Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

10940305 .. 10941833

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAAACGCCACCACCACCACCACCACAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACTTCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGAGGAAGCGATTCAGGACGAAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAAGGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGAGCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGAGTTCGCGGTTTAGCTAACGACGGTGACGGTGGTGGTGGGAGATTTGAGAGTGATAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

312

Amino Acids

33.56

Weight (kDa)

8.5

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	50 - 104	2.2e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	179, 200, 542, 837
AclWI	GGATC	3 cut(s)	64, 77, 245
AcsI	RAATTY	3 cut(s)	218, 626, 755
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	8, 357, 754
AjnI	CCWGG	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	7 cut(s)	80, 275, 419, 488, 600, 845, 896
AluI	AGCT	7 cut(s)	80, 275, 419, 488, 600, 845, 896
Alw26I	GTCTC	3 cut(s)	170, 234, 345
AlwI	GGATC	3 cut(s)	64, 77, 245
Ama87I	CYCGRG	1 cut(s)	571
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	218, 626, 755
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	30, 278, 383, 866
AsuNHI	GCTAGC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	675, 921
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	4 cut(s)	358, 558, 821, 893
BceAI	ACGGC	4 cut(s)	211, 288, 311, 675
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	170, 234, 345
BfaI	CTAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	67, 567
BmeT110I	CYCGRG	1 cut(s)	571
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	67, 567
BmsI	GCATC	2 cut(s)	609, 720
BmtI	GCTAGC	1 cut(s)	419
BpiI	GAAGAC	2 cut(s)	675, 921
BpuEI	CTTGAG	2 cut(s)	152, 248
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	494
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 539, 569, 731, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	400, 735
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	5 cut(s)	396, 399, 411, 783, 906
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	2 cut(s)	291, 803
Bsh1236I	CGCG	4 cut(s)	179, 200, 542, 837
Bsh1285I	CGRYCG	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	3 cut(s)	67, 495, 762
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	3 cut(s)	170, 234, 345
BsmBI	CGTCTC	2 cut(s)	234, 345
BsoBI	CYCGRG	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	4 cut(s)	179, 200, 542, 837
BspLI	GGNNCC	1 cut(s)	71
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	3 cut(s)	64, 77, 245
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
Bst2UI	CCWGG	1 cut(s)	567
Bst6I	CTCTTC	2 cut(s)	348, 472
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	400, 735
BstFNI	CGCG	4 cut(s)	179, 200, 542, 837
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	6 cut(s)	17, 72, 253, 526, 637, 699
BstMAI	GTCTC	3 cut(s)	170, 234, 345
BstMBI	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	65, 565
BstUI	CGCG	4 cut(s)	179, 200, 542, 837
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	2 cut(s)	675, 921
BstX2I	RGATCY	2 cut(s)	69, 523
BstYI	RGATCY	2 cut(s)	69, 523
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	400, 735
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	202
Cfr42I	CCGCGG	1 cut(s)	543
CviAII	CATG	2 cut(s)	478, 623
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	6 cut(s)	16, 71, 252, 525, 636, 698
DpnII	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
Eam1104I	CTCTTC	2 cut(s)	348, 472
EarI	CTCTTC	2 cut(s)	348, 472
EciI	GGCGGA	5 cut(s)	313, 444, 547, 780, 921
Eco88I	CYCGRG	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	565
EcoT22I	ATGCAT	2 cut(s)	624, 735
Esp3I	CGTCTC	2 cut(s)	234, 345
FaeI	CATG	2 cut(s)	481, 626
FaiI	YATR	5 cut(s)	26, 224, 479, 624, 735
FatI	CATG	2 cut(s)	477, 622
FokI	GGATG	2 cut(s)	387, 742
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	201
HapII	CCGG	3 cut(s)	67, 495, 762
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	481, 626
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	7 cut(s)	28, 50, 105, 317, 582, 639, 652
HpaII	CCGG	3 cut(s)	67, 495, 762
HphI	GGTGA	4 cut(s)	30, 278, 383, 866
Hpy166II	GTNNAC	2 cut(s)	240, 916
Hpy188I	TCNGA	7 cut(s)	55, 63, 250, 523, 609, 657, 701
Hpy188III	TCNNGA	4 cut(s)	169, 586, 680, 936
Hpy8I	GTNNAC	2 cut(s)	240, 916
Hpy99I	CGWCG	3 cut(s)	854, 928, 937
HpyAV	CCTTC	3 cut(s)	243, 255, 760
HpyCH4IV	ACGT	3 cut(s)	433, 661, 912
HpyCH4V	TGCA	4 cut(s)	272, 622, 733, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	3 cut(s)	433, 661, 912
Hsp92II	CATG	2 cut(s)	481, 626
HspAI	GCGC	1 cut(s)	200
KspI	CCGCGG	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
LmnI	GCTCC	3 cut(s)	424, 770, 893
LpnPI	CCDG	8 cut(s)	54, 80, 90, 508, 552, 571, 579, 775
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	609, 720
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	3 cut(s)	433, 661, 912
MaeIII	GTNAC	9 cut(s)	98, 148, 194, 284, 290, 426, 662, 818, 854
MalI	GATC	6 cut(s)	16, 71, 252, 525, 636, 698
MboI	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
MboII	GAAGA	9 cut(s)	335, 338, 345, 441, 459, 628, 661, 680, 921
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	2 cut(s)	69, 523
MluCI	AATT	5 cut(s)	218, 372, 442, 626, 755
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	4 cut(s)	86, 97, 278, 626
Mph1103I	ATGCAT	2 cut(s)	624, 735
MroXI	GAANNNNTTC	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	3 cut(s)	67, 495, 762
MspR9I	CCNGG	2 cut(s)	67, 567
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	4 cut(s)	179, 200, 542, 837
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	481, 626
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	5 cut(s)	148, 194, 284, 662, 854
NsiI	ATGCAT	2 cut(s)	624, 735
NspI	RCATGY	1 cut(s)	481
OliI	CACNNNNGTG	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	4 cut(s)	213, 569, 929, 932
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	6 cut(s)	50, 105, 317, 582, 639, 652
Ple19I	CGATCG	1 cut(s)	637
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	71
PspXI	VCTCGAGB	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	69, 523
PvuI	CGATCG	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	543
Sau3AI	GATC	6 cut(s)	14, 69, 250, 523, 634, 696
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	67, 567
SfaNI	GCATC	2 cut(s)	609, 720
Sfr274I	CTCGAG	1 cut(s)	571
Sfr303I	CCGCGG	1 cut(s)	543
SgrBI	CCGCGG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	3 cut(s)	167, 263, 571
SmoI	CTYRAG	3 cut(s)	167, 263, 571
Sse9I	AATT	5 cut(s)	218, 372, 442, 626, 755
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	65, 565
TaiI	ACGT	3 cut(s)	436, 664, 915
TaqI	TCGA	2 cut(s)	572, 637
TasI	AATT	5 cut(s)	218, 372, 442, 626, 755
TauI	GCSGC	9 cut(s)	182, 185, 216, 371, 460, 539, 542, 545, 810
TfiI	GAWTC	6 cut(s)	50, 105, 317, 582, 639, 652
TseFI	GTSAC	5 cut(s)	148, 194, 284, 662, 854
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	5 cut(s)	148, 194, 284, 662, 854
TspDTI	ATGAA	2 cut(s)	435, 639
TspGWI	ACGGA	2 cut(s)	117, 414
XapI	RAATTY	3 cut(s)	218, 626, 755
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	2 cut(s)	624, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.