Rh2AG603800

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015078
Physical Location & Seq
Forward (+)
83149240 .. 83151065
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG603800.1

Sequence Viewer

Length: 1041 bp
ATGGATATAGCGCCTTCCACCACCACCACCAGCACCAAATCCCCCGAAGCCGACAGCGACACTCCGACCCGGATCCAGCCCGCCAAGCCCATCTCCTTCAGCAACGGGGTCCTCAAGCGCCACCACCCCGCCCACCACCACCACCACAACAGCAGCATCCCCGTCACTCCCGTCGTCGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACCGACCCCACCTCGCTAAAATGCGCCGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCGGTCGCTCCCGCAACTCATGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCTCCTCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTGCTGGCTCTCTCCACCGGGATTTCTGACAACCCGAGCAACCACCACGGCGGCCAAATTGTGTCTCCCGGCGGGCCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTGCCAGTTTGCGGAGAGGGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAGGTGTGGATGCACAACAACAAGAACACCTTCGCCAAGCGCGACGGCAGCGGAGGCGCTGGTAATGGCATTAACACAACCGCCGCCGCTAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAGCAACGAAGAGGACGACGACGACGATCATCCCAACAACAACAACAACGGTGGTGGGAGTCTGAGCAACATTCCGAACCCGATTCACCATCACTACCAGCTTGGCGGCGATCACCCGCACGGTGTCACTAACGGTGGGTCGTCATCTTCTTCTTGA

Protein Analysis

346

Amino Acids

37.36

Weight (kDa)

6.99

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 60 - 114 2.3e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28920 AT5G15210
fragaria_vesca FvH4_6g48610
malus_domestica MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica Prupe.3G267800_v2.0.a1
pyrus_communis pycom111g04220 pycom17g04600
rosa_chinensis RchiOBHm_Chr2g0168471
rosa_laevigata RLG00000021783
rosa_multiflora Rmu_sc0007066.1_g000014
rosa_roxburghii Rroxscaffold_2G00082990
rosa_rugosa Rorug02G0533800
rosa_samantha Rh2AG603800 Rh2CG584800
rosa_wichuraiana Rw2G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 675, 774
AccIII TCCGGA 1 cut(s) 597
AclWI GGATC 2 cut(s) 67, 80
AcoI YGGCCR 2 cut(s) 223, 553
AcuI CTGAAG 2 cut(s) 82, 471
AfaI GTAC 2 cut(s) 389, 838
AfiI CCNNNNNNNGG 3 cut(s) 340, 428, 643
AjnI CCWGG 1 cut(s) 612
AleI CACNNNNGTG 1 cut(s) 333
AluBI AGCT 4 cut(s) 216, 452, 491, 985
AluI AGCT 4 cut(s) 216, 452, 491, 985
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 2 cut(s) 67, 80
Ama87I CYCGRG 1 cut(s) 535
Aor13HI TCCGGA 1 cut(s) 597
AoxI GGCC 3 cut(s) 223, 553, 575
ApeKI GCWGC 3 cut(s) 153, 502, 780
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
Asp700I GAANNNNTTC 2 cut(s) 593, 761
AspLEI GCGC 6 cut(s) 13, 120, 302, 675, 774, 791
AspS9I GGNCC 4 cut(s) 109, 575, 600, 844
AsuC2I CCSGG 3 cut(s) 70, 520, 570
AsuHPI GGTGA 3 cut(s) 172, 962, 989
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 3 cut(s) 109, 600, 844
BamHI GGATCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 165, 489, 792
BccI CCATC 2 cut(s) 98, 981
BceAI ACGGC 3 cut(s) 318, 565, 793
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 3 cut(s) 70, 520, 570
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 1 cut(s) 822
BfoI RGCGCY 3 cut(s) 14, 121, 792
BmcAI AGTACT 1 cut(s) 838
Bme1390I CCNGG 4 cut(s) 70, 520, 570, 614
Bme18I GGWCC 3 cut(s) 109, 600, 844
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 4 cut(s) 109, 575, 600, 844
BmiI GGNNCC 4 cut(s) 74, 110, 440, 596
BmrFI CCNGG 4 cut(s) 70, 520, 570, 614
BmsI GCATC 4 cut(s) 165, 302, 654, 732
BpuEI CTTGAG 3 cut(s) 98, 182, 716
BpuMI CCSGG 3 cut(s) 70, 520, 570
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 1 cut(s) 597
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 428, 643
Bse1I ACTGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 597
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 4 cut(s) 156, 317, 747, 913
BseLI CCNNNNNNNGG 3 cut(s) 340, 428, 643
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 3 cut(s) 447, 460, 463
BseXI GCAGC 3 cut(s) 165, 489, 792
Bsh1236I CGCG 2 cut(s) 675, 774
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 225, 555, 577
BsiEI CGRYCG 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 6 cut(s) 70, 341, 356, 519, 570, 598
BslI CCNNNNNNNGG 3 cut(s) 340, 428, 643
BsmAI GTCTC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 3 cut(s) 225, 555, 577
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 443
Bsp13I TCCGGA 1 cut(s) 597
Bsp143I GATC 4 cut(s) 72, 465, 910, 994
BspANI GGCC 3 cut(s) 225, 555, 577
BspCNI CTCAG 1 cut(s) 939
BspEI TCCGGA 1 cut(s) 597
BspFNI CGCG 2 cut(s) 675, 774
BspLI GGNNCC 4 cut(s) 74, 110, 440, 596
BspPI GGATC 2 cut(s) 67, 80
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 72, 465, 910, 994
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 6 cut(s) 239, 836, 869, 935, 1007, 1019
Bst6I CTCTTC 1 cut(s) 888
BstC8I GCNNGC 5 cut(s) 81, 214, 307, 507, 575
BstDEI CTNAG 1 cut(s) 947
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 4 cut(s) 156, 317, 747, 913
BstFNI CGCG 2 cut(s) 675, 774
BstH2I RGCGCY 3 cut(s) 14, 121, 792
BstHHI GCGC 6 cut(s) 13, 120, 302, 675, 774, 791
BstKTI GATC 4 cut(s) 75, 468, 913, 997
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 4 cut(s) 72, 465, 910, 994
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 5 cut(s) 85, 222, 306, 780, 786
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 4 cut(s) 68, 518, 568, 612
BstUI CGCG 2 cut(s) 675, 774
BstV1I GCAGC 3 cut(s) 165, 489, 792
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 3 cut(s) 225, 555, 577
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 4 cut(s) 156, 317, 747, 913
Cac8I GCNNGC 5 cut(s) 81, 214, 307, 507, 575
CfoI GCGC 6 cut(s) 13, 120, 302, 675, 774, 791
Cfr13I GGNCC 4 cut(s) 109, 575, 600, 844
Csp6I GTAC 2 cut(s) 388, 837
CspCI CAANNNNNGTGG 4 cut(s) 916, 919, 951, 954
CviAII CATG 5 cut(s) 253, 377, 499, 692, 862
CviQI GTAC 2 cut(s) 388, 837
DdeI CTNAG 1 cut(s) 947
DpnI GATC 4 cut(s) 74, 467, 912, 996
DpnII GATC 4 cut(s) 72, 465, 910, 994
EaeI YGGCCR 2 cut(s) 223, 553
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
EciI GGCGGA 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 3 cut(s) 109, 600, 844
Eco57I CTGAAG 2 cut(s) 82, 471
Eco88I CYCGRG 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 443
FaeI CATG 5 cut(s) 256, 380, 502, 695, 865
FaiI YATR 6 cut(s) 8, 254, 378, 500, 693, 863
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FatI CATG 5 cut(s) 252, 376, 498, 691, 861
FauI CCCGC 6 cut(s) 88, 136, 376, 420, 566, 1008
FokI GGATG 4 cut(s) 143, 324, 754, 900
FriOI GRGCYC 1 cut(s) 443
FspBI CTAG 1 cut(s) 822
GlaI GCGC 6 cut(s) 12, 119, 301, 674, 773, 790
HaeII RGCGCY 3 cut(s) 14, 121, 792
HaeIII GGCC 3 cut(s) 225, 555, 577
HapII CCGG 6 cut(s) 70, 341, 356, 519, 570, 598
HhaI GCGC 6 cut(s) 13, 120, 302, 675, 774, 791
Hin1II CATG 5 cut(s) 256, 380, 502, 695, 865
Hin6I GCGC 6 cut(s) 11, 118, 300, 673, 772, 789
HinP1I GCGC 6 cut(s) 11, 118, 300, 673, 772, 789
HinfI GANTC 3 cut(s) 714, 943, 967
HpaII CCGG 6 cut(s) 70, 341, 356, 519, 570, 598
HphI GGTGA 3 cut(s) 172, 962, 989
Hpy188I TCNGA 5 cut(s) 66, 529, 713, 948, 960
Hpy188III TCNNGA 4 cut(s) 199, 430, 598, 1038
Hpy99I CGWCG 8 cut(s) 176, 179, 239, 680, 779, 905, 908, 911
HpyAV CCTTC 6 cut(s) 24, 106, 267, 495, 616, 772
HpyCH4III ACNGT 6 cut(s) 239, 836, 869, 935, 1007, 1019
HpyCH4V TGCA 3 cut(s) 667, 702, 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 222, 306, 780, 786
HpyF3I CTNAG 1 cut(s) 947
Hsp92II CATG 5 cut(s) 256, 380, 502, 695, 865
HspAI GCGC 6 cut(s) 11, 118, 300, 673, 772, 789
Kpn2I TCCGGA 1 cut(s) 597
Kzo9I GATC 4 cut(s) 72, 465, 910, 994
LmnI GCTCC 4 cut(s) 370, 438, 496, 616
Lsp1109I GCAGC 3 cut(s) 165, 489, 792
LweI GCATC 4 cut(s) 165, 302, 654, 732
MaeI CTAG 1 cut(s) 822
MaeIII GTNAC 4 cut(s) 163, 178, 869, 1009
MalI GATC 4 cut(s) 74, 467, 912, 996
MboI GATC 4 cut(s) 72, 465, 910, 994
MboII GAAGA 4 cut(s) 673, 905, 1023, 1026
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 3 cut(s) 322, 445, 558
MlyI GAGTC 2 cut(s) 723, 952
MmeI TCCRAC 1 cut(s) 89
MroI TCCGGA 1 cut(s) 597
MroXI GAANNNNTTC 2 cut(s) 593, 761
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 783
MspI CCGG 6 cut(s) 70, 341, 356, 519, 570, 598
MspR9I CCNGG 4 cut(s) 70, 520, 570, 614
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 2 cut(s) 675, 774
MwoI GCNNNNNNNGC 5 cut(s) 85, 222, 306, 780, 786
NciI CCSGG 3 cut(s) 70, 520, 570
NdeII GATC 4 cut(s) 72, 465, 910, 994
NlaIII CATG 5 cut(s) 256, 380, 502, 695, 865
NlaIV GGNNCC 4 cut(s) 74, 110, 440, 596
NmuCI GTSAC 3 cut(s) 163, 178, 1009
NspI RCATGY 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 333
PcsI WCGNNNNNNNCGW 5 cut(s) 243, 684, 771, 897, 906
PctI GAATGC 1 cut(s) 197
PdmI GAANNNNTTC 2 cut(s) 593, 761
PfeI GAWTC 1 cut(s) 967
PflFI GACNNNGTC 1 cut(s) 686
PleI GAGTC 2 cut(s) 722, 951
PpsI GAGTC 2 cut(s) 722, 951
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 4 cut(s) 74, 110, 440, 596
PspPI GGNCC 4 cut(s) 109, 575, 600, 844
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 686
RsaI GTAC 2 cut(s) 389, 838
RsaNI GTAC 2 cut(s) 388, 837
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 804
Sau3AI GATC 4 cut(s) 72, 465, 910, 994
Sau96I GGNCC 4 cut(s) 109, 575, 600, 844
ScaI AGTACT 1 cut(s) 838
SchI GAGTC 2 cut(s) 723, 952
ScrFI CCNGG 4 cut(s) 70, 520, 570, 614
SduI GDGCHC 1 cut(s) 443
SetI ASST 8 cut(s) 185, 218, 290, 454, 493, 738, 764, 987
SfaNI GCATC 4 cut(s) 165, 302, 654, 732
SinI GGWCC 3 cut(s) 109, 600, 844
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 113, 197, 731
SmoI CTYRAG 3 cut(s) 113, 197, 731
Sse9I AATT 3 cut(s) 322, 445, 558
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 822
StyD4I CCNGG 4 cut(s) 68, 518, 568, 612
TaaI ACNGT 6 cut(s) 239, 836, 869, 935, 1007, 1019
TaqI TCGA 3 cut(s) 234, 384, 717
TasI AATT 3 cut(s) 322, 445, 558
TatI WGTACW 1 cut(s) 836
TfiI GAWTC 1 cut(s) 967
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TseFI GTSAC 3 cut(s) 163, 178, 1009
TseI GCWGC 3 cut(s) 153, 502, 780
Tsp45I GTSAC 3 cut(s) 163, 178, 1009
TspDTI ATGAA 2 cut(s) 241, 878
Tth111I GACNNNGTC 1 cut(s) 686
VpaK11BI GGWCC 3 cut(s) 109, 600, 844
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmnI GAANNNNTTC 2 cut(s) 593, 761
XspI CTAG 1 cut(s) 822
ZrmI AGTACT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.