Rw1G012280

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003215
Physical Location & Seq
Forward (+)
27451486 .. 27453781
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012280.1

Sequence Viewer

Length: 351 bp
ATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGACTGTAATGGGAGTTGCCAAAGCTGCGCCGCTCTCTGAGAGTGATTGGGATGAGAGACTTCTTATTCACATTTGCTATAGTCCAAGGAGATGGACATGTCGAAATTGTATGGTGACTTCAAATATTACATCAAGCAGCCTAAGACCTTGTTACTTCAAAATGGGAAGGGTCCTAACTTCCCTTCAAAGATTTAGGTGCATGTACAACTTCGATATTAGTTGCCGGTACCTCCACCCGTCCCCGTTTTTTTTCAAAGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

116

Amino Acids

13.4

Weight (kDa)

9.4

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 1 - 103 9.3e-27 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 2 cut(s) 12, 116
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 2 cut(s) 290, 314
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 6 cut(s) 61, 69, 207, 244, 272, 340
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 110, 222
ApoI RAATTY 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbvI GCAGC 2 cut(s) 97, 234
BccI CCATC 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 4 cut(s) 13, 111, 116, 223
BlsI GCNGC 4 cut(s) 14, 112, 117, 224
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 257, 314
BsaJI CCNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 97, 234
BshNI GGYRCC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 288
BspACI CCGC 2 cut(s) 12, 116
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 257, 314
BspT107I GGYRCC 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 123, 227
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 186, 289
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 97, 234
BstXI CCANNNNNNTGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 142
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 289, 313
CviAII CATG 3 cut(s) 16, 183, 286
CviJI RGCY 2 cut(s) 110, 225
CviKI_1 RGCY 2 cut(s) 110, 225
CviQI GTAC 2 cut(s) 289, 313
DdeI CTNAG 2 cut(s) 123, 227
Eco130I CCWWGG 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 19, 186, 289
FaiI YATR 5 cut(s) 17, 165, 184, 197, 287
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 15, 182, 285
Fnu4HI GCNGC 4 cut(s) 13, 111, 116, 223
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 13, 111, 116, 223
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 13, 111, 116, 223
HapII CCGG 1 cut(s) 310
HhaI GCGC 1 cut(s) 115
Hin1II CATG 3 cut(s) 19, 186, 289
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 13, 246, 278
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 56, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 123, 227
Hsp92II CATG 3 cut(s) 19, 186, 289
HspAI GCGC 1 cut(s) 113
KpnI GGTACC 1 cut(s) 316
LpnPI CCDG 2 cut(s) 98, 323
Lsp1109I GCAGC 2 cut(s) 97, 234
MaeIII GTNAC 2 cut(s) 199, 236
MbiI CCGCTC 1 cut(s) 118
MluCI AATT 2 cut(s) 64, 190
MnlI CCTC 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 58
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 3 cut(s) 19, 186, 289
NlaIV GGNNCC 2 cut(s) 257, 314
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 2 cut(s) 186, 289
PciI ACATGT 1 cut(s) 182
PctI GAATGC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 14, 112, 117, 224
PpuMI RGGWCCY 1 cut(s) 256
PscI ACATGT 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 257, 314
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 290, 314
RsaNI GTAC 2 cut(s) 289, 313
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 4 cut(s) 13, 111, 116, 223
Sau96I GGNCC 1 cut(s) 256
SetI ASST 5 cut(s) 24, 112, 235, 284, 318
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 2 cut(s) 64, 190
SsiI CCGC 2 cut(s) 12, 116
SspI AATATT 1 cut(s) 211
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 187, 297
TasI AATT 2 cut(s) 64, 190
TatI WGTACW 1 cut(s) 288
TauI GCSGC 2 cut(s) 15, 118
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 110, 222
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 64
XceI RCATGY 2 cut(s) 186, 289
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.