RLG00000021783

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015078
Physical Location & Seq
Forward (+)
78185238 .. 78186329
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021783

Sequence Viewer

Length: 1092 bp
ATGGATATAGCGCCTTCCATCACCACCACCACCACTACCACCACCAGCACCAAATCCCCCGAAGCCGACAGCGACACTCCGACCCGGATCCAGCCCACCAAGCCCATCTCCTTCAGCAACGGCGTCCTCAAGCGCCACCACCCCGCCCACCACCACCACCACCACACTCACCACCACAACAGCAGCATCCCCGTCACTCCCGTCATCGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACCGACCCCACCTCGCTAAAATGCGCCGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCAGTCGCTCCCGCAACTCATGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCCCCGCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTCTTGGCTCTCTCCACCGGGATTTCAGACAACCCGAACAACCACCACGGCGGCCAAATTGTGTCCCCCGGCGGGCCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAAGACAAGATGTTCCAGTTTGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAACACCTTCGCCAAGCGCGACGGCAGCGGTGGCGCTGGTAATGGTAATGGTAATGGTAATGGCATTAGCACAACCGCCGCCGCGAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAGCAACGAAGAGGACGAGGACGACGATCATCCCAACAACAACAACAACAACGGTGGTGGGAGTCTGAGCAACATTCCGAACCCGATTCACCATCACTACCAGCTTGGCGGCGATCACCCGCACGGTGTCACTAACGGTGGGTCGTCATCTTCTTCTTGA

Protein Analysis

364

Amino Acids

39.25

Weight (kDa)

7.04

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 70 - 124 2.8e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28920 AT5G15210
fragaria_vesca FvH4_6g48610
malus_domestica MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica Prupe.3G267800_v2.0.a1
pyrus_communis pycom111g04220 pycom17g04600
rosa_chinensis RchiOBHm_Chr2g0168471
rosa_laevigata RLG00000021783
rosa_multiflora Rmu_sc0007066.1_g000014
rosa_roxburghii Rroxscaffold_2G00082990
rosa_rugosa Rorug02G0533800
rosa_samantha Rh2AG603800 Rh2CG584800
rosa_wichuraiana Rw2G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 705, 804, 869
AccIII TCCGGA 1 cut(s) 627
AclWI GGATC 2 cut(s) 82, 95
AcoI YGGCCR 2 cut(s) 253, 583
AcuI CTGAAG 2 cut(s) 97, 501
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 419, 886
AfiI CCNNNNNNNGG 4 cut(s) 370, 458, 603, 673
AjnI CCWGG 1 cut(s) 642
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 4 cut(s) 246, 482, 521, 1036
AluI AGCT 4 cut(s) 246, 482, 521, 1036
Alw26I GTCTC 1 cut(s) 865
AlwI GGATC 2 cut(s) 82, 95
Aor13HI TCCGGA 1 cut(s) 627
AoxI GGCC 3 cut(s) 253, 583, 605
ApeKI GCWGC 2 cut(s) 183, 810
ArsI GACNNNNNNTTYG 2 cut(s) 729, 761
Asp700I GAANNNNTTC 2 cut(s) 623, 791
AspLEI GCGC 6 cut(s) 13, 135, 332, 705, 804, 821
AspS9I GGNCC 3 cut(s) 605, 630, 892
AsuC2I CCSGG 3 cut(s) 85, 550, 600
AsuHPI GGTGA 5 cut(s) 13, 161, 202, 1013, 1040
AvaII GGWCC 2 cut(s) 630, 892
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 195, 822
BccI CCATC 3 cut(s) 26, 113, 1032
BceAI ACGGC 4 cut(s) 136, 348, 595, 823
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BciT130I CCWGG 1 cut(s) 644
BcnI CCSGG 3 cut(s) 85, 550, 600
BcoDI GTCTC 1 cut(s) 865
BfoI RGCGCY 3 cut(s) 14, 136, 822
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 4 cut(s) 85, 550, 600, 644
Bme18I GGWCC 2 cut(s) 630, 892
BmgT120I GGNCC 3 cut(s) 605, 630, 892
BmiI GGNNCC 3 cut(s) 89, 470, 626
BmrFI CCNGG 4 cut(s) 85, 550, 600, 644
BmsI GCATC 4 cut(s) 195, 332, 684, 762
BpuEI CTTGAG 2 cut(s) 113, 212
BpuMI CCSGG 3 cut(s) 85, 550, 600
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 577, 598
BsaWI WCCGGW 1 cut(s) 627
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 458, 603, 673
Bse1I ACTGG 1 cut(s) 667
BseAI TCCGGA 1 cut(s) 627
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 577, 598
BseGI GGATG 4 cut(s) 186, 347, 777, 961
BseLI CCNNNNNNNGG 4 cut(s) 370, 458, 603, 673
BseMII CTCAG 1 cut(s) 989
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 2 cut(s) 490, 493
BseXI GCAGC 2 cut(s) 195, 822
Bsh1236I CGCG 3 cut(s) 705, 804, 869
BshFI GGCC 3 cut(s) 255, 585, 607
BsiSI CCGG 6 cut(s) 85, 371, 386, 549, 600, 628
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 4 cut(s) 370, 458, 603, 673
BsmAI GTCTC 1 cut(s) 865
BsmFI GGGAC 1 cut(s) 580
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 3 cut(s) 255, 585, 607
Bsp1286I GDGCHC 1 cut(s) 473
Bsp13I TCCGGA 1 cut(s) 627
Bsp143I GATC 4 cut(s) 87, 495, 958, 1045
BspANI GGCC 3 cut(s) 255, 585, 607
BspCNI CTCAG 1 cut(s) 990
BspEI TCCGGA 1 cut(s) 627
BspFNI CGCG 3 cut(s) 705, 804, 869
BspLI GGNNCC 3 cut(s) 89, 470, 626
BspPI GGATC 2 cut(s) 82, 95
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 577, 598
BssMI GATC 4 cut(s) 87, 495, 958, 1045
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 6 cut(s) 269, 884, 917, 986, 1058, 1070
Bst6I CTCTTC 1 cut(s) 936
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 244, 337, 605
BstDEI CTNAG 1 cut(s) 998
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 4 cut(s) 186, 347, 777, 961
BstFNI CGCG 3 cut(s) 705, 804, 869
BstH2I RGCGCY 3 cut(s) 14, 136, 822
BstHHI GCGC 6 cut(s) 13, 135, 332, 705, 804, 821
BstKTI GATC 4 cut(s) 90, 498, 961, 1048
BstMAI GTCTC 1 cut(s) 865
BstMBI GATC 4 cut(s) 87, 495, 958, 1045
BstMWI GCNNNNNNNGC 5 cut(s) 100, 252, 336, 810, 816
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 4 cut(s) 83, 548, 598, 642
BstUI CGCG 3 cut(s) 705, 804, 869
BstV1I GCAGC 2 cut(s) 195, 822
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 3 cut(s) 255, 585, 607
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 4 cut(s) 186, 347, 777, 961
Cac8I GCNNGC 3 cut(s) 244, 337, 605
CfoI GCGC 6 cut(s) 13, 135, 332, 705, 804, 821
Cfr13I GGNCC 3 cut(s) 605, 630, 892
CseI GACGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 418, 885
CspCI CAANNNNNGTGG 4 cut(s) 967, 970, 1002, 1005
CviAII CATG 5 cut(s) 283, 407, 529, 722, 910
CviQI GTAC 2 cut(s) 418, 885
DdeI CTNAG 1 cut(s) 998
DpnI GATC 4 cut(s) 89, 497, 960, 1047
DpnII GATC 4 cut(s) 87, 495, 958, 1045
EaeI YGGCCR 2 cut(s) 253, 583
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Eco24I GRGCYC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 630, 892
Eco57I CTGAAG 2 cut(s) 97, 501
EcoRII CCWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 473
FaeI CATG 5 cut(s) 286, 410, 532, 725, 913
FaiI YATR 6 cut(s) 8, 284, 408, 530, 723, 911
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 1 cut(s) 580
FatI CATG 5 cut(s) 282, 406, 528, 721, 909
FauI CCCGC 6 cut(s) 151, 406, 450, 495, 596, 1059
FokI GGATG 4 cut(s) 173, 354, 784, 948
FriOI GRGCYC 1 cut(s) 473
GlaI GCGC 6 cut(s) 12, 134, 331, 704, 803, 820
HaeII RGCGCY 3 cut(s) 14, 136, 822
HaeIII GGCC 3 cut(s) 255, 585, 607
HapII CCGG 6 cut(s) 85, 371, 386, 549, 600, 628
HgaI GACGC 1 cut(s) 112
HhaI GCGC 6 cut(s) 13, 135, 332, 705, 804, 821
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 286, 410, 532, 725, 913
Hin6I GCGC 6 cut(s) 11, 133, 330, 703, 802, 819
HinP1I GCGC 6 cut(s) 11, 133, 330, 703, 802, 819
HinfI GANTC 3 cut(s) 744, 994, 1018
HpaII CCGG 6 cut(s) 85, 371, 386, 549, 600, 628
HphI GGTGA 5 cut(s) 13, 161, 202, 1013, 1040
Hpy188I TCNGA 5 cut(s) 81, 559, 743, 999, 1011
Hpy188III TCNNGA 4 cut(s) 229, 460, 628, 1089
Hpy99I CGWCG 4 cut(s) 269, 710, 809, 959
HpyAV CCTTC 5 cut(s) 24, 121, 297, 525, 802
HpyCH4III ACNGT 6 cut(s) 269, 884, 917, 986, 1058, 1070
HpyCH4V TGCA 3 cut(s) 697, 732, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 252, 336, 810, 816
HpyF3I CTNAG 1 cut(s) 998
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 286, 410, 532, 725, 913
HspAI GCGC 6 cut(s) 11, 133, 330, 703, 802, 819
Kpn2I TCCGGA 1 cut(s) 627
Kzo9I GATC 4 cut(s) 87, 495, 958, 1045
LmnI GCTCC 4 cut(s) 400, 468, 526, 646
Lsp1109I GCAGC 2 cut(s) 195, 822
LweI GCATC 4 cut(s) 195, 332, 684, 762
MaeIII GTNAC 4 cut(s) 193, 208, 917, 1060
MalI GATC 4 cut(s) 89, 497, 960, 1047
MboI GATC 4 cut(s) 87, 495, 958, 1045
MboII GAAGA 4 cut(s) 703, 953, 1074, 1077
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 3 cut(s) 352, 475, 588
MlyI GAGTC 2 cut(s) 753, 1003
MmeI TCCRAC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 627
MroXI GAANNNNTTC 2 cut(s) 623, 791
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 813
MspI CCGG 6 cut(s) 85, 371, 386, 549, 600, 628
MspR9I CCNGG 4 cut(s) 85, 550, 600, 644
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 3 cut(s) 705, 804, 869
MwoI GCNNNNNNNGC 5 cut(s) 100, 252, 336, 810, 816
NciI CCSGG 3 cut(s) 85, 550, 600
NdeII GATC 4 cut(s) 87, 495, 958, 1045
NlaIII CATG 5 cut(s) 286, 410, 532, 725, 913
NlaIV GGNNCC 3 cut(s) 89, 470, 626
NmuCI GTSAC 3 cut(s) 193, 208, 1060
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 363
PcsI WCGNNNNNNNCGW 5 cut(s) 273, 714, 801, 945, 954
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 2 cut(s) 623, 791
PfeI GAWTC 1 cut(s) 1018
PflFI GACNNNGTC 1 cut(s) 716
PleI GAGTC 2 cut(s) 752, 1002
PpsI GAGTC 2 cut(s) 752, 1002
Psp6I CCWGG 1 cut(s) 642
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 89, 470, 626
PspPI GGNCC 3 cut(s) 605, 630, 892
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 2 cut(s) 419, 886
RsaNI GTAC 2 cut(s) 418, 885
RseI CAYNNNNRTG 1 cut(s) 363
Sau3AI GATC 4 cut(s) 87, 495, 958, 1045
Sau96I GGNCC 3 cut(s) 605, 630, 892
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 2 cut(s) 753, 1003
ScrFI CCNGG 4 cut(s) 85, 550, 600, 644
SduI GDGCHC 1 cut(s) 473
SetI ASST 7 cut(s) 215, 248, 320, 484, 523, 794, 1038
SfaNI GCATC 4 cut(s) 195, 332, 684, 762
SinI GGWCC 2 cut(s) 630, 892
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 128, 227
SmoI CTYRAG 2 cut(s) 128, 227
Sse9I AATT 3 cut(s) 352, 475, 588
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 83, 548, 598, 642
TaaI ACNGT 6 cut(s) 269, 884, 917, 986, 1058, 1070
TaqI TCGA 3 cut(s) 264, 414, 747
TasI AATT 3 cut(s) 352, 475, 588
TatI WGTACW 1 cut(s) 884
TfiI GAWTC 1 cut(s) 1018
TseFI GTSAC 3 cut(s) 193, 208, 1060
TseI GCWGC 2 cut(s) 183, 810
Tsp45I GTSAC 3 cut(s) 193, 208, 1060
TspDTI ATGAA 2 cut(s) 271, 926
Tth111I GACNNNGTC 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 630, 892
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmnI GAANNNNTTC 2 cut(s) 623, 791
ZrmI AGTACT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.