Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Forward (+)

25017505 .. 25018794

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G267800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATATAACCCCTTCCATCACCACCACCACCAACAACACCACCAGCACAAAATCCCCGGAAGCAGACAGCGAAACCCCGACCCGGATCCAACCCGCCAAGCCTTTGTCCTTCAGCAACGGCGTCCTCAAACGCCACAACCCCCACCCCCACCACCACCACCTTCACCACCACAACATCCCCATCACGCCGGTCATCGTCACCTACAAAGAATGCCTAAAGAACCACGCAGCCACCTTGGGTGGTCACGCTCTCGACGGCTGCGGCGAGTTCATGCCCTCTCCAACGGCCATACCCACCGACCCCACCTCTCTAAAATGTGCTGCATGCGGCTGCCACCGCAATTTCCACCGCCGTGACCCCGAAGACCCCATGCCGCCATCCTCCGCCGCCGCCACGACTCACGTCATCGAGTACCAACCCCACCATCGCCACCATCCTCCGCCGCCGACTCACGGAGGCAACCGAAGCCCCAATTCGGCTTCCCCGCCGCCGATCTCGTCCTCTTACTACCCTTCTGCCCCCCACATGCTCTTGGCTCTTTCGACGGCTCATGAAAACGCTTTGGGCGGTCCTAATAACAATCATAGTCCTCAACCCCCAATTGTTTCGCCGAGCCCGAACGCGAGGAAGCGGTTCAGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTACCAATTTGCAGAGAGGGTTGGGTGGAAGATGCAGAAGCGGGACGAGGAGATTGTGCAGGAGTTTTGCAATGAGATTAATGTGGACAAAGGGGTTCTCAAGGTTTGGATGCACAACAATAAGAACACATTTGCCAAAAGAGACGTCACCAATGGCAGTGGCGGTGGTCTTAGCGGTGGGGTTAGCAGACCCAACATTCTGCTTGAGGAAGCTCACAACAACGGCAACGGCAACGGCAACGGCAACGGCAACAACAACGTCGACGATGAAAATGATGAACACAACGACGACAACAACAACAGCGATATGCAGAACCTAAATCACTACCAGGGTACTGATGGTGGTGCGGCGGGACATGTTGGCACCAATGGGTCGTCGTCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

355

Amino Acids

38.44

Weight (kDa)

6.71

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	822
AccB1I	GGYRCC	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	936
AccII	CGCG	1 cut(s)	626
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	123, 819
AfaI	GTAC	3 cut(s)	416, 677, 1009
AfiI	CCNNNNNNNGG	3 cut(s)	84, 455, 478
AflIII	ACRYGT	1 cut(s)	1030
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	654, 1002
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	887
AluI	AGCT	1 cut(s)	887
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	2 cut(s)	82, 95
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	230, 261, 323, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AseI	ATTAAT	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	572, 642
AsuC2I	CCSGG	2 cut(s)	59, 85
AsuHPI	GGTGA	4 cut(s)	13, 158, 193, 814
AvaII	GGWCC	2 cut(s)	572, 642
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	1037
BanII	GRGCYC	1 cut(s)	620
BbsI	GAAGAC	2 cut(s)	372, 1047
BbvI	GCAGC	4 cut(s)	242, 248, 310, 320
BccI	CCATC	6 cut(s)	26, 191, 388, 435, 444, 1007
BciT130I	CCWGG	2 cut(s)	656, 1004
BcnI	CCSGG	2 cut(s)	59, 85
BcoDI	GTCTC	1 cut(s)	810
Bme1390I	CCNGG	4 cut(s)	59, 85, 656, 1004
Bme18I	GGWCC	2 cut(s)	572, 642
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	572, 642
BmiI	GGNNCC	2 cut(s)	89, 1039
BmrFI	CCNGG	4 cut(s)	59, 85, 656, 1004
BmsI	GCATC	2 cut(s)	696, 774
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	2 cut(s)	372, 1047
BpuEI	CTTGAG	2 cut(s)	758, 899
BpuMI	CCSGG	2 cut(s)	59, 85
BsaHI	GRCGYC	2 cut(s)	123, 819
BsaJI	CCNNGG	3 cut(s)	57, 237, 1003
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 455, 478
Bse118I	RCCGGY	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	751
BseBI	CCWGG	2 cut(s)	656, 1004
BseDI	CCNNGG	3 cut(s)	57, 237, 1003
BseGI	GGATG	4 cut(s)	177, 380, 436, 789
BseLI	CCNNNNNNNGG	3 cut(s)	84, 455, 478
BseMI	GCAATG	1 cut(s)	751
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	4 cut(s)	242, 248, 310, 320
BsgI	GTGCAG	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	1037
BsiSI	CCGG	3 cut(s)	59, 85, 191
BslFI	GGGAC	2 cut(s)	731, 1041
BslI	CCNNNNNNNGG	3 cut(s)	84, 455, 478
BsmAI	GTCTC	1 cut(s)	810
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	2 cut(s)	731, 1041
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	87, 495
BspANI	GGCC	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	89, 1039
BspPI	GGATC	2 cut(s)	82, 95
BspT107I	GGYRCC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	57, 237, 1003
BssMI	GATC	2 cut(s)	87, 495
BssNI	GRCGYC	2 cut(s)	123, 819
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	656, 1004
BstACI	GRCGYC	2 cut(s)	123, 819
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	845
BstF5I	GGATG	4 cut(s)	177, 380, 436, 789
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	2 cut(s)	90, 498
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	2 cut(s)	87, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 468
BstNI	CCWGG	2 cut(s)	656, 1004
BstNSI	RCATGY	3 cut(s)	330, 532, 1034
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	4 cut(s)	57, 83, 654, 1002
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	4 cut(s)	242, 248, 310, 320
BstV2I	GAAGAC	2 cut(s)	372, 1047
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	413
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	4 cut(s)	177, 380, 436, 789
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	572, 642
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	415, 676, 1008
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	6 cut(s)	274, 327, 373, 529, 554, 1031
CviQI	GTAC	3 cut(s)	415, 676, 1008
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	2 cut(s)	89, 497
DpnII	GATC	2 cut(s)	87, 495
EaeI	YGGCCR	1 cut(s)	288
EciI	GGCGGA	2 cut(s)	376, 432
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	572, 642
Eco57I	CTGAAG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	654, 1002
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	6 cut(s)	277, 330, 376, 532, 557, 1034
FaqI	GGGAC	2 cut(s)	731, 1041
FatI	CATG	6 cut(s)	273, 326, 372, 528, 553, 1030
FauI	CCCGC	4 cut(s)	103, 495, 708, 1018
FblI	GTMKAC	1 cut(s)	936
FokI	GGATG	4 cut(s)	164, 367, 423, 796
FriOI	GRGCYC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	59, 85, 191
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	123, 819
Hin1II	CATG	6 cut(s)	277, 330, 376, 532, 557, 1034
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	2 cut(s)	400, 451
HpaII	CCGG	3 cut(s)	59, 85, 191
HphI	GGTGA	4 cut(s)	13, 158, 193, 814
Hpy166II	GTNNAC	2 cut(s)	760, 937
Hpy188III	TCNNGA	4 cut(s)	254, 554, 640, 1062
Hpy8I	GTNNAC	2 cut(s)	760, 937
Hpy99I	CGWCG	6 cut(s)	260, 550, 938, 941, 965, 1054
HpyAV	CCTTC	5 cut(s)	24, 121, 173, 525, 658
HpyCH4IV	ACGT	3 cut(s)	405, 819, 933
HpyCH4V	TGCA	7 cut(s)	326, 686, 709, 733, 744, 787, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 468
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	3 cut(s)	405, 819, 933
Hsp92I	GRCGYC	2 cut(s)	123, 819
Hsp92II	CATG	6 cut(s)	277, 330, 376, 532, 557, 1034
Kzo9I	GATC	2 cut(s)	87, 495
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	4 cut(s)	242, 248, 310, 320
LweI	GCATC	2 cut(s)	696, 774
MaeII	ACGT	3 cut(s)	405, 819, 933
MaeIII	GTNAC	4 cut(s)	199, 245, 356, 820
MalI	GATC	2 cut(s)	89, 497
MboI	GATC	2 cut(s)	87, 495
MboII	GAAGA	4 cut(s)	377, 715, 1047, 1050
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	620
MluCI	AATT	4 cut(s)	343, 475, 603, 680
MlyI	GAGTC	2 cut(s)	394, 445
MmeI	TCCRAC	2 cut(s)	115, 308
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	3 cut(s)	59, 85, 191
MspR9I	CCNGG	4 cut(s)	59, 85, 656, 1004
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	2 cut(s)	656, 1004
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	339, 468
NciI	CCSGG	2 cut(s)	59, 85
NdeII	GATC	2 cut(s)	87, 495
NlaIII	CATG	6 cut(s)	277, 330, 376, 532, 557, 1034
NlaIV	GGNNCC	2 cut(s)	89, 1039
NmeAIII	GCCGAG	1 cut(s)	639
NmuCI	GTSAC	4 cut(s)	199, 245, 356, 820
NspI	RCATGY	3 cut(s)	330, 532, 1034
OliI	CACNNNNGTG	1 cut(s)	354
PaeI	GCATGC	1 cut(s)	330
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	1030
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 617
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	635
PleI	GAGTC	2 cut(s)	394, 445
PpsI	GAGTC	2 cut(s)	394, 445
PscI	ACATGT	1 cut(s)	1030
PshAI	GACNNNNGTC	1 cut(s)	404
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	654, 1002
PspGI	CCWGG	2 cut(s)	654, 1002
PspN4I	GGNNCC	2 cut(s)	89, 1039
PspPI	GGNCC	2 cut(s)	572, 642
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	3 cut(s)	416, 677, 1009
RsaNI	GTAC	3 cut(s)	415, 676, 1008
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	1 cut(s)	753
Sau3AI	GATC	2 cut(s)	87, 495
Sau96I	GGNCC	2 cut(s)	572, 642
SchI	GAGTC	2 cut(s)	394, 445
ScrFI	CCNGG	4 cut(s)	59, 85, 656, 1004
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	696, 774
SgrDI	CGTCGACG	1 cut(s)	935
SinI	GGWCC	2 cut(s)	572, 642
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	773, 878
SmoI	CTYRAG	2 cut(s)	773, 878
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	4 cut(s)	343, 475, 603, 680
StyD4I	CCNGG	4 cut(s)	57, 83, 654, 1002
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	3 cut(s)	408, 822, 936
TaqI	TCGA	4 cut(s)	255, 411, 545, 936
TasI	AATT	4 cut(s)	343, 475, 603, 680
TauI	GCSGC	8 cut(s)	267, 333, 379, 392, 395, 448, 493, 1025
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	4 cut(s)	199, 245, 356, 820
TseI	GCWGC	4 cut(s)	230, 261, 323, 333
Tsp45I	GTSAC	4 cut(s)	199, 245, 356, 820
TspDTI	ATGAA	4 cut(s)	262, 570, 957, 966
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	572, 642
VspI	ATTAAT	1 cut(s)	753
XceI	RCATGY	3 cut(s)	330, 532, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XmiI	GTMKAC	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	635
ZraI	GACGTC	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.