Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007066.1

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

59569 .. 60630

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007066.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggatatagcgccttccatcaccaccacgaccacgaccaccaccagcaccaaatcccccgaagccgacagcgacactccgacccggatccagcccgccaagcccatctccttcagcaacggggtcctcaagcgccaccaccccgcccaccaccaccaccacaacagcagcatccccgtcactcccgtagtcgtcacctacaaagaatgcctcaagaaccacgccgccagcttgggcggccacgccctcgacggttgcggcgagttcatgccttcccccaccgccacgccaaccgaccccacctcgctaaaatgcgccgcctgcggatgccaccgcaatttccaccgccgtgagccggaggacaatattccggcagtcgctcccgcaactcatgtcatcgagtaccagccccaccaccgccaccacccgccgccgccactcatcgggaacaggagccccaattcagcttcccctccgccgatctcctcctcctactacccttcagctccccacatgctgctggctctctccaccgggatttctgacaacccgaacaaccaccacggcggccaaattgtctcccccggcgggcctaatgggaggaagcggttccggaccaagtttagccaggagcagaaggacaaaatgttccagtttgcggagagagttgggtggaagatgcagaagcgcgacgaggacatcgtccatgagttctgcaacgaaatcggagtcgataaaggagttctcaaggtgtggatgcacaacaacaagaacaccttcgccaagcgcgacggcagcggtggcgctggtaatggcattaacacaaccgccgccgcgagacttcccaacagtactttggaccaaatccacaacaacatgaacggtaacaacaataacaccagcaacgaagaggacgaggacgacgatcatcccaacaacaacaacaacaacaacggtggtgggagtctgagcaacattccgaacccgattcaccatcactaccagcttggcggcgatcacccgcacggtgtcactaacggtgggtcgtcatcttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

353

Amino Acids

38.17

Weight (kDa)

6.99

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	690, 789, 836
AccIII	TCCGGA	1 cut(s)	612
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	2 cut(s)	238, 568
AcuI	CTGAAG	2 cut(s)	97, 486
AfaI	GTAC	2 cut(s)	404, 853
AfiI	CCNNNNNNNGG	4 cut(s)	355, 443, 588, 658
AjnI	CCWGG	1 cut(s)	627
AleI	CACNNNNGTG	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	231, 467, 506, 1006
AluI	AGCT	4 cut(s)	231, 467, 506, 1006
Alw26I	GTCTC	2 cut(s)	583, 832
AlwI	GGATC	2 cut(s)	82, 95
Aor13HI	TCCGGA	1 cut(s)	612
AoxI	GGCC	3 cut(s)	238, 568, 590
ApeKI	GCWGC	3 cut(s)	168, 517, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	714, 746
Asp700I	GAANNNNTTC	2 cut(s)	608, 776
AspLEI	GCGC	6 cut(s)	13, 135, 317, 690, 789, 806
AspS9I	GGNCC	4 cut(s)	124, 590, 615, 859
AsuC2I	CCSGG	3 cut(s)	85, 535, 585
AsuHPI	GGTGA	4 cut(s)	13, 187, 983, 1010
AvaII	GGWCC	3 cut(s)	124, 615, 859
BamHI	GGATCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	180, 504, 807
BccI	CCATC	3 cut(s)	26, 113, 1002
BceAI	ACGGC	3 cut(s)	333, 580, 808
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	1 cut(s)	629
BcnI	CCSGG	3 cut(s)	85, 535, 585
BcoDI	GTCTC	2 cut(s)	583, 832
BfoI	RGCGCY	3 cut(s)	14, 136, 807
BmcAI	AGTACT	1 cut(s)	853
Bme1390I	CCNGG	4 cut(s)	85, 535, 585, 629
Bme18I	GGWCC	3 cut(s)	124, 615, 859
BmgT120I	GGNCC	4 cut(s)	124, 590, 615, 859
BmiI	GGNNCC	4 cut(s)	89, 125, 455, 611
BmrFI	CCNGG	4 cut(s)	85, 535, 585, 629
BmsI	GCATC	4 cut(s)	180, 317, 669, 747
BpuEI	CTTGAG	3 cut(s)	113, 197, 731
BpuMI	CCSGG	3 cut(s)	85, 535, 585
BsaJI	CCNNGG	2 cut(s)	562, 583
BsaWI	WCCGGW	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 443, 588, 658
Bse1I	ACTGG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	2 cut(s)	562, 583
BseGI	GGATG	4 cut(s)	171, 332, 762, 928
BseLI	CCNNNNNNNGG	4 cut(s)	355, 443, 588, 658
BseMII	CTCAG	1 cut(s)	959
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	2 cut(s)	475, 478
BseXI	GCAGC	3 cut(s)	180, 504, 807
Bsh1236I	CGCG	3 cut(s)	690, 789, 836
BshFI	GGCC	3 cut(s)	240, 570, 592
BsiSI	CCGG	6 cut(s)	85, 356, 371, 534, 585, 613
BslI	CCNNNNNNNGG	4 cut(s)	355, 443, 588, 658
BsmAI	GTCTC	2 cut(s)	583, 832
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	240, 570, 592
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	87, 480, 925, 1015
BspANI	GGCC	3 cut(s)	240, 570, 592
BspCNI	CTCAG	1 cut(s)	960
BspEI	TCCGGA	1 cut(s)	612
BspFNI	CGCG	3 cut(s)	690, 789, 836
BspLI	GGNNCC	4 cut(s)	89, 125, 455, 611
BspPI	GGATC	2 cut(s)	82, 95
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	562, 583
BssMI	GATC	4 cut(s)	87, 480, 925, 1015
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	6 cut(s)	254, 851, 884, 956, 1028, 1040
Bst6I	CTCTTC	1 cut(s)	903
BstC8I	GCNNGC	5 cut(s)	96, 229, 322, 522, 590
BstDEI	CTNAG	1 cut(s)	968
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	171, 332, 762, 928
BstFNI	CGCG	3 cut(s)	690, 789, 836
BstH2I	RGCGCY	3 cut(s)	14, 136, 807
BstHHI	GCGC	6 cut(s)	13, 135, 317, 690, 789, 806
BstKTI	GATC	4 cut(s)	90, 483, 928, 1018
BstMAI	GTCTC	2 cut(s)	583, 832
BstMBI	GATC	4 cut(s)	87, 480, 925, 1015
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 237, 321, 795, 801
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	4 cut(s)	83, 533, 583, 627
BstUI	CGCG	3 cut(s)	690, 789, 836
BstV1I	GCAGC	3 cut(s)	180, 504, 807
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	240, 570, 592
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	171, 332, 762, 928
Cac8I	GCNNGC	5 cut(s)	96, 229, 322, 522, 590
CfoI	GCGC	6 cut(s)	13, 135, 317, 690, 789, 806
Cfr13I	GGNCC	4 cut(s)	124, 590, 615, 859
Csp6I	GTAC	2 cut(s)	403, 852
CspCI	CAANNNNNGTGG	4 cut(s)	937, 940, 972, 975
CviAII	CATG	5 cut(s)	268, 392, 514, 707, 877
CviQI	GTAC	2 cut(s)	403, 852
DdeI	CTNAG	1 cut(s)	968
DpnI	GATC	4 cut(s)	89, 482, 927, 1017
DpnII	GATC	4 cut(s)	87, 480, 925, 1015
EaeI	YGGCCR	2 cut(s)	238, 568
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
EciI	GGCGGA	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	3 cut(s)	124, 615, 859
Eco57I	CTGAAG	2 cut(s)	97, 486
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	5 cut(s)	271, 395, 517, 710, 880
FaiI	YATR	6 cut(s)	8, 269, 393, 515, 708, 878
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	5 cut(s)	267, 391, 513, 706, 876
FauI	CCCGC	6 cut(s)	103, 151, 391, 435, 581, 1029
FokI	GGATG	4 cut(s)	158, 339, 769, 915
FriOI	GRGCYC	1 cut(s)	458
GlaI	GCGC	6 cut(s)	12, 134, 316, 689, 788, 805
HaeII	RGCGCY	3 cut(s)	14, 136, 807
HaeIII	GGCC	3 cut(s)	240, 570, 592
HapII	CCGG	6 cut(s)	85, 356, 371, 534, 585, 613
HhaI	GCGC	6 cut(s)	13, 135, 317, 690, 789, 806
Hin1II	CATG	5 cut(s)	271, 395, 517, 710, 880
Hin6I	GCGC	6 cut(s)	11, 133, 315, 688, 787, 804
HinP1I	GCGC	6 cut(s)	11, 133, 315, 688, 787, 804
HinfI	GANTC	3 cut(s)	729, 964, 988
HpaII	CCGG	6 cut(s)	85, 356, 371, 534, 585, 613
HphI	GGTGA	4 cut(s)	13, 187, 983, 1010
Hpy188I	TCNGA	5 cut(s)	81, 544, 728, 969, 981
Hpy188III	TCNNGA	4 cut(s)	214, 445, 613, 1059
Hpy99I	CGWCG	4 cut(s)	254, 695, 794, 926
HpyAV	CCTTC	6 cut(s)	24, 121, 282, 510, 631, 787
HpyCH4III	ACNGT	6 cut(s)	254, 851, 884, 956, 1028, 1040
HpyCH4V	TGCA	3 cut(s)	682, 717, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 237, 321, 795, 801
HpyF3I	CTNAG	1 cut(s)	968
Hsp92II	CATG	5 cut(s)	271, 395, 517, 710, 880
HspAI	GCGC	6 cut(s)	11, 133, 315, 688, 787, 804
Kpn2I	TCCGGA	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	87, 480, 925, 1015
LmnI	GCTCC	4 cut(s)	385, 453, 511, 631
Lsp1109I	GCAGC	3 cut(s)	180, 504, 807
LweI	GCATC	4 cut(s)	180, 317, 669, 747
MaeIII	GTNAC	4 cut(s)	178, 193, 884, 1030
MalI	GATC	4 cut(s)	89, 482, 927, 1017
MboI	GATC	4 cut(s)	87, 480, 925, 1015
MboII	GAAGA	4 cut(s)	688, 920, 1044, 1047
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	3 cut(s)	337, 460, 573
MlyI	GAGTC	2 cut(s)	738, 973
MmeI	TCCRAC	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	612
MroXI	GAANNNNTTC	2 cut(s)	608, 776
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	6 cut(s)	85, 356, 371, 534, 585, 613
MspR9I	CCNGG	4 cut(s)	85, 535, 585, 629
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	3 cut(s)	690, 789, 836
MwoI	GCNNNNNNNGC	5 cut(s)	100, 237, 321, 795, 801
NciI	CCSGG	3 cut(s)	85, 535, 585
NdeII	GATC	4 cut(s)	87, 480, 925, 1015
NlaIII	CATG	5 cut(s)	271, 395, 517, 710, 880
NlaIV	GGNNCC	4 cut(s)	89, 125, 455, 611
NmuCI	GTSAC	3 cut(s)	178, 193, 1030
NspI	RCATGY	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	5 cut(s)	258, 699, 786, 912, 921
PctI	GAATGC	1 cut(s)	212
PdmI	GAANNNNTTC	2 cut(s)	608, 776
PfeI	GAWTC	1 cut(s)	988
PflFI	GACNNNGTC	1 cut(s)	701
PleI	GAGTC	2 cut(s)	737, 972
PpsI	GAGTC	2 cut(s)	737, 972
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	4 cut(s)	89, 125, 455, 611
PspPI	GGNCC	4 cut(s)	124, 590, 615, 859
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	2 cut(s)	404, 853
RsaNI	GTAC	2 cut(s)	403, 852
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	819
Sau3AI	GATC	4 cut(s)	87, 480, 925, 1015
Sau96I	GGNCC	4 cut(s)	124, 590, 615, 859
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	2 cut(s)	738, 973
ScrFI	CCNGG	4 cut(s)	85, 535, 585, 629
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	8 cut(s)	200, 233, 305, 469, 508, 753, 779, 1008
SfaNI	GCATC	4 cut(s)	180, 317, 669, 747
SinI	GGWCC	3 cut(s)	124, 615, 859
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	3 cut(s)	128, 212, 746
SmoI	CTYRAG	3 cut(s)	128, 212, 746
Sse9I	AATT	3 cut(s)	337, 460, 573
SspI	AATATT	1 cut(s)	367
StyD4I	CCNGG	4 cut(s)	83, 533, 583, 627
TaaI	ACNGT	6 cut(s)	254, 851, 884, 956, 1028, 1040
TaqI	TCGA	3 cut(s)	249, 399, 732
TasI	AATT	3 cut(s)	337, 460, 573
TatI	WGTACW	1 cut(s)	851
TfiI	GAWTC	1 cut(s)	988
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TseFI	GTSAC	3 cut(s)	178, 193, 1030
TseI	GCWGC	3 cut(s)	168, 517, 795
Tsp45I	GTSAC	3 cut(s)	178, 193, 1030
TspDTI	ATGAA	2 cut(s)	256, 893
Tth111I	GACNNNGTC	1 cut(s)	701
VpaK11BI	GGWCC	3 cut(s)	124, 615, 859
XceI	RCATGY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	608, 776
ZrmI	AGTACT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.