Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

3408795 .. 3409856

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATATAACCCCGTCCATCACCACCACCACCAACAACACCGCCAGTACAAAATCCCCGGAAGCCGACAGCGAAACTCCGACTCGGATCCAGCAACCCTTAAAGCCTCTGTCCTTCAGCAACGGCGTCCTCAAGCGCCACAACCCCACGCACCACCTCCACCACCAAAACATCCCCATCACCCCTGTCGTAGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCTGCGCTGGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCTCCCGCTGCCAACCTCGCCGACCCCACCTCACTAAAATGCGCTGCATGCGGCTGCCACCGCAATTTTCACCGCCGTGACCCCGAGGACCCCGTGCAGCCAAACACCCCCGCCGCAACAACGCATGTCATCGAGTACCAACCCCACCACCGCCACCATCCTCCTCCGCCGACTCACCCCGGCAACCGAAGCCCCAGTTCAGCTTCTCCACCGCCGATCTCGTCCTCCTACTACCCCTCCGCCCCCCACATGCTCTTGGCTCTGTCCACCGCTCACGAAAACGCCTTGGCAGGTGCGAATAATAATAACGCCGTTGCTATGCCCCAGGTCATGTCGCGGAGCCCGAATGCGAGGAAGCGGTTCAGGACCAAGTTCACCCAGGACCAGAAGGAGAAGATGTACCAATTCGCAGAGAGGGTCGGGTGGAAGATGCAGAAGAGAGACGAGGAAATCGTGCGGGAGTTCTGTAATGAGGCCGGCGTCGAAAAAGGGGTTCTCAAAGTCTGGATGCACAACAATAAGAATACCTTCTCCAAGCGAGACGTGCTCAATGGCGGCGCTGGCGGCCGTGCTGGTAGTTTAAGCCGACCCAGCTTTCTCCTTGAGCATTCCCACCACCACAACAACGGCACCAATGGCAACGGCACCAATGGCAACGGCAACAACAACGATGATGACGAGGAGGAGGATGATGATCAAAACGACAACAAGAACGGCGTTCCGAATCCGAATCATCATTACCAGGGTGCTGACGGTGGTGGCAACAATGGGTCGTCTTCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

354

Amino Acids

38.45

Weight (kDa)

7.12

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	65 - 119	6.5e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	902, 917
AccBSI	CCGCTC	1 cut(s)	545
AccII	CGCG	1 cut(s)	610
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	2 cut(s)	238, 838
AcuI	CTGAAG	1 cut(s)	100
AcyI	GRCGYC	2 cut(s)	126, 753
AfaI	GTAC	3 cut(s)	49, 410, 674
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	3 cut(s)	597, 651, 1014
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	476, 867
AluI	AGCT	2 cut(s)	476, 867
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	3 cut(s)	279, 708, 807
AlwI	GGATC	2 cut(s)	82, 95
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	238, 747, 838
ApeKI	GCWGC	6 cut(s)	227, 255, 281, 317, 327, 370
Asp700I	GAANNNNTTC	2 cut(s)	632, 800
AspLEI	GCGC	4 cut(s)	138, 232, 317, 833
AspS9I	GGNCC	3 cut(s)	361, 639, 655
AsuC2I	CCSGG	2 cut(s)	59, 453
AsuHPI	GGTGA	6 cut(s)	13, 172, 187, 335, 440, 640
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	3 cut(s)	361, 639, 655
BalI	TGGCCA	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	902, 917
BanII	GRGCYC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	1041
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	6 cut(s)	214, 242, 268, 304, 314, 382
BccI	CCATC	3 cut(s)	26, 185, 438
BciT130I	CCWGG	3 cut(s)	599, 653, 1016
BclI	TGATCA	1 cut(s)	967
BcnI	CCSGG	2 cut(s)	59, 453
BcoDI	GTCTC	3 cut(s)	279, 708, 807
BfoI	RGCGCY	2 cut(s)	139, 834
BfuAI	ACCTGC	1 cut(s)	554
Bme1390I	CCNGG	5 cut(s)	59, 453, 599, 653, 1016
Bme18I	GGWCC	3 cut(s)	361, 639, 655
BmeT110I	CYCGRG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	3 cut(s)	361, 639, 655
BmiI	GGNNCC	5 cut(s)	89, 363, 614, 904, 919
BmrFI	CCNGG	5 cut(s)	59, 453, 599, 653, 1016
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	693, 771
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	1041
BplI	GAGNNNNNCTC	2 cut(s)	804, 836
BpuEI	CTTGAG	3 cut(s)	116, 197, 896
BpuMI	CCSGG	2 cut(s)	59, 453
BsaBI	GATNNNNATC	1 cut(s)	966
BsaHI	GRCGYC	2 cut(s)	126, 753
BsaJI	CCNNGG	7 cut(s)	57, 357, 451, 558, 597, 651, 1015
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 524, 656, 686
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	45, 468
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	3 cut(s)	599, 653, 1016
BseDI	CCNNGG	7 cut(s)	57, 357, 451, 558, 597, 651, 1015
BseGI	GGATG	4 cut(s)	171, 430, 786, 967
BseJI	GATNNNNATC	1 cut(s)	966
BseNI	ACTGG	2 cut(s)	45, 468
BseRI	GAGGAG	3 cut(s)	426, 968, 971
BseX3I	CGGCCG	1 cut(s)	838
BseXI	GCAGC	6 cut(s)	214, 242, 268, 304, 314, 382
BseYI	CCCAGC	2 cut(s)	232, 863
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	3 cut(s)	240, 749, 840
BshNI	GGYRCC	2 cut(s)	902, 917
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	59, 453, 750
BsmAI	GTCTC	3 cut(s)	279, 708, 807
BsmBI	CGTCTC	3 cut(s)	279, 708, 807
BsmI	GAATGC	3 cut(s)	212, 625, 880
BsnI	GGCC	3 cut(s)	240, 749, 840
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	617, 822
Bsp143I	GATC	3 cut(s)	87, 489, 967
BspANI	GGCC	3 cut(s)	240, 749, 840
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	89, 363, 614, 904, 919
BspMI	ACCTGC	1 cut(s)	554
BspPI	GGATC	2 cut(s)	82, 95
BspT107I	GGYRCC	2 cut(s)	902, 917
BsrBI	CCGCTC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	45, 468
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	7 cut(s)	57, 357, 451, 558, 597, 651, 1015
BssMI	GATC	3 cut(s)	87, 489, 967
BssNI	GRCGYC	2 cut(s)	126, 753
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	3 cut(s)	599, 653, 1016
Bst4CI	ACNGT	1 cut(s)	1028
Bst6I	CTCTTC	1 cut(s)	704
BstACI	GRCGYC	2 cut(s)	126, 753
BstC8I	GCNNGC	3 cut(s)	322, 751, 835
BstF5I	GGATG	4 cut(s)	171, 430, 786, 967
BstFNI	CGCG	1 cut(s)	610
BstH2I	RGCGCY	2 cut(s)	139, 834
BstHHI	GCGC	4 cut(s)	138, 232, 317, 833
BstKTI	GATC	3 cut(s)	90, 492, 970
BstMAI	GTCTC	3 cut(s)	279, 708, 807
BstMBI	GATC	3 cut(s)	87, 489, 967
BstMCI	CGRYCG	1 cut(s)	841
BstNI	CCWGG	3 cut(s)	599, 653, 1016
BstNSI	RCATGY	3 cut(s)	324, 401, 526
BstSCI	CCNGG	5 cut(s)	57, 451, 597, 651, 1014
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	6 cut(s)	214, 242, 268, 304, 314, 382
BstV2I	GAAGAC	1 cut(s)	1041
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	240, 749, 840
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	4 cut(s)	171, 430, 786, 967
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	322, 751, 835
CfoI	GCGC	4 cut(s)	138, 232, 317, 833
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	3 cut(s)	361, 639, 655
CseI	GACGC	2 cut(s)	115, 742
Csp6I	GTAC	3 cut(s)	48, 409, 673
CviAII	CATG	5 cut(s)	268, 321, 398, 523, 604
CviQI	GTAC	3 cut(s)	48, 409, 673
DpnI	GATC	3 cut(s)	89, 491, 969
DpnII	GATC	3 cut(s)	87, 489, 967
EaeI	YGGCCR	2 cut(s)	238, 838
EagI	CGGCCG	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EciI	GGCGGA	2 cut(s)	429, 502
EclXI	CGGCCG	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	3 cut(s)	361, 639, 655
Eco52I	CGGCCG	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	597, 651, 1014
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	3 cut(s)	279, 708, 807
FaeI	CATG	5 cut(s)	271, 324, 401, 526, 607
FaiI	YATR	7 cut(s)	8, 269, 322, 399, 524, 593, 605
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FatI	CATG	5 cut(s)	267, 320, 397, 522, 603
FauI	CCCGC	3 cut(s)	286, 391, 723
FbaI	TGATCA	1 cut(s)	967
FokI	GGATG	4 cut(s)	158, 417, 793, 974
FriOI	GRGCYC	1 cut(s)	617
GlaI	GCGC	4 cut(s)	137, 231, 316, 832
GsaI	CCCAGC	2 cut(s)	236, 867
HaeII	RGCGCY	2 cut(s)	139, 834
HaeIII	GGCC	3 cut(s)	240, 749, 840
HapII	CCGG	3 cut(s)	59, 453, 750
HgaI	GACGC	2 cut(s)	115, 742
HhaI	GCGC	4 cut(s)	138, 232, 317, 833
Hin1I	GRCGYC	2 cut(s)	126, 753
Hin1II	CATG	5 cut(s)	271, 324, 401, 526, 607
Hin6I	GCGC	4 cut(s)	136, 230, 315, 831
HinP1I	GCGC	4 cut(s)	136, 230, 315, 831
HinfI	GANTC	4 cut(s)	82, 445, 997, 1003
HpaII	CCGG	3 cut(s)	59, 453, 750
HphI	GGTGA	6 cut(s)	13, 172, 187, 335, 440, 640
Hpy166II	GTNNAC	2 cut(s)	540, 648
Hpy188I	TCNGA	4 cut(s)	81, 87, 996, 1002
Hpy188III	TCNNGA	5 cut(s)	214, 548, 637, 778, 1059
Hpy8I	GTNNAC	2 cut(s)	540, 648
Hpy99I	CGWCG	2 cut(s)	254, 758
HpyAV	CCTTC	3 cut(s)	124, 655, 811
HpyCH4III	ACNGT	1 cut(s)	1028
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	4 cut(s)	320, 370, 706, 784
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	2 cut(s)	126, 753
Hsp92II	CATG	5 cut(s)	271, 324, 401, 526, 607
HspAI	GCGC	4 cut(s)	136, 230, 315, 831
KroI	GCCGGC	1 cut(s)	749
KroNI	GCCGGC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	967
Kzo9I	GATC	3 cut(s)	87, 489, 967
LmnI	GCTCC	1 cut(s)	612
Lsp1109I	GCAGC	6 cut(s)	214, 242, 268, 304, 314, 382
LweI	GCATC	2 cut(s)	693, 771
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	193, 350
MalI	GATC	3 cut(s)	89, 491, 969
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	3 cut(s)	87, 489, 967
MboII	GAAGA	6 cut(s)	679, 712, 721, 1041, 1044, 1047
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	617, 822
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	2 cut(s)	337, 677
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	76, 439
MmeI	TCCRAC	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	749
MroXI	GAANNNNTTC	2 cut(s)	632, 800
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	101, 854
MslI	CAYNNNNRTG	2 cut(s)	310, 348
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	227, 281
MspI	CCGG	3 cut(s)	59, 453, 750
MspR9I	CCNGG	5 cut(s)	59, 453, 599, 653, 1016
Mva1269I	GAATGC	3 cut(s)	212, 625, 880
MvaI	CCWGG	3 cut(s)	599, 653, 1016
MvnI	CGCG	1 cut(s)	610
NaeI	GCCGGC	1 cut(s)	751
NciI	CCSGG	2 cut(s)	59, 453
NdeII	GATC	3 cut(s)	87, 489, 967
NgoMIV	GCCGGC	1 cut(s)	749
NlaIII	CATG	5 cut(s)	271, 324, 401, 526, 607
NlaIV	GGNNCC	5 cut(s)	89, 363, 614, 904, 919
NmuCI	GTSAC	2 cut(s)	193, 350
NspI	RCATGY	3 cut(s)	324, 401, 526
OliI	CACNNNNGTG	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	4 cut(s)	258, 614, 723, 948
PctI	GAATGC	3 cut(s)	212, 625, 880
PdiI	GCCGGC	1 cut(s)	751
PdmI	GAANNNNTTC	2 cut(s)	632, 800
PfeI	GAWTC	2 cut(s)	997, 1003
PleI	GAGTC	2 cut(s)	76, 439
PpsI	GAGTC	2 cut(s)	76, 439
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	597, 651, 1014
PspFI	CCCAGC	2 cut(s)	232, 863
PspGI	CCWGG	3 cut(s)	597, 651, 1014
PspN4I	GGNNCC	5 cut(s)	89, 363, 614, 904, 919
PspPI	GGNCC	3 cut(s)	361, 639, 655
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	3 cut(s)	49, 410, 674
RsaNI	GTAC	3 cut(s)	48, 409, 673
RseI	CAYNNNNRTG	2 cut(s)	310, 348
SaqAI	TTAA	2 cut(s)	101, 854
Sau3AI	GATC	3 cut(s)	87, 489, 967
Sau96I	GGNCC	3 cut(s)	361, 639, 655
SchI	GAGTC	2 cut(s)	76, 439
ScrFI	CCNGG	5 cut(s)	59, 453, 599, 653, 1016
SduI	GDGCHC	2 cut(s)	617, 822
SfaNI	GCATC	2 cut(s)	693, 771
SinI	GGWCC	3 cut(s)	361, 639, 655
SmiMI	CAYNNNNRTG	2 cut(s)	310, 348
SmlI	CTYRAG	3 cut(s)	131, 212, 875
SmoI	CTYRAG	3 cut(s)	131, 212, 875
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	337, 677
StyD4I	CCNGG	5 cut(s)	57, 451, 597, 651, 1014
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	1028
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	249, 405, 756
TasI	AATT	2 cut(s)	337, 677
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	6 cut(s)	227, 261, 327, 389, 831, 840
TfiI	GAWTC	2 cut(s)	997, 1003
Tru1I	TTAA	2 cut(s)	101, 854
Tru9I	TTAA	2 cut(s)	101, 854
TseFI	GTSAC	2 cut(s)	193, 350
TseI	GCWGC	6 cut(s)	227, 255, 281, 317, 327, 370
Tsp45I	GTSAC	2 cut(s)	193, 350
TspDTI	ATGAA	1 cut(s)	256
VpaK11BI	GGWCC	3 cut(s)	361, 639, 655
XceI	RCATGY	3 cut(s)	324, 401, 526
XmnI	GAANNNNTTC	2 cut(s)	632, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.