Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

5708944 .. 5710613

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATATAGCGCCTTCCATCACCACCACCACCACCACCACCACCAGCACCAAATCTCCAGAAGCCGACAGCGAGACTCCGACCCGGATCCAGCCCGCCAAGCCCATCTCCTTCAGCAACGGCGTCCTCAAGCGGCACCACCCCGCCCACCACCACCACACTCACCACCACAACAGCAGCATCCCCGTTACTCCCGTCGTTGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACGGACCCCACCTCGCTAAAATGCGCCGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCAGTCGCTCCCGCAACTCATGTCATCGAGTACCAGCCCCACCACCGGCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCCCCGCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTGCTGGCTCTCTCCACCGGGATTTCTGACAACCCCAACAACCACCACGGCGGCCAAATTGTGTCCCCCGGCGGGCCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCCAGTTTGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAACACCTTCACCAAGCGCGACGGCAGCGGTGGCGCTGGTAATGGCATTAACACAACCGCCGCCGCGAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAACACCAGCAACGAAGAGGACGAGGACGACGATCATCCCAACAACAACAACCACAACCACAACCACAACAACAACGGTGGTGGGAGTCTGAGCAACATTCCCAACCCGATTCACCATCACTACCAGCTTGGCGGTGATCACCCTCACGGTGTCACTAACGGTGGGTCGTCATCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

363

Amino Acids

39.46

Weight (kDa)

7.05

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	68 - 122	2.5e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	135, 429
AccII	CGCG	3 cut(s)	699, 798, 845
AccIII	TCCGGA	1 cut(s)	621
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	2 cut(s)	247, 577
AcuI	CTGAAG	2 cut(s)	97, 495
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	413, 862
AfiI	CCNNNNNNNGG	5 cut(s)	364, 426, 452, 597, 667
AjnI	CCWGG	1 cut(s)	636
AleI	CACNNNNGTG	1 cut(s)	357
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
AluBI	AGCT	4 cut(s)	240, 476, 515, 1036
AluI	AGCT	4 cut(s)	240, 476, 515, 1036
Alw26I	GTCTC	2 cut(s)	68, 841
AlwI	GGATC	2 cut(s)	82, 95
Aor13HI	TCCGGA	1 cut(s)	621
AoxI	GGCC	3 cut(s)	247, 577, 599
ApeKI	GCWGC	3 cut(s)	177, 526, 804
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp700I	GAANNNNTTC	2 cut(s)	617, 785
AspLEI	GCGC	5 cut(s)	13, 326, 699, 798, 815
AspS9I	GGNCC	4 cut(s)	304, 599, 624, 868
AsuC2I	CCSGG	3 cut(s)	85, 544, 594
AsuHPI	GGTGA	7 cut(s)	13, 155, 196, 781, 1013, 1040, 1055
AvaII	GGWCC	3 cut(s)	304, 624, 868
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	135, 429
BanII	GRGCYC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	189, 513, 816
BccI	CCATC	3 cut(s)	26, 113, 1032
BceAI	ACGGC	4 cut(s)	136, 342, 589, 817
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BciT130I	CCWGG	1 cut(s)	638
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	3 cut(s)	85, 544, 594
BcoDI	GTCTC	2 cut(s)	68, 841
BfoI	RGCGCY	2 cut(s)	14, 816
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	4 cut(s)	85, 544, 594, 638
Bme18I	GGWCC	3 cut(s)	304, 624, 868
BmgT120I	GGNCC	4 cut(s)	304, 599, 624, 868
BmiI	GGNNCC	6 cut(s)	89, 137, 306, 431, 464, 620
BmrFI	CCNGG	4 cut(s)	85, 544, 594, 638
BmsI	GCATC	4 cut(s)	189, 326, 678, 756
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	113, 206
BpuMI	CCSGG	3 cut(s)	85, 544, 594
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	571, 592
BsaWI	WCCGGW	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	5 cut(s)	364, 426, 452, 597, 667
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	661
BseAI	TCCGGA	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	571, 592
BseGI	GGATG	4 cut(s)	180, 341, 771, 943
BseLI	CCNNNNNNNGG	5 cut(s)	364, 426, 452, 597, 667
BseMII	CTCAG	1 cut(s)	989
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	2 cut(s)	484, 487
BseXI	GCAGC	3 cut(s)	189, 513, 816
Bsh1236I	CGCG	3 cut(s)	699, 798, 845
BshFI	GGCC	3 cut(s)	249, 579, 601
BshNI	GGYRCC	2 cut(s)	135, 429
BsiSI	CCGG	7 cut(s)	85, 365, 380, 427, 543, 594, 622
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	5 cut(s)	364, 426, 452, 597, 667
BsmAI	GTCTC	2 cut(s)	68, 841
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	249, 579, 601
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	87, 489, 940, 1045
BspANI	GGCC	3 cut(s)	249, 579, 601
BspCNI	CTCAG	1 cut(s)	990
BspEI	TCCGGA	1 cut(s)	621
BspFNI	CGCG	3 cut(s)	699, 798, 845
BspLI	GGNNCC	6 cut(s)	89, 137, 306, 431, 464, 620
BspPI	GGATC	2 cut(s)	82, 95
BspT107I	GGYRCC	2 cut(s)	135, 429
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	571, 592
BssMI	GATC	4 cut(s)	87, 489, 940, 1045
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	6 cut(s)	263, 860, 893, 986, 1058, 1070
Bst6I	CTCTTC	1 cut(s)	918
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	96, 238, 331, 531, 599
BstDEI	CTNAG	1 cut(s)	998
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	4 cut(s)	180, 341, 771, 943
BstFNI	CGCG	3 cut(s)	699, 798, 845
BstH2I	RGCGCY	2 cut(s)	14, 816
BstHHI	GCGC	5 cut(s)	13, 326, 699, 798, 815
BstKTI	GATC	4 cut(s)	90, 492, 943, 1048
BstMAI	GTCTC	2 cut(s)	68, 841
BstMBI	GATC	4 cut(s)	87, 489, 940, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	100, 246, 330, 436, 804, 810
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	4 cut(s)	83, 542, 592, 636
BstUI	CGCG	3 cut(s)	699, 798, 845
BstV1I	GCAGC	3 cut(s)	189, 513, 816
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	249, 579, 601
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	4 cut(s)	180, 341, 771, 943
Cac8I	GCNNGC	5 cut(s)	96, 238, 331, 531, 599
CfoI	GCGC	5 cut(s)	13, 326, 699, 798, 815
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	4 cut(s)	304, 599, 624, 868
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	412, 861
CspCI	CAANNNNNGTGG	4 cut(s)	967, 970, 1002, 1005
CviAII	CATG	5 cut(s)	277, 401, 523, 716, 886
CviQI	GTAC	2 cut(s)	412, 861
DdeI	CTNAG	1 cut(s)	998
DpnI	GATC	4 cut(s)	89, 491, 942, 1047
DpnII	GATC	4 cut(s)	87, 489, 940, 1045
EaeI	YGGCCR	2 cut(s)	247, 577
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco24I	GRGCYC	1 cut(s)	467
Eco47I	GGWCC	3 cut(s)	304, 624, 868
Eco57I	CTGAAG	2 cut(s)	97, 495
EcoRII	CCWGG	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	467
FaeI	CATG	5 cut(s)	280, 404, 526, 719, 889
FaiI	YATR	6 cut(s)	8, 278, 402, 524, 717, 887
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	5 cut(s)	276, 400, 522, 715, 885
FauI	CCCGC	6 cut(s)	103, 151, 400, 444, 489, 590
FbaI	TGATCA	1 cut(s)	1045
FokI	GGATG	4 cut(s)	167, 348, 778, 930
FriOI	GRGCYC	1 cut(s)	467
GlaI	GCGC	5 cut(s)	12, 325, 698, 797, 814
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	2 cut(s)	14, 816
HaeIII	GGCC	3 cut(s)	249, 579, 601
HapII	CCGG	7 cut(s)	85, 365, 380, 427, 543, 594, 622
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	5 cut(s)	13, 326, 699, 798, 815
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	280, 404, 526, 719, 889
Hin6I	GCGC	5 cut(s)	11, 324, 697, 796, 813
HinP1I	GCGC	5 cut(s)	11, 324, 697, 796, 813
HinfI	GANTC	4 cut(s)	76, 738, 994, 1018
HpaII	CCGG	7 cut(s)	85, 365, 380, 427, 543, 594, 622
HphI	GGTGA	7 cut(s)	13, 155, 196, 781, 1013, 1040, 1055
Hpy188I	TCNGA	4 cut(s)	81, 553, 737, 999
Hpy188III	TCNNGA	5 cut(s)	59, 223, 454, 622, 1089
Hpy99I	CGWCG	5 cut(s)	200, 263, 704, 803, 941
HpyAV	CCTTC	6 cut(s)	24, 121, 291, 519, 640, 796
HpyCH4III	ACNGT	6 cut(s)	263, 860, 893, 986, 1058, 1070
HpyCH4V	TGCA	3 cut(s)	691, 726, 769
HpyF10VI	GCNNNNNNNGC	6 cut(s)	100, 246, 330, 436, 804, 810
HpyF3I	CTNAG	1 cut(s)	998
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	280, 404, 526, 719, 889
HspAI	GCGC	5 cut(s)	11, 324, 697, 796, 813
Kpn2I	TCCGGA	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	4 cut(s)	87, 489, 940, 1045
LmnI	GCTCC	4 cut(s)	394, 462, 520, 640
Lsp1109I	GCAGC	3 cut(s)	189, 513, 816
LweI	GCATC	4 cut(s)	189, 326, 678, 756
MaeIII	GTNAC	4 cut(s)	187, 202, 893, 1060
MalI	GATC	4 cut(s)	89, 491, 942, 1047
MboI	GATC	4 cut(s)	87, 489, 940, 1045
MboII	GAAGA	4 cut(s)	697, 935, 1074, 1077
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	3 cut(s)	346, 469, 582
MlyI	GAGTC	3 cut(s)	70, 747, 1003
MmeI	TCCRAC	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	621
MroXI	GAANNNNTTC	2 cut(s)	617, 785
MseI	TTAA	1 cut(s)	828
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	807
MspI	CCGG	7 cut(s)	85, 365, 380, 427, 543, 594, 622
MspR9I	CCNGG	4 cut(s)	85, 544, 594, 638
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	3 cut(s)	699, 798, 845
MwoI	GCNNNNNNNGC	6 cut(s)	100, 246, 330, 436, 804, 810
NciI	CCSGG	3 cut(s)	85, 544, 594
NdeII	GATC	4 cut(s)	87, 489, 940, 1045
NlaIII	CATG	5 cut(s)	280, 404, 526, 719, 889
NlaIV	GGNNCC	6 cut(s)	89, 137, 306, 431, 464, 620
NmuCI	GTSAC	2 cut(s)	202, 1060
NspI	RCATGY	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	4 cut(s)	267, 708, 927, 936
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	2 cut(s)	617, 785
PfeI	GAWTC	1 cut(s)	1018
PflFI	GACNNNGTC	1 cut(s)	710
PleI	GAGTC	3 cut(s)	70, 746, 1002
PpsI	GAGTC	3 cut(s)	70, 746, 1002
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	6 cut(s)	89, 137, 306, 431, 464, 620
PspPI	GGNCC	4 cut(s)	304, 599, 624, 868
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	710
RsaI	GTAC	2 cut(s)	413, 862
RsaNI	GTAC	2 cut(s)	412, 861
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	828
Sau3AI	GATC	4 cut(s)	87, 489, 940, 1045
Sau96I	GGNCC	4 cut(s)	304, 599, 624, 868
ScaI	AGTACT	1 cut(s)	862
SchI	GAGTC	3 cut(s)	70, 747, 1003
ScrFI	CCNGG	4 cut(s)	85, 544, 594, 638
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	7 cut(s)	209, 242, 314, 478, 517, 788, 1038
SfaNI	GCATC	4 cut(s)	189, 326, 678, 756
SinI	GGWCC	3 cut(s)	304, 624, 868
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	128, 221
SmoI	CTYRAG	2 cut(s)	128, 221
Sse9I	AATT	3 cut(s)	346, 469, 582
SspI	AATATT	1 cut(s)	376
StyD4I	CCNGG	4 cut(s)	83, 542, 592, 636
TaaI	ACNGT	6 cut(s)	263, 860, 893, 986, 1058, 1070
TaqI	TCGA	3 cut(s)	258, 408, 741
TasI	AATT	3 cut(s)	346, 469, 582
TatI	WGTACW	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	1018
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TseFI	GTSAC	2 cut(s)	202, 1060
TseI	GCWGC	3 cut(s)	177, 526, 804
Tsp45I	GTSAC	2 cut(s)	202, 1060
TspDTI	ATGAA	2 cut(s)	265, 902
TspGWI	ACGGA	1 cut(s)	317
Tth111I	GACNNNGTC	1 cut(s)	710
VpaK11BI	GGWCC	3 cut(s)	304, 624, 868
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	617, 785
ZrmI	AGTACT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.