut(s) 49, 141, 745, 1207, 1487
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 5 cut(s) 152, 852, 986, 1151, 1322
BspANI GGCC 2 cut(s) 220, 1008
BspCNI CTCAG 5 cut(s) 117, 247, 440, 1048, 1177
BspDI ATCGAT 1 cut(s) 1210
BspLI GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
BspMAI CTGCAG 2 cut(s) 945, 1291
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 57, 136
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1318
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 4 cut(s) 278, 503, 1002, 1059
BssECI CCNNGG 6 cut(s) 45, 121, 198, 476, 1142, 1329
BssMI GATC 5 cut(s) 49, 141, 745, 1207, 1487
BssNI GRCGYC 2 cut(s) 162, 1278
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 3 cut(s) 198, 476, 1142
Bst2BI CACGAG 1 cut(s) 934
Bst4CI ACNGT 2 cut(s) 397, 832
Bst6I CTCTTC 2 cut(s) 1123, 1349
BstACI GRCGYC 2 cut(s) 162, 1278
BstAUI TGTACA 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 6 cut(s) 101, 174, 178, 195, 814, 1010
BstDEI CTNAG 6 cut(s) 104, 234, 427, 533, 1035, 1185
BstF5I GGATG 4 cut(s) 448, 766, 928, 1315
BstH2I RGCGCY 2 cut(s) 173, 422
BstHHI GCGC 2 cut(s) 172, 421
BstKTI GATC 5 cut(s) 52, 144, 748, 1210, 1490
BstMAI GTCTC 2 cut(s) 442, 1181
BstMBI GATC 5 cut(s) 49, 141, 745, 1207, 1487
BstMWI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
BstNSI RCATGY 3 cut(s) 290, 492, 595
BstSFI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
BstV1I GCAGC 4 cut(s) 428, 540, 828, 1414
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 1210
BsuI GTATCC 1 cut(s) 1457
BsuRI GGCC 2 cut(s) 220, 1008
BsuTUI ATCGAT 1 cut(s) 1210
BtsCI GGATG 4 cut(s) 448, 766, 928, 1315
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 3 cut(s) 1009, 1066, 1296
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 6 cut(s) 101, 174, 178, 195, 814, 1010
CfoI GCGC 2 cut(s) 172, 421
Cfr13I GGNCC 3 cut(s) 218, 562, 989
ClaI ATCGAT 1 cut(s) 1210
CseI GACGC 2 cut(s) 170, 1286
Csp6I GTAC 2 cut(s) 595, 1155
CviQI GTAC 2 cut(s) 595, 1155
DdeI CTNAG 6 cut(s) 104, 234, 427, 533, 1035, 1185
DpnI GATC 5 cut(s) 51, 143, 747, 1209, 1489
DpnII GATC 5 cut(s) 49, 141, 745, 1207, 1487
DraI TTTAAA 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 1006
Eam1104I CTCTTC 2 cut(s) 1123, 1349
EarI CTCTTC 2 cut(s) 1123, 1349
Eco130I CCWWGG 3 cut(s) 198, 476, 1142
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 3 cut(s) 607, 958, 1056
Eco47I GGWCC 2 cut(s) 562, 989
Eco57I CTGAAG 1 cut(s) 828
Eco88I CYCGRG 2 cut(s) 56, 188
EcoO109I RGGNCCY 2 cut(s) 218, 562
EcoRI GAATTC 2 cut(s) 370, 631
EcoRV GATATC 3 cut(s) 607, 958, 1056
EcoT14I CCWWGG 3 cut(s) 198, 476, 1142
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 198, 476, 1142
Esp3I CGTCTC 1 cut(s) 1181
FauI CCCGC 2 cut(s) 979, 1144
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 6 cut(s) 152, 417, 529, 817, 1322, 1428
FokI GGATG 4 cut(s) 455, 773, 935, 1322
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 6 cut(s) 152, 417, 529, 817, 1322, 1428
FspBI CTAG 5 cut(s) 41, 116, 303, 351, 953
GlaI GCGC 2 cut(s) 171, 420
GluI GCNGC 6 cut(s) 152, 417, 529, 817, 1322, 1428
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 1224
HaeII RGCGCY 2 cut(s) 173, 422
HaeIII GGCC 2 cut(s) 220, 1008
HapII CCGG 1 cut(s) 165
HgaI GACGC 2 cut(s) 170, 1286
HhaI GCGC 2 cut(s) 172, 421
Hin1I GRCGYC 2 cut(s) 162, 1278
Hin6I GCGC 2 cut(s) 170, 419
HinP1I GCGC 2 cut(s) 170, 419
HincII GTYRAC 2 cut(s) 739, 1417
HindII GTYRAC 2 cut(s) 739, 1417
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 5 cut(s) 245, 937, 1131, 1250, 1362
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 486, 739, 950, 1417
Hpy188I TCNGA 8 cut(s) 244, 430, 611, 647, 760, 1100, 1186, 1203
Hpy188III TCNNGA 6 cut(s) 58, 116, 303, 934, 1017, 1037
Hpy8I GTNNAC 4 cut(s) 486, 739, 950, 1417
Hpy99I CGWCG 3 cut(s) 17, 20, 164
HpyAV CCTTC 6 cut(s) 259, 552, 584, 674, 1312, 1451
HpyCH4III ACNGT 2 cut(s) 397, 832
HpyCH4IV ACGT 2 cut(s) 521, 1190
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
HpyF3I CTNAG 6 cut(s) 104, 234, 427, 533, 1035, 1185
HpySE526I ACGT 2 cut(s) 521, 1190
Hsp92I GRCGYC 2 cut(s) 162, 1278
HspAI GCGC 2 cut(s) 170, 419
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 5 cut(s) 49, 141, 745, 1207, 1487
LmnI GCTCC 5 cut(s) 93, 113, 167, 185, 1243
Lsp1109I GCAGC 4 cut(s) 428, 540, 828, 1414
LweI GCATC 1 cut(s) 1343
MaeI CTAG 5 cut(s) 41, 116, 303, 351, 953
MaeII ACGT 2 cut(s) 521, 1190
MaeIII GTNAC 3 cut(s) 542, 1166, 1291
MalI GATC 5 cut(s) 51, 143, 747, 1209, 1489
MboI GATC 5 cut(s) 49, 141, 745, 1207, 1487
MboII GAAGA 5 cut(s) 124, 1079, 1140, 1366, 1436
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 1008
MluCI AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
MluNI TGGCCA 1 cut(s) 1008
MlyI GAGTC 3 cut(s) 946, 1140, 1244
MmeI TCCRAC 1 cut(s) 1016
Mox20I TGGCCA 1 cut(s) 1008
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 1008
MseI TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
MslI CAYNNNNRTG 2 cut(s) 74, 1162
Msp20I TGGCCA 1 cut(s) 1008
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 85, 105, 287, 416, 1286
NdeII GATC 5 cut(s) 49, 141, 745, 1207, 1487
NlaIV GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
NmeAIII GCCGAG 2 cut(s) 70, 1310
NmuCI GTSAC 3 cut(s) 542, 1166, 1291
NspI RCATGY 3 cut(s) 290, 492, 595
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 74
PaeR7I CTCGAG 2 cut(s) 56, 188
PaqCI CACCTGC 1 cut(s) 70
PciI ACATGT 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 245, 1362
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 6 cut(s) 153, 418, 530, 818, 1323, 1429
PleI GAGTC 3 cut(s) 945, 1139, 1244
PpsI GAGTC 3 cut(s) 945, 1139, 1244
PpuMI RGGWCCY 1 cut(s) 562
PscI ACATGT 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 7 cut(s) 89, 219, 563, 990, 1041, 1266, 1320
PspPI GGNCC 3 cut(s) 218, 562, 989
PspPPI RGGWCCY 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 188
PstI CTGCAG 2 cut(s) 945, 1291
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 2 cut(s) 596, 1156
RsaNI GTAC 2 cut(s) 595, 1155
RseI CAYNNNNRTG 2 cut(s) 74, 1162
SaqAI TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
SatI GCNGC 6 cut(s) 152, 417, 529, 817, 1322, 1428
Sau3AI GATC 5 cut(s) 49, 141, 745, 1207, 1487
Sau96I GGNCC 3 cut(s) 218, 562, 989
SchI GAGTC 3 cut(s) 946, 1140, 1244
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 1343
SfcI CTRYAG 4 cut(s) 941, 1175, 1287, 1398
Sfr274I CTCGAG 2 cut(s) 56, 188
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 2 cut(s) 562, 989
SlaI CTCGAG 2 cut(s) 56, 188
SmiMI CAYNNNNRTG 2 cut(s) 74, 1162
SmlI CTYRAG 2 cut(s) 56, 188
SmoI CTYRAG 2 cut(s) 56, 188
Sse9I AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
SsiI CCGC 5 cut(s) 152, 852, 986, 1151, 1322
SspI AATATT 1 cut(s) 517
SspMI CTAG 5 cut(s) 41, 116, 303, 351, 953
StyI CCWWGG 3 cut(s) 198, 476, 1142
TaaI ACNGT 2 cut(s) 397, 832
TaiI ACGT 2 cut(s) 524, 1193
TaqI TCGA 9 cut(s) 57, 135, 189, 374, 493, 777, 1210, 1218, 1365
TaqII GACCGA 1 cut(s) 135
TasI AATT 8 cut(s) 370, 496, 568, 631, 727, 894, 1080, 1370
TatI WGTACW 1 cut(s) 594
TauI GCSGC 2 cut(s) 154, 1324
TfiI GAWTC 2 cut(s) 245, 1362
Tru1I TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
Tru9I TTAA 6 cut(s) 366, 698, 738, 878, 918, 1373
TscAI CASTG 3 cut(s) 1009, 1066, 1296
TseFI GTSAC 3 cut(s) 542, 1166, 1291
TseI GCWGC 4 cut(s) 416, 528, 816, 1427
Tsp45I GTSAC 3 cut(s) 542, 1166, 1291
TspDTI ATGAA 5 cut(s) 338, 624, 674, 786, 812
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 1009, 1066, 1296
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 562, 989
XapI RAATTY 4 cut(s) 370, 568, 631, 727
XbaI TCTAGA 2 cut(s) 115, 302
XceI RCATGY 3 cut(s) 290, 492, 595
XhoI CTCGAG 2 cut(s) 56, 188
XmiI GTMKAC 1 cut(s) 949
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 5 cut(s) 41, 116, 303, 351, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.