Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015078

Physical Location & Seq

Genomic Coordinates Reverse (-)

4937465 .. 4939207

Gene Structure 1743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATGTAATAGCTACTACAACTACTATAGTATCCGACTTGGATTCACGACAACCCGAAATCGAAGCTCCGATCCGGATCCAGCCCGCGAAGCCTATTTCTTTCTCAAACGGCAAACGCTGCCACCACCATCATCTTGCATCTGAAGCGGTTGCGGTTGCGACTTATAAAGAATGTCTAAAGAATCACGCAGCAGGTATCGGCGGTCACGCTTTAGACGGATGCGGCGAGTTTATGCCGTCACCGTCGTTTAACTCCAATGACCCCGCTTCACTAACGTGCGCTGCTTGTGGTTGCCACCGTAACTTCCACCGCCGTGAGGAGGATCCATCTTCTCTCTCTGCCATCGTCCCTGCGATCGAATTTCGACCTCACAACCGTCACCAGCTTCCTCCACCGCCTCCTCCTCATCTGGCGGGGATTCGTAGTCCAGACGACGATGATTCAGCTTCTCCACCGCCGATCTCGTCTTCTTACATGCTTCTCGCACTCTCTGGAGGAAGAGGAGGAGCTAACACGGCGGTTCCAATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTCAGTATCAGAAGGAGAAGATGTTCGAGTTCTCGGAGAGAGTTGGGTGGAGGATGCCGAAAGCTGATGACGTGGTGGTTAAGGAGTTTTGTCGGGAGATTGGAGTTGATAAAAGCGTTTTCAAAGTGTGGATGCATAACAACAAGATTTCAGGACGCAGCGGCGCTAGAAGAGCTAACGGCGGAGTAGTAGTAGGAGGAGTAGGAGATAGTCGTCAGAGTGTTGTTCCGACAAATGGGTCGTTTTCTTCGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

271

Amino Acids

29.38

Weight (kDa)

9.01

Isoelectric Point (pI)

71.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	55 - 108	5.4e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28920 AT5G15210
fragaria_vesca	FvH4_6g48610
malus_domestica	MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica	Prupe.3G267800_v2.0.a1
pyrus_communis	pycom111g04220 pycom17g04600
rosa_chinensis	RchiOBHm_Chr2g0168471
rosa_laevigata	RLG00000021783
rosa_multiflora	Rmu_sc0007066.1_g000014
rosa_roxburghii	Rroxscaffold_2G00082990
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603800 Rh2CG584800
rosa_wichuraiana	Rw2G050060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AasI	GACNNNNNNGTC	1 cut(s)	796
Acc36I	ACCTGC	1 cut(s)	185
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	75
AclI	AACGTT	1 cut(s)	541
AclWI	GGATC	5 cut(s)	67, 73, 86, 320, 333
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	319, 322, 794
AgsI	TTSAA	1 cut(s)	682
AjiI	CACGTC	2 cut(s)	631, 813
AleI	CACNNNNGTG	2 cut(s)	277, 315
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	7 cut(s)	14, 68, 388, 449, 512, 623, 734
AluI	AGCT	7 cut(s)	14, 68, 388, 449, 512, 623, 734
AlwI	GGATC	5 cut(s)	67, 73, 86, 320, 333
Aor13HI	TCCGGA	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	120, 191, 284, 717
ApoI	RAATTY	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	284, 725
AsuHPI	GGTGA	2 cut(s)	234, 374
BaeI	ACNNNNGTAYC	2 cut(s)	15, 48
BamHI	GGATCC	2 cut(s)	78, 325
BbsI	GAAGAC	1 cut(s)	462
BbvI	GCAGC	4 cut(s)	107, 203, 271, 729
BccI	CCATC	3 cut(s)	138, 337, 353
BceAI	ACGGC	5 cut(s)	127, 223, 300, 534, 754
BciVI	GTATCC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	534, 726
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	6 cut(s)	121, 192, 226, 285, 718, 721
BlsI	GCNGC	6 cut(s)	122, 193, 227, 286, 719, 722
BmgBI	CACGTC	2 cut(s)	631, 813
BmiI	GGNNCC	3 cut(s)	80, 327, 525
BmsI	GCATC	4 cut(s)	149, 212, 603, 681
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	4 cut(s)	566, 596, 735, 765
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 322, 794
Bse8I	GATNNNNATC	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	75
BseGI	GGATG	4 cut(s)	10, 227, 618, 696
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	319, 322, 794
BseRI	GAGGAG	6 cut(s)	335, 393, 396, 519, 522, 771
BseXI	GCAGC	4 cut(s)	107, 203, 271, 729
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	319, 322, 794
BsmFI	GGGAC	1 cut(s)	335
Bsp13I	TCCGGA	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	72, 78, 325, 357, 462
BspEI	TCCGGA	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	80, 327, 525
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	5 cut(s)	67, 73, 86, 320, 333
BspQI	GCTCTTC	1 cut(s)	724
BssMI	GATC	5 cut(s)	72, 78, 325, 357, 462
Bst4CI	ACNGT	3 cut(s)	246, 302, 380
Bst6I	CTCTTC	2 cut(s)	496, 724
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	10, 227, 618, 696
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	284, 725
BstKTI	GATC	5 cut(s)	75, 81, 328, 360, 465
BstMBI	GATC	5 cut(s)	72, 78, 325, 357, 462
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 120, 146, 518, 731
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	107, 203, 271, 729
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	78, 325
BstYI	RGATCY	2 cut(s)	78, 325
BsuI	GTATCC	1 cut(s)	43
BtrI	CACGTC	2 cut(s)	631, 813
BtsCI	GGATG	4 cut(s)	10, 227, 618, 696
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	284, 725
CseI	GACGC	1 cut(s)	723
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	9 cut(s)	14, 68, 85, 94, 388, 449, 512, 623, 734
CviKI_1	RGCY	9 cut(s)	14, 68, 85, 94, 388, 449, 512, 623, 734
DpnI	GATC	5 cut(s)	74, 80, 327, 359, 464
DpnII	GATC	5 cut(s)	72, 78, 325, 357, 462
DrdI	GACNNNNNNGTC	1 cut(s)	796
DseDI	GACNNNNNNGTC	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	496, 724
EarI	CTCTTC	2 cut(s)	496, 724
EciI	GGCGGA	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	696
FaeI	CATG	1 cut(s)	481
FaiI	YATR	5 cut(s)	29, 168, 236, 479, 696
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	477
FauI	CCCGC	3 cut(s)	94, 274, 409
Fnu4HI	GCNGC	6 cut(s)	121, 192, 226, 285, 718, 721
FokI	GGATG	4 cut(s)	17, 234, 625, 703
Fsp4HI	GCNGC	6 cut(s)	121, 192, 226, 285, 718, 721
FspBI	CTAG	2 cut(s)	534, 726
GlaI	GCGC	2 cut(s)	283, 724
GluI	GCNGC	6 cut(s)	121, 192, 226, 285, 718, 721
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	726
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	723
HhaI	GCGC	2 cut(s)	284, 725
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	282, 723
HinP1I	GCGC	2 cut(s)	282, 723
HinfI	GANTC	4 cut(s)	44, 184, 421, 443
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	2 cut(s)	234, 374
Hpy188I	TCNGA	7 cut(s)	37, 72, 145, 570, 595, 777, 789
Hpy188III	TCNNGA	6 cut(s)	48, 76, 431, 495, 653, 711
Hpy99I	CGWCG	3 cut(s)	250, 440, 814
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	3 cut(s)	246, 302, 380
HpyCH4IV	ACGT	4 cut(s)	278, 541, 630, 812
HpyCH4V	TGCA	2 cut(s)	140, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 120, 146, 518, 731
HpySE526I	ACGT	4 cut(s)	278, 541, 630, 812
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	282, 723
Kpn2I	TCCGGA	1 cut(s)	75
Kzo9I	GATC	5 cut(s)	72, 78, 325, 357, 462
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	2 cut(s)	73, 509
LpnPI	CCDG	9 cut(s)	89, 95, 180, 366, 398, 398, 444, 480, 696
Lsp1109I	GCAGC	4 cut(s)	107, 203, 271, 729
LweI	GCATC	4 cut(s)	149, 212, 603, 681
MaeI	CTAG	2 cut(s)	534, 726
MaeII	ACGT	4 cut(s)	278, 541, 630, 812
MaeIII	GTNAC	4 cut(s)	206, 240, 302, 380
MalI	GATC	5 cut(s)	74, 80, 327, 359, 464
MboI	GATC	5 cut(s)	72, 78, 325, 357, 462
MboII	GAAGA	6 cut(s)	324, 462, 513, 589, 741, 798
MflI	RGATCY	2 cut(s)	78, 325
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	60, 812
Mph1103I	ATGCAT	1 cut(s)	696
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	252, 639
MslI	CAYNNNNRTG	2 cut(s)	277, 315
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	91, 120, 146, 518, 731
NdeII	GATC	5 cut(s)	72, 78, 325, 357, 462
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	3 cut(s)	80, 327, 525
NmuCI	GTSAC	3 cut(s)	206, 240, 380
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	481
OliI	CACNNNNGTG	2 cut(s)	277, 315
PciSI	GCTCTTC	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 806
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	44, 184, 421, 443
PkrI	GCNGC	6 cut(s)	122, 193, 227, 286, 719, 722
Ple19I	CGATCG	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	80, 327, 525
PsuI	RGATCY	2 cut(s)	78, 325
PvuI	CGATCG	1 cut(s)	360
RseI	CAYNNNNRTG	2 cut(s)	277, 315
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	2 cut(s)	252, 639
SatI	GCNGC	6 cut(s)	121, 192, 226, 285, 718, 721
Sau3AI	GATC	5 cut(s)	72, 78, 325, 357, 462
SfaNI	GCATC	4 cut(s)	149, 212, 603, 681
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	277, 315
Sse9I	AATT	1 cut(s)	362
SspMI	CTAG	2 cut(s)	534, 726
TaaI	ACNGT	3 cut(s)	246, 302, 380
TaiI	ACGT	4 cut(s)	281, 544, 633, 815
TaqI	TCGA	5 cut(s)	63, 360, 367, 585, 809
TasI	AATT	1 cut(s)	362
TauI	GCSGC	2 cut(s)	228, 723
TfiI	GAWTC	4 cut(s)	44, 184, 421, 443
Tru1I	TTAA	2 cut(s)	252, 639
Tru9I	TTAA	2 cut(s)	252, 639
TseFI	GTSAC	3 cut(s)	206, 240, 380
TseI	GCWGC	4 cut(s)	120, 191, 284, 717
Tsp45I	GTSAC	3 cut(s)	206, 240, 380
TspGWI	ACGGA	1 cut(s)	234
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	2 cut(s)	534, 726
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.