Rw2G050060

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015078
Physical Location & Seq
Forward (+)
77632513 .. 77634140
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050060.1

Sequence Viewer

Length: 1059 bp
ATGGATATAGCGCCTTCCATCACCACCACGACCACGACCACCACCAGCACCAAATCCCCCGAAGCCGACAGCGACACTCCGACCCGGATCCAGCCCGCCAAGCCCATCTCCTTCAGCAACGGGGTCCTCAAGCGCCACCACCCCGCCCACCACCACAACCACAACAGCAGCATCCCCGTCACTCCCGTCGTCGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACCGACCCCACCTCGCTAAAATGCGCTGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCAGTTGCTCCCGCAACTCATGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCCCCTCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTGCTGGCTCTCTCCACCGGGATTTCTGACAACCCGAACAACCACCACGGCGGCCAAATTGTGTCCCCCGGCGGGCCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCCAGTTTGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAGGTGTGGATGCACAACAACAAGAACACCTTCGCCAAGCGCGACGGCAGCGGTGGCGCTGGTAATGGCATTAACACAACCGCCGCCGCGAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAGCAACGAAGAGGACGAGGACGACGATCATCCCAACAACAACAACAACAACGGTGGTGGGAGTCTGAGCAACATTCCGAACCCGATTCACCATCACTACCAGCTTGGCGGCGATCACCCGCACGGTGTGACTAACGGTGGGTCGTCATCTTCTTCTTGA

Protein Analysis

352

Amino Acids

38.05

Weight (kDa)

6.97

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 65 - 119 2.4e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28920 AT5G15210
fragaria_vesca FvH4_6g48610
malus_domestica MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica Prupe.3G267800_v2.0.a1
pyrus_communis pycom111g04220 pycom17g04600
rosa_chinensis RchiOBHm_Chr2g0168471
rosa_laevigata RLG00000021783
rosa_multiflora Rmu_sc0007066.1_g000014
rosa_roxburghii Rroxscaffold_2G00082990
rosa_rugosa Rorug02G0533800
rosa_samantha Rh2AG603800 Rh2CG584800
rosa_wichuraiana Rw2G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 690, 789, 836
AccIII TCCGGA 1 cut(s) 612
AclWI GGATC 2 cut(s) 82, 95
AcoI YGGCCR 2 cut(s) 238, 568
AcuI CTGAAG 2 cut(s) 97, 486
AdeI CACNNNGTG 1 cut(s) 1027
AfaI GTAC 2 cut(s) 404, 853
AfiI CCNNNNNNNGG 4 cut(s) 355, 443, 588, 658
AjnI CCWGG 1 cut(s) 627
AleI CACNNNNGTG 1 cut(s) 348
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 4 cut(s) 231, 467, 506, 1003
AluI AGCT 4 cut(s) 231, 467, 506, 1003
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 82, 95
Aor13HI TCCGGA 1 cut(s) 612
AoxI GGCC 3 cut(s) 238, 568, 590
ApeKI GCWGC 4 cut(s) 168, 317, 517, 795
ArsI GACNNNNNNTTYG 2 cut(s) 714, 746
Asp700I GAANNNNTTC 2 cut(s) 608, 776
AspLEI GCGC 6 cut(s) 13, 135, 317, 690, 789, 806
AspS9I GGNCC 4 cut(s) 124, 590, 615, 859
AsuC2I CCSGG 3 cut(s) 85, 535, 585
AsuHPI GGTGA 4 cut(s) 13, 187, 980, 1007
AvaII GGWCC 3 cut(s) 124, 615, 859
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 180, 304, 504, 807
BccI CCATC 3 cut(s) 26, 113, 999
BceAI ACGGC 3 cut(s) 333, 580, 808
BcgI CGANNNNNNTGC 2 cut(s) 706, 740
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 3 cut(s) 85, 535, 585
BcoDI GTCTC 1 cut(s) 832
BfoI RGCGCY 3 cut(s) 14, 136, 807
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 4 cut(s) 85, 535, 585, 629
Bme18I GGWCC 3 cut(s) 124, 615, 859
BmgT120I GGNCC 4 cut(s) 124, 590, 615, 859
BmiI GGNNCC 4 cut(s) 89, 125, 455, 611
BmrFI CCNGG 4 cut(s) 85, 535, 585, 629
BmsI GCATC 4 cut(s) 180, 317, 669, 747
BpuEI CTTGAG 3 cut(s) 113, 197, 731
BpuMI CCSGG 3 cut(s) 85, 535, 585
BsaJI CCNNGG 2 cut(s) 562, 583
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 443, 588, 658
Bse1I ACTGG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 612
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 562, 583
BseGI GGATG 4 cut(s) 171, 332, 762, 928
BseLI CCNNNNNNNGG 4 cut(s) 355, 443, 588, 658
BseMII CTCAG 1 cut(s) 956
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 475, 478
BseXI GCAGC 4 cut(s) 180, 304, 504, 807
Bsh1236I CGCG 3 cut(s) 690, 789, 836
BshFI GGCC 3 cut(s) 240, 570, 592
BsiSI CCGG 6 cut(s) 85, 356, 371, 534, 585, 613
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 4 cut(s) 355, 443, 588, 658
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 240, 570, 592
Bsp1286I GDGCHC 1 cut(s) 458
Bsp13I TCCGGA 1 cut(s) 612
Bsp143I GATC 4 cut(s) 87, 480, 925, 1012
BspANI GGCC 3 cut(s) 240, 570, 592
BspCNI CTCAG 1 cut(s) 957
BspEI TCCGGA 1 cut(s) 612
BspFNI CGCG 3 cut(s) 690, 789, 836
BspLI GGNNCC 4 cut(s) 89, 125, 455, 611
BspPI GGATC 2 cut(s) 82, 95
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 2 cut(s) 562, 583
BssMI GATC 4 cut(s) 87, 480, 925, 1012
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 6 cut(s) 254, 851, 884, 953, 1025, 1037
Bst6I CTCTTC 1 cut(s) 903
BstC8I GCNNGC 5 cut(s) 96, 229, 322, 522, 590
BstDEI CTNAG 1 cut(s) 965
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 4 cut(s) 171, 332, 762, 928
BstFNI CGCG 3 cut(s) 690, 789, 836
BstH2I RGCGCY 3 cut(s) 14, 136, 807
BstHHI GCGC 6 cut(s) 13, 135, 317, 690, 789, 806
BstKTI GATC 4 cut(s) 90, 483, 928, 1015
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 4 cut(s) 87, 480, 925, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 100, 237, 321, 795, 801
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 4 cut(s) 83, 533, 583, 627
BstUI CGCG 3 cut(s) 690, 789, 836
BstV1I GCAGC 4 cut(s) 180, 304, 504, 807
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 3 cut(s) 240, 570, 592
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 4 cut(s) 171, 332, 762, 928
Cac8I GCNNGC 5 cut(s) 96, 229, 322, 522, 590
CfoI GCGC 6 cut(s) 13, 135, 317, 690, 789, 806
Cfr13I GGNCC 4 cut(s) 124, 590, 615, 859
Csp6I GTAC 2 cut(s) 403, 852
CspCI CAANNNNNGTGG 4 cut(s) 934, 937, 969, 972
CviAII CATG 5 cut(s) 268, 392, 514, 707, 877
CviQI GTAC 2 cut(s) 403, 852
DdeI CTNAG 1 cut(s) 965
DpnI GATC 4 cut(s) 89, 482, 927, 1014
DpnII GATC 4 cut(s) 87, 480, 925, 1012
DraIII CACNNNGTG 1 cut(s) 1027
EaeI YGGCCR 2 cut(s) 238, 568
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
EciI GGCGGA 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 458
Eco47I GGWCC 3 cut(s) 124, 615, 859
Eco57I CTGAAG 2 cut(s) 97, 486
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 5 cut(s) 271, 395, 517, 710, 880
FaiI YATR 6 cut(s) 8, 269, 393, 515, 708, 878
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FaqI GGGAC 1 cut(s) 565
FatI CATG 5 cut(s) 267, 391, 513, 706, 876
FauI CCCGC 6 cut(s) 103, 151, 391, 435, 581, 1026
FokI GGATG 4 cut(s) 158, 339, 769, 915
FriOI GRGCYC 1 cut(s) 458
GlaI GCGC 6 cut(s) 12, 134, 316, 689, 788, 805
HaeII RGCGCY 3 cut(s) 14, 136, 807
HaeIII GGCC 3 cut(s) 240, 570, 592
HapII CCGG 6 cut(s) 85, 356, 371, 534, 585, 613
HhaI GCGC 6 cut(s) 13, 135, 317, 690, 789, 806
Hin1II CATG 5 cut(s) 271, 395, 517, 710, 880
Hin6I GCGC 6 cut(s) 11, 133, 315, 688, 787, 804
HinP1I GCGC 6 cut(s) 11, 133, 315, 688, 787, 804
HinfI GANTC 3 cut(s) 729, 961, 985
HpaII CCGG 6 cut(s) 85, 356, 371, 534, 585, 613
HphI GGTGA 4 cut(s) 13, 187, 980, 1007
Hpy188I TCNGA 5 cut(s) 81, 544, 728, 966, 978
Hpy188III TCNNGA 4 cut(s) 214, 445, 613, 1056
Hpy99I CGWCG 6 cut(s) 191, 194, 254, 695, 794, 926
HpyAV CCTTC 6 cut(s) 24, 121, 282, 510, 631, 787
HpyCH4III ACNGT 6 cut(s) 254, 851, 884, 953, 1025, 1037
HpyCH4V TGCA 3 cut(s) 682, 717, 760
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 237, 321, 795, 801
HpyF3I CTNAG 1 cut(s) 965
Hsp92II CATG 5 cut(s) 271, 395, 517, 710, 880
HspAI GCGC 6 cut(s) 11, 133, 315, 688, 787, 804
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 4 cut(s) 87, 480, 925, 1012
LmnI GCTCC 4 cut(s) 385, 453, 511, 631
Lsp1109I GCAGC 4 cut(s) 180, 304, 504, 807
LweI GCATC 4 cut(s) 180, 317, 669, 747
MaeIII GTNAC 4 cut(s) 178, 193, 884, 1027
MalI GATC 4 cut(s) 89, 482, 927, 1014
MboI GATC 4 cut(s) 87, 480, 925, 1012
MboII GAAGA 4 cut(s) 688, 920, 1041, 1044
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 337, 460, 573
MlyI GAGTC 2 cut(s) 738, 970
MmeI TCCRAC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 612
MroXI GAANNNNTTC 2 cut(s) 608, 776
MseI TTAA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 6 cut(s) 85, 356, 371, 534, 585, 613
MspR9I CCNGG 4 cut(s) 85, 535, 585, 629
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 3 cut(s) 690, 789, 836
MwoI GCNNNNNNNGC 5 cut(s) 100, 237, 321, 795, 801
NciI CCSGG 3 cut(s) 85, 535, 585
NdeII GATC 4 cut(s) 87, 480, 925, 1012
NlaIII CATG 5 cut(s) 271, 395, 517, 710, 880
NlaIV GGNNCC 4 cut(s) 89, 125, 455, 611
NmuCI GTSAC 3 cut(s) 178, 193, 1027
NspI RCATGY 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 348
PcsI WCGNNNNNNNCGW 5 cut(s) 258, 699, 786, 912, 921
PctI GAATGC 1 cut(s) 212
PdmI GAANNNNTTC 2 cut(s) 608, 776
PfeI GAWTC 1 cut(s) 985
PflFI GACNNNGTC 1 cut(s) 701
PleI GAGTC 2 cut(s) 737, 969
PpsI GAGTC 2 cut(s) 737, 969
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 4 cut(s) 89, 125, 455, 611
PspPI GGNCC 4 cut(s) 124, 590, 615, 859
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 701
RsaI GTAC 2 cut(s) 404, 853
RsaNI GTAC 2 cut(s) 403, 852
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 1 cut(s) 819
Sau3AI GATC 4 cut(s) 87, 480, 925, 1012
Sau96I GGNCC 4 cut(s) 124, 590, 615, 859
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 738, 970
ScrFI CCNGG 4 cut(s) 85, 535, 585, 629
SduI GDGCHC 1 cut(s) 458
SetI ASST 8 cut(s) 200, 233, 305, 469, 508, 753, 779, 1005
SfaNI GCATC 4 cut(s) 180, 317, 669, 747
SinI GGWCC 3 cut(s) 124, 615, 859
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 3 cut(s) 128, 212, 746
SmoI CTYRAG 3 cut(s) 128, 212, 746
Sse9I AATT 3 cut(s) 337, 460, 573
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 4 cut(s) 83, 533, 583, 627
TaaI ACNGT 6 cut(s) 254, 851, 884, 953, 1025, 1037
TaqI TCGA 3 cut(s) 249, 399, 732
TasI AATT 3 cut(s) 337, 460, 573
TatI WGTACW 1 cut(s) 851
TauI GCSGC 9 cut(s) 227, 240, 261, 433, 436, 570, 833, 836, 1011
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TseFI GTSAC 3 cut(s) 178, 193, 1027
TseI GCWGC 4 cut(s) 168, 317, 517, 795
Tsp45I GTSAC 3 cut(s) 178, 193, 1027
TspDTI ATGAA 2 cut(s) 256, 893
Tth111I GACNNNGTC 1 cut(s) 701
VpaK11BI GGWCC 3 cut(s) 124, 615, 859
XceI RCATGY 1 cut(s) 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmnI GAANNNNTTC 2 cut(s) 608, 776
ZrmI AGTACT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.