FvH4_6g48610

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015078
Physical Location & Seq
Forward (+)
36585535 .. 36587195
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48610.t1

Sequence Viewer

Length: 1083 bp
ATGGATATAGCGCCTTCCATCACCACCACCACCGCCAGCACAAAGTCCCCGGAAGCCGACAGTGATACTCCGACCCGGATCCAGCCAGCCAAGCCCATCTCCTTCAGCAACGGCGTCCTCAAACGTCACAACCCAACCCACCACCACCACAGCCACCACCACAACAGTAACATACCCGTGACGCCTGTAGTCGTCAGCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTAGGGGGACACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCTCCACCCCATCCGACCCCACCTCGCTAAAATGCGCTGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGACCCGGAGGACAATATCCCGGCTGTAGCTCCGGCGACTCATGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCTCCGCCAATCATCGGACACCGAAGCCCCAATTCAGCTTCCCCGCCACCGATCTCCTCCTCCTACTACCCATCAGCTCCCCACATGCTGCTAGCTCTCTCCACCGGACTCTCCGACAATCCGAACAACCACCACGGCGGTCAGATTGTCTCCCCCGGCGGGCCTAATTCCAGGAAGCGGTTCCGGACCAAGTTCAGCCAAGAACAGAAGGACAAGATGTTCCAGTTTGCGGAACGAGTCGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGACAAAGGTGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTTTCGCTAAGCGCGACGGTGTCGTCAGCGGTAGCGGTGGCGCTCTTAACGGCATTAGCGCCACCGTTACGGCTAGAATCCCCAACAACACCTCTCTTGATGAACAACTCCACAACAACATGAACGGTAACAACAACAATAACAACACCAGCAACGACGACGACGAGGAAGACGATCATCCGAACCACCACCACCACAACGGCGGTGGGAGCCTGGGCAACATCCCGAACCCGAATCACCATCACTACCAGGTTGGCCGCGATCACCCGCACGGTGTCACTAACGGTGGTTCGTCATCTTCTTCTTGA

Protein Analysis

361

Amino Acids

39.15

Weight (kDa)

7.07

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 65 - 119 5.9e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28920 AT5G15210
fragaria_vesca FvH4_6g48610
malus_domestica MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica Prupe.3G267800_v2.0.a1
pyrus_communis pycom111g04220 pycom17g04600
rosa_chinensis RchiOBHm_Chr2g0168471
rosa_laevigata RLG00000021783
rosa_multiflora Rmu_sc0007066.1_g000014
rosa_roxburghii Rroxscaffold_2G00082990
rosa_rugosa Rorug02G0533800
rosa_samantha Rh2AG603800 Rh2CG584800
rosa_wichuraiana Rw2G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 732
AccII CGCG 3 cut(s) 690, 789, 1035
AccIII TCCGGA 1 cut(s) 612
AclWI GGATC 2 cut(s) 73, 86
AcoI YGGCCR 1 cut(s) 1030
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 2 cut(s) 114, 182
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 6 cut(s) 234, 355, 443, 588, 606, 658
AjnI CCWGG 3 cut(s) 599, 987, 1023
AleI CACNNNNGTG 1 cut(s) 348
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 6 cut(s) 198, 231, 380, 467, 506, 524
AluI AGCT 6 cut(s) 198, 231, 380, 467, 506, 524
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 2 cut(s) 73, 86
Aor13HI TCCGGA 1 cut(s) 612
AoxI GGCC 2 cut(s) 590, 1030
ApeKI GCWGC 2 cut(s) 317, 517
ArsI GACNNNNNNTTYG 2 cut(s) 714, 746
Asp700I GAANNNNTTC 2 cut(s) 608, 776
AspLEI GCGC 6 cut(s) 13, 317, 690, 789, 818, 836
AspS9I GGNCC 2 cut(s) 590, 615
AsuC2I CCSGG 5 cut(s) 50, 76, 356, 371, 585
AsuHPI GGTGA 3 cut(s) 13, 1004, 1031
AsuNHI GCTAGC 1 cut(s) 520
AvaII GGWCC 1 cut(s) 615
BamHI GGATCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 951
BbvI GCAGC 2 cut(s) 304, 504
BccI CCATC 5 cut(s) 26, 104, 298, 508, 1023
BceAI ACGGC 6 cut(s) 127, 333, 580, 841, 861, 991
BcgI CGANNNNNNTGC 2 cut(s) 706, 740
BciT130I CCWGG 3 cut(s) 601, 989, 1025
BcnI CCSGG 5 cut(s) 50, 76, 356, 371, 585
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 2 cut(s) 521, 849
BfmI CTRYAG 2 cut(s) 186, 375
BfoI RGCGCY 3 cut(s) 14, 819, 837
BisI GCNGC 5 cut(s) 225, 259, 318, 518, 1033
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 5 cut(s) 226, 260, 319, 519, 1034
Bme1390I CCNGG 8 cut(s) 50, 76, 356, 371, 585, 601, 989, 1025
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 590, 615
BmiI GGNNCC 3 cut(s) 80, 611, 986
BmrFI CCNGG 8 cut(s) 50, 76, 356, 371, 585, 601, 989, 1025
BmsI GCATC 3 cut(s) 317, 669, 747
BmtI GCTAGC 1 cut(s) 524
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 951
Bpu10I CCTNAGC 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 5 cut(s) 50, 76, 356, 371, 585
BsaHI GRCGYC 2 cut(s) 114, 182
BsaJI CCNNGG 4 cut(s) 48, 562, 583, 988
BsaWI WCCGGW 2 cut(s) 533, 612
Bsc4I CCNNNNNNNGG 6 cut(s) 234, 355, 443, 588, 606, 658
Bse1I ACTGG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 612
BseBI CCWGG 3 cut(s) 601, 989, 1025
BseDI CCNNGG 4 cut(s) 48, 562, 583, 988
BseGI GGATG 5 cut(s) 290, 332, 762, 952, 996
BseLI CCNNNNNNNGG 6 cut(s) 234, 355, 443, 588, 606, 658
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 475, 478
BseXI GCAGC 2 cut(s) 304, 504
Bsh1236I CGCG 3 cut(s) 690, 789, 1035
BshFI GGCC 2 cut(s) 592, 1032
BsiSI CCGG 8 cut(s) 50, 76, 356, 371, 383, 534, 585, 613
BslFI GGGAC 2 cut(s) 31, 252
BslI CCNNNNNNNGG 6 cut(s) 234, 355, 443, 588, 606, 658
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 2 cut(s) 31, 252
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 592, 1032
Bsp13I TCCGGA 1 cut(s) 612
Bsp143I GATC 4 cut(s) 78, 480, 949, 1036
Bsp1720I GCTNAGC 1 cut(s) 783
BspANI GGCC 2 cut(s) 592, 1032
BspEI TCCGGA 1 cut(s) 612
BspFNI CGCG 3 cut(s) 690, 789, 1035
BspLI GGNNCC 3 cut(s) 80, 611, 986
BspOI GCTAGC 1 cut(s) 524
BspPI GGATC 2 cut(s) 73, 86
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 4 cut(s) 48, 562, 583, 988
BssMI GATC 4 cut(s) 78, 480, 949, 1036
BssNI GRCGYC 2 cut(s) 114, 182
Bst2UI CCWGG 3 cut(s) 601, 989, 1025
Bst4CI ACNGT 8 cut(s) 62, 167, 254, 794, 841, 902, 1049, 1061
BstACI GRCGYC 2 cut(s) 114, 182
BstC8I GCNNGC 6 cut(s) 37, 87, 229, 322, 522, 590
BstDEI CTNAG 2 cut(s) 232, 783
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 5 cut(s) 290, 332, 762, 952, 996
BstFNI CGCG 3 cut(s) 690, 789, 1035
BstH2I RGCGCY 3 cut(s) 14, 819, 837
BstHHI GCGC 6 cut(s) 13, 317, 690, 789, 818, 836
BstKTI GATC 4 cut(s) 81, 483, 952, 1039
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 4 cut(s) 78, 480, 949, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 91, 321, 984
BstNI CCWGG 3 cut(s) 601, 989, 1025
BstNSI RCATGY 1 cut(s) 517
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 8 cut(s) 48, 74, 354, 369, 583, 599, 987, 1023
BstSFI CTRYAG 2 cut(s) 186, 375
BstUI CGCG 3 cut(s) 690, 789, 1035
BstV1I GCAGC 2 cut(s) 304, 504
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 2 cut(s) 592, 1032
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 5 cut(s) 290, 332, 762, 952, 996
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 6 cut(s) 37, 87, 229, 322, 522, 590
CfoI GCGC 6 cut(s) 13, 317, 690, 789, 818, 836
Cfr13I GGNCC 2 cut(s) 590, 615
CseI GACGC 2 cut(s) 103, 190
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 5 cut(s) 268, 392, 514, 707, 895
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 232, 783
DpnI GATC 4 cut(s) 80, 482, 951, 1038
DpnII GATC 4 cut(s) 78, 480, 949, 1036
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 1030
EciI GGCGGA 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 615
Eco57I CTGAAG 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 599, 987, 1023
FaeI CATG 5 cut(s) 271, 395, 517, 710, 898
FaiI YATR 7 cut(s) 8, 173, 269, 393, 515, 708, 896
FaqI GGGAC 2 cut(s) 31, 252
FatI CATG 5 cut(s) 267, 391, 513, 706, 894
FauI CCCGC 4 cut(s) 435, 480, 581, 1050
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 225, 259, 318, 518, 1033
FokI GGATG 5 cut(s) 277, 339, 769, 939, 983
Fsp4HI GCNGC 5 cut(s) 225, 259, 318, 518, 1033
FspBI CTAG 2 cut(s) 521, 849
GlaI GCGC 6 cut(s) 12, 316, 689, 788, 817, 835
GluI GCNGC 5 cut(s) 225, 259, 318, 518, 1033
HaeII RGCGCY 3 cut(s) 14, 819, 837
HaeIII GGCC 2 cut(s) 592, 1032
HapII CCGG 8 cut(s) 50, 76, 356, 371, 383, 534, 585, 613
HgaI GACGC 2 cut(s) 103, 190
HhaI GCGC 6 cut(s) 13, 317, 690, 789, 818, 836
Hin1I GRCGYC 2 cut(s) 114, 182
Hin1II CATG 5 cut(s) 271, 395, 517, 710, 898
Hin6I GCGC 6 cut(s) 11, 315, 688, 787, 816, 834
HinP1I GCGC 6 cut(s) 11, 315, 688, 787, 816, 834
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 6 cut(s) 388, 537, 666, 729, 852, 1009
HpaII CCGG 8 cut(s) 50, 76, 356, 371, 383, 534, 585, 613
HphI GGTGA 3 cut(s) 13, 1004, 1031
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 8 cut(s) 72, 295, 446, 544, 552, 573, 728, 957
Hpy188III TCNNGA 5 cut(s) 214, 613, 872, 1000, 1080
Hpy8I GTNNAC 1 cut(s) 733
Hpy99I CGWCG 6 cut(s) 254, 695, 794, 935, 938, 941
HpyAV CCTTC 4 cut(s) 24, 112, 282, 631
HpyCH4III ACNGT 8 cut(s) 62, 167, 254, 794, 841, 902, 1049, 1061
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 682, 717, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 321, 984
HpyF3I CTNAG 2 cut(s) 232, 783
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 2 cut(s) 114, 182
Hsp92II CATG 5 cut(s) 271, 395, 517, 710, 898
HspAI GCGC 6 cut(s) 11, 315, 688, 787, 816, 834
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 4 cut(s) 78, 480, 949, 1036
LmnI GCTCC 3 cut(s) 385, 511, 984
Lsp1109I GCAGC 2 cut(s) 304, 504
LweI GCATC 3 cut(s) 317, 669, 747
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 2 cut(s) 521, 849
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 7 cut(s) 125, 167, 178, 350, 841, 902, 1051
MalI GATC 4 cut(s) 80, 482, 951, 1038
MboI GATC 4 cut(s) 78, 480, 949, 1036
MboII GAAGA 4 cut(s) 688, 956, 1065, 1068
MflI RGATCY 1 cut(s) 78
MluCI AATT 3 cut(s) 337, 460, 595
MlyI GAGTC 4 cut(s) 382, 531, 675, 738
MmeI TCCRAC 3 cut(s) 95, 318, 567
MroI TCCGGA 1 cut(s) 612
MroXI GAANNNNTTC 2 cut(s) 608, 776
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 2 cut(s) 176, 348
MspA1I CMGCKG 1 cut(s) 804
MspI CCGG 8 cut(s) 50, 76, 356, 371, 383, 534, 585, 613
MspR9I CCNGG 8 cut(s) 50, 76, 356, 371, 585, 601, 989, 1025
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 3 cut(s) 601, 989, 1025
MvnI CGCG 3 cut(s) 690, 789, 1035
MwoI GCNNNNNNNGC 3 cut(s) 91, 321, 984
NciI CCSGG 5 cut(s) 50, 76, 356, 371, 585
NdeII GATC 4 cut(s) 78, 480, 949, 1036
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 5 cut(s) 271, 395, 517, 710, 898
NlaIV GGNNCC 3 cut(s) 80, 611, 986
NmuCI GTSAC 4 cut(s) 125, 178, 350, 1051
NspI RCATGY 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 348
PcsI WCGNNNNNNNCGW 5 cut(s) 258, 699, 786, 936, 945
PctI GAATGC 1 cut(s) 212
PdmI GAANNNNTTC 2 cut(s) 608, 776
PfeI GAWTC 2 cut(s) 852, 1009
PflFI GACNNNGTC 2 cut(s) 701, 794
PfoI TCCNGGA 1 cut(s) 599
PkrI GCNGC 5 cut(s) 226, 260, 319, 519, 1034
PleI GAGTC 4 cut(s) 382, 531, 674, 737
PpsI GAGTC 4 cut(s) 382, 531, 674, 737
PshAI GACNNNNGTC 1 cut(s) 392
Psp6I CCWGG 3 cut(s) 599, 987, 1023
PspGI CCWGG 3 cut(s) 599, 987, 1023
PspN4I GGNNCC 3 cut(s) 80, 611, 986
PspPI GGNCC 2 cut(s) 590, 615
PsuI RGATCY 1 cut(s) 78
PsyI GACNNNGTC 2 cut(s) 701, 794
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 176, 348
SalI GTCGAC 1 cut(s) 731
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 5 cut(s) 225, 259, 318, 518, 1033
Sau3AI GATC 4 cut(s) 78, 480, 949, 1036
Sau96I GGNCC 2 cut(s) 590, 615
SchI GAGTC 4 cut(s) 382, 531, 675, 738
ScrFI CCNGG 8 cut(s) 50, 76, 356, 371, 585, 601, 989, 1025
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 3 cut(s) 317, 669, 747
SfcI CTRYAG 2 cut(s) 186, 375
SinI GGWCC 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 176, 348
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 337, 460, 595
SspMI CTAG 2 cut(s) 521, 849
StyD4I CCNGG 8 cut(s) 48, 74, 354, 369, 583, 599, 987, 1023
TaaI ACNGT 8 cut(s) 62, 167, 254, 794, 841, 902, 1049, 1061
TaiI ACGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 249, 399, 732
TasI AATT 3 cut(s) 337, 460, 595
TauI GCSGC 3 cut(s) 227, 261, 1035
TfiI GAWTC 2 cut(s) 852, 1009
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 4 cut(s) 125, 178, 350, 1051
TseI GCWGC 2 cut(s) 317, 517
Tsp45I GTSAC 4 cut(s) 125, 178, 350, 1051
TspDTI ATGAA 3 cut(s) 256, 891, 911
TspRI CASTG 1 cut(s) 67
Tth111I GACNNNGTC 2 cut(s) 701, 794
VpaK11BI GGWCC 1 cut(s) 615
XceI RCATGY 1 cut(s) 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 732
XmnI GAANNNNTTC 2 cut(s) 608, 776
XspI CTAG 2 cut(s) 521, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.