RchiOBHm_Chr2g0168471

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015078
Physical Location & Seq
Forward (+)
82854849 .. 82856428
1580 bp
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UTR
Exon/CDS
Intron
PRQ53615

Sequence Viewer

Length: 1062 bp
ATGGATATAGCGCCTTCCATCACCACCACGACCACGACCACCACCAGCACCAAATCCCCCGAAGCCGACAGCGACACTCCGACCCGGATCCAGCCCGCCAAGCCCATCTCCTTCAGCAACGGGGTCCTCAAGCGCCACCACCCCGCCCACCACCACCACCACCACAACAGCAGCATCCCCGTCACTCCCGTAGTCGTCACCTACAAAGAATGCCTCAAGAACCACGCCGCCAGCTTGGGCGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCCCAACCGACCCCACCTCGCTAAAATGCGCAGCCTGCGGATGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAATATTCCGGCAGTCGCCCCCGCAACTCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCGCCGCCGCCACTCATCGGGAACAGGAGCCCCAATTCAGCTTCCCCTCCGCCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTGCTGGCTCTCTCCACCGGGATTTCTGACAACCCGAACAACCACCACGGCGGCCAAATTGTGTCCCCCGGCGGGCCTAATGCGAGGAAGCGGTTCCGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCCAGTTTGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGCGACGAGGACATCGTCCATGAGTTCTGCAACGAAATCGGAGTCGATAAAGGAGTTCTCAAGGTGTGGATGCACAACAACAAGAACACCTTCGCCAAGCGCGACGGCAGCGGTGGCGCTGGTAATGGCATTAACACAACCGCCGCCGCGAGACTTCCCAACAGTACTTTGGACCAAATCCACAACAACATGAACGGTAACAACAATAACACCAGCAACGAAGAGGACGAGGACGACGATCATCCCAACAACAACAACAACAACGGTGGTGGGAGTCTGAGCAACATTCCGAACCCGATTCACCATCACTACCAGCTTGGCGGCGATCACCCGCACGGTGTCACTAACGGTGGGTCGTCATCTTCTTCTTGA

Protein Analysis

353

Amino Acids

38.21

Weight (kDa)

7.0

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 66 - 120 2.4e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28920 AT5G15210
fragaria_vesca FvH4_6g48610
malus_domestica MD09G1051200.v1.1 MD17G1051300.v1.1
prunus_persica Prupe.3G267800_v2.0.a1
pyrus_communis pycom111g04220 pycom17g04600
rosa_chinensis RchiOBHm_Chr2g0168471
rosa_laevigata RLG00000021783
rosa_multiflora Rmu_sc0007066.1_g000014
rosa_roxburghii Rroxscaffold_2G00082990
rosa_rugosa Rorug02G0533800
rosa_samantha Rh2AG603800 Rh2CG584800
rosa_wichuraiana Rw2G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 319
AccII CGCG 3 cut(s) 693, 792, 839
AccIII TCCGGA 1 cut(s) 615
AclWI GGATC 2 cut(s) 82, 95
AcoI YGGCCR 2 cut(s) 241, 571
AcuI CTGAAG 2 cut(s) 97, 489
AfaI GTAC 2 cut(s) 407, 856
AfiI CCNNNNNNNGG 4 cut(s) 358, 446, 591, 661
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 630
AleI CACNNNNGTG 1 cut(s) 351
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
AluBI AGCT 4 cut(s) 234, 470, 509, 1006
AluI AGCT 4 cut(s) 234, 470, 509, 1006
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 2 cut(s) 82, 95
Aor13HI TCCGGA 1 cut(s) 615
AoxI GGCC 3 cut(s) 241, 571, 593
ApeKI GCWGC 4 cut(s) 171, 320, 520, 798
ArsI GACNNNNNNTTYG 2 cut(s) 717, 749
Asp700I GAANNNNTTC 2 cut(s) 611, 779
AspLEI GCGC 6 cut(s) 13, 135, 320, 693, 792, 809
AspS9I GGNCC 4 cut(s) 124, 593, 618, 862
AsuC2I CCSGG 3 cut(s) 85, 538, 588
AsuHPI GGTGA 4 cut(s) 13, 190, 983, 1010
AvaII GGWCC 3 cut(s) 124, 618, 862
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 461
BbvI GCAGC 4 cut(s) 183, 332, 507, 810
BccI CCATC 3 cut(s) 26, 113, 1002
BceAI ACGGC 3 cut(s) 336, 583, 811
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 3 cut(s) 85, 538, 588
BcoDI GTCTC 1 cut(s) 835
BfoI RGCGCY 3 cut(s) 14, 136, 810
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 4 cut(s) 85, 538, 588, 632
Bme18I GGWCC 3 cut(s) 124, 618, 862
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 4 cut(s) 124, 593, 618, 862
BmiI GGNNCC 4 cut(s) 89, 125, 458, 614
BmrFI CCNGG 4 cut(s) 85, 538, 588, 632
BmsI GCATC 4 cut(s) 183, 320, 672, 750
BpuEI CTTGAG 3 cut(s) 113, 200, 734
BpuMI CCSGG 3 cut(s) 85, 538, 588
BsaJI CCNNGG 2 cut(s) 565, 586
BsaWI WCCGGW 1 cut(s) 615
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 446, 591, 661
Bse1I ACTGG 1 cut(s) 655
BseAI TCCGGA 1 cut(s) 615
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 2 cut(s) 565, 586
BseGI GGATG 4 cut(s) 174, 335, 765, 931
BseLI CCNNNNNNNGG 4 cut(s) 358, 446, 591, 661
BseMII CTCAG 1 cut(s) 959
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 2 cut(s) 478, 481
BseXI GCAGC 4 cut(s) 183, 332, 507, 810
Bsh1236I CGCG 3 cut(s) 693, 792, 839
BshFI GGCC 3 cut(s) 243, 573, 595
BsiSI CCGG 6 cut(s) 85, 359, 374, 537, 588, 616
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 4 cut(s) 358, 446, 591, 661
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 3 cut(s) 243, 573, 595
Bsp1286I GDGCHC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 615
Bsp143I GATC 4 cut(s) 87, 483, 928, 1015
BspANI GGCC 3 cut(s) 243, 573, 595
BspCNI CTCAG 1 cut(s) 960
BspEI TCCGGA 1 cut(s) 615
BspFNI CGCG 3 cut(s) 693, 792, 839
BspLI GGNNCC 4 cut(s) 89, 125, 458, 614
BspPI GGATC 2 cut(s) 82, 95
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 2 cut(s) 565, 586
BssMI GATC 4 cut(s) 87, 483, 928, 1015
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 6 cut(s) 257, 854, 887, 956, 1028, 1040
Bst6I CTCTTC 1 cut(s) 906
BstC8I GCNNGC 5 cut(s) 96, 232, 325, 525, 593
BstDEI CTNAG 1 cut(s) 968
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 4 cut(s) 174, 335, 765, 931
BstFNI CGCG 3 cut(s) 693, 792, 839
BstH2I RGCGCY 3 cut(s) 14, 136, 810
BstHHI GCGC 6 cut(s) 13, 135, 320, 693, 792, 809
BstKTI GATC 4 cut(s) 90, 486, 931, 1018
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 4 cut(s) 87, 483, 928, 1015
BstMWI GCNNNNNNNGC 5 cut(s) 100, 240, 324, 798, 804
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 4 cut(s) 83, 536, 586, 630
BstUI CGCG 3 cut(s) 693, 792, 839
BstV1I GCAGC 4 cut(s) 183, 332, 507, 810
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 3 cut(s) 243, 573, 595
BtgI CCRYGG 1 cut(s) 565
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 4 cut(s) 174, 335, 765, 931
Cac8I GCNNGC 5 cut(s) 96, 232, 325, 525, 593
CfoI GCGC 6 cut(s) 13, 135, 320, 693, 792, 809
Cfr13I GGNCC 4 cut(s) 124, 593, 618, 862
Csp6I GTAC 2 cut(s) 406, 855
CspCI CAANNNNNGTGG 4 cut(s) 937, 940, 972, 975
CviAII CATG 4 cut(s) 271, 517, 710, 880
CviQI GTAC 2 cut(s) 406, 855
DdeI CTNAG 1 cut(s) 968
DpnI GATC 4 cut(s) 89, 485, 930, 1017
DpnII GATC 4 cut(s) 87, 483, 928, 1015
EaeI YGGCCR 2 cut(s) 241, 571
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
EciI GGCGGA 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 3 cut(s) 124, 618, 862
Eco57I CTGAAG 2 cut(s) 97, 489
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 4 cut(s) 274, 520, 713, 883
FaiI YATR 5 cut(s) 8, 272, 518, 711, 881
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 1 cut(s) 568
FatI CATG 4 cut(s) 270, 516, 709, 879
FauI CCCGC 6 cut(s) 103, 151, 394, 438, 584, 1029
FokI GGATG 4 cut(s) 161, 342, 772, 918
FriOI GRGCYC 1 cut(s) 461
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 6 cut(s) 12, 134, 319, 692, 791, 808
HaeII RGCGCY 3 cut(s) 14, 136, 810
HaeIII GGCC 3 cut(s) 243, 573, 595
HapII CCGG 6 cut(s) 85, 359, 374, 537, 588, 616
HhaI GCGC 6 cut(s) 13, 135, 320, 693, 792, 809
Hin1II CATG 4 cut(s) 274, 520, 713, 883
Hin6I GCGC 6 cut(s) 11, 133, 318, 691, 790, 807
HinP1I GCGC 6 cut(s) 11, 133, 318, 691, 790, 807
HinfI GANTC 3 cut(s) 732, 964, 988
HpaII CCGG 6 cut(s) 85, 359, 374, 537, 588, 616
HphI GGTGA 4 cut(s) 13, 190, 983, 1010
Hpy188I TCNGA 5 cut(s) 81, 547, 731, 969, 981
Hpy188III TCNNGA 4 cut(s) 217, 448, 616, 1059
Hpy99I CGWCG 4 cut(s) 257, 698, 797, 929
HpyAV CCTTC 6 cut(s) 24, 121, 285, 513, 634, 790
HpyCH4III ACNGT 6 cut(s) 257, 854, 887, 956, 1028, 1040
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 685, 720, 763
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 240, 324, 798, 804
HpyF3I CTNAG 1 cut(s) 968
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 4 cut(s) 274, 520, 713, 883
HspAI GCGC 6 cut(s) 11, 133, 318, 691, 790, 807
Kpn2I TCCGGA 1 cut(s) 615
Kzo9I GATC 4 cut(s) 87, 483, 928, 1015
LmnI GCTCC 3 cut(s) 456, 514, 634
Lsp1109I GCAGC 4 cut(s) 183, 332, 507, 810
LweI GCATC 4 cut(s) 183, 320, 672, 750
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 4 cut(s) 181, 196, 887, 1030
MalI GATC 4 cut(s) 89, 485, 930, 1017
MboI GATC 4 cut(s) 87, 483, 928, 1015
MboII GAAGA 4 cut(s) 691, 923, 1044, 1047
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 3 cut(s) 340, 463, 576
MlyI GAGTC 2 cut(s) 741, 973
MmeI TCCRAC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 615
MroXI GAANNNNTTC 2 cut(s) 611, 779
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 801
MspI CCGG 6 cut(s) 85, 359, 374, 537, 588, 616
MspR9I CCNGG 4 cut(s) 85, 538, 588, 632
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 3 cut(s) 693, 792, 839
MwoI GCNNNNNNNGC 5 cut(s) 100, 240, 324, 798, 804
NciI CCSGG 3 cut(s) 85, 538, 588
NdeII GATC 4 cut(s) 87, 483, 928, 1015
NlaIII CATG 4 cut(s) 274, 520, 713, 883
NlaIV GGNNCC 4 cut(s) 89, 125, 458, 614
NmuCI GTSAC 3 cut(s) 181, 196, 1030
NsbI TGCGCA 1 cut(s) 319
NspI RCATGY 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 351
PcsI WCGNNNNNNNCGW 5 cut(s) 261, 702, 789, 915, 924
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 611, 779
PfeI GAWTC 1 cut(s) 988
PflFI GACNNNGTC 1 cut(s) 704
PleI GAGTC 2 cut(s) 740, 972
PpsI GAGTC 2 cut(s) 740, 972
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 4 cut(s) 89, 125, 458, 614
PspPI GGNCC 4 cut(s) 124, 593, 618, 862
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 704
RsaI GTAC 2 cut(s) 407, 856
RsaNI GTAC 2 cut(s) 406, 855
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 1 cut(s) 822
Sau3AI GATC 4 cut(s) 87, 483, 928, 1015
Sau96I GGNCC 4 cut(s) 124, 593, 618, 862
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 2 cut(s) 741, 973
ScrFI CCNGG 4 cut(s) 85, 538, 588, 632
SduI GDGCHC 1 cut(s) 461
SetI ASST 9 cut(s) 203, 236, 308, 399, 472, 511, 756, 782, 1008
SfaNI GCATC 4 cut(s) 183, 320, 672, 750
SinI GGWCC 3 cut(s) 124, 618, 862
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 3 cut(s) 128, 215, 749
SmoI CTYRAG 3 cut(s) 128, 215, 749
Sse9I AATT 3 cut(s) 340, 463, 576
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 4 cut(s) 83, 536, 586, 630
TaaI ACNGT 6 cut(s) 257, 854, 887, 956, 1028, 1040
TaiI ACGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 252, 402, 735
TasI AATT 3 cut(s) 340, 463, 576
TatI WGTACW 1 cut(s) 854
TauI GCSGC 9 cut(s) 230, 243, 264, 436, 439, 573, 836, 839, 1014
TfiI GAWTC 1 cut(s) 988
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TseFI GTSAC 3 cut(s) 181, 196, 1030
TseI GCWGC 4 cut(s) 171, 320, 520, 798
Tsp45I GTSAC 3 cut(s) 181, 196, 1030
TspDTI ATGAA 2 cut(s) 259, 896
Tth111I GACNNNGTC 1 cut(s) 704
VpaK11BI GGWCC 3 cut(s) 124, 618, 862
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 2 cut(s) 611, 779
ZrmI AGTACT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.