Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

11011262 .. 11013451

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAGTTTTAGTAATCTCGCTTCTCGTGGTTCATCTCCTAGCTTTTTCCGTCTGCGTTCAGGGCGGCTACCGTCGTGGCGGACACCATCCCGGCGGTCACATGGGACCTTGGATCAACGCTCATGCCACTTTTTACGGCGGCGGTGATGCTTCCGGCACTATGGGTGGAGCATGCGGGTACGGCAATCTGTATAGCCAAGGTTATGGACTGGAGACGGCAGCGCTGAGCACAGCGTTATTCGACCAAGGACTTAGTTGTGGCGCATGTTTTGAGCTGATGTGTGTCAACGATCCTCAATGGTGCATAAAAGGCCGATCCATTGTGGTCACTGCCACTAACTTTTGTCCTCCTGGTGGTGCATGCGACCCTCCCAACCACCATTTCGATCTTTCTCAGCCGATCTACGAGAAAATTGCTCTCTACAAATCCGGTATCATTCCCGTTATGTATAGAAGGGTTCGGTGCAAGAGAAGTGGTGGGATAAGGTTCACGATCAACGGCCACTCATACTTTAACTTGGTGTTGGTCACAAACGTGGGTGGAGCCGGGGACGTACACTCGGTCTCAATGAAAGGGTCGAGGACAAAATGGCAATTAATGTCGAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTATCTCAATGGTCAAAGTCTGTCGTTTGTTGTTACCACAAGTGATCGTCGAAGTGTCGTCTCTTTTAATGTTGCACCACCCACTTGGTCCTTTGGCCAGACCTACACCGGAGGGCAGTTTCGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044464 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0071944 GO:0080022 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.61

Weight (kDa)

9.2

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	42 - 157	4.1e-09	EXPB1-like domain 1
DPBB_1	PF03330	73 - 151	4.8e-23	Lytic transglycolase
Expansin_C	PF01357	162 - 239	2.9e-30	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	66, 81, 96, 141, 144, 177
AclWI	GGATC	3 cut(s)	122, 287, 312
AcoI	YGGCCR	2 cut(s)	502, 733
AfaI	GTAC	2 cut(s)	182, 558
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	44, 277
AluI	AGCT	2 cut(s)	44, 277
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	3 cut(s)	209, 571, 703
AlwI	GGATC	3 cut(s)	122, 287, 312
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	3 cut(s)	313, 502, 733
ApeKI	GCWGC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	226, 266
AspS9I	GGNCC	2 cut(s)	107, 726
AsuC2I	CCSGG	2 cut(s)	93, 550
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	107, 726
BalI	TGGCCA	1 cut(s)	735
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	4 cut(s)	154, 199, 234, 517
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	93, 550
BcoDI	GTCTC	3 cut(s)	209, 571, 703
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	3 cut(s)	67, 142, 222
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	3 cut(s)	68, 143, 223
Bme1390I	CCNGG	3 cut(s)	93, 354, 550
Bme18I	GGWCC	2 cut(s)	107, 726
BmgT120I	GGNCC	2 cut(s)	107, 726
BmiI	GGNNCC	2 cut(s)	108, 547
BmrFI	CCNGG	3 cut(s)	93, 354, 550
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	93, 550
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	4 cut(s)	110, 199, 247, 549
BsaWI	WCCGGW	2 cut(s)	431, 746
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	4 cut(s)	110, 199, 247, 549
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	218, 410
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	3 cut(s)	315, 504, 735
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	93, 156, 432, 549, 747
BslFI	GGGAC	2 cut(s)	120, 566
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	3 cut(s)	209, 571, 703
BsmBI	CGTCTC	2 cut(s)	209, 703
BsmFI	GGGAC	2 cut(s)	120, 566
BsnI	GGCC	3 cut(s)	315, 504, 735
Bso31I	GGTCTC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	6 cut(s)	66, 81, 96, 141, 144, 177
BspANI	GGCC	3 cut(s)	315, 504, 735
BspCNI	CTCAG	2 cut(s)	219, 409
BspLI	GGNNCC	2 cut(s)	108, 547
BspPI	GGATC	3 cut(s)	122, 287, 312
BspTNI	GGTCTC	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	110, 199, 247, 549
BssMI	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	3 cut(s)	110, 199, 247
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	175, 364
BstDEI	CTNAG	3 cut(s)	227, 254, 396
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 266
BstKTI	GATC	7 cut(s)	117, 295, 320, 391, 405, 498, 685
BstMAI	GTCTC	3 cut(s)	209, 571, 703
BstMBI	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 183, 312, 625
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	3 cut(s)	177, 270, 366
BstSCI	CCNGG	3 cut(s)	91, 352, 548
BstV1I	GCAGC	1 cut(s)	233
BstXI	CCANNNNNNTGG	2 cut(s)	206, 723
BsuRI	GGCC	3 cut(s)	315, 504, 735
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	175, 364
CfoI	GCGC	2 cut(s)	226, 266
Cfr13I	GGNCC	2 cut(s)	107, 726
Csp6I	GTAC	2 cut(s)	181, 557
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	5 cut(s)	103, 125, 174, 267, 363
CviJI	RGCY	9 cut(s)	44, 69, 198, 277, 315, 400, 504, 548, 735
CviKI_1	RGCY	9 cut(s)	44, 69, 198, 277, 315, 400, 504, 548, 735
CviQI	GTAC	2 cut(s)	181, 557
DdeI	CTNAG	3 cut(s)	227, 254, 396
DpnI	GATC	7 cut(s)	116, 294, 319, 390, 404, 497, 684
DpnII	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
EaeI	YGGCCR	2 cut(s)	502, 733
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	3 cut(s)	110, 199, 247
Eco31I	GGTCTC	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	107, 726
Eco47III	AGCGCT	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	110, 199, 247
ErhI	CCWWGG	3 cut(s)	110, 199, 247
Esp3I	CGTCTC	2 cut(s)	209, 703
FaeI	CATG	5 cut(s)	106, 128, 177, 270, 366
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	2 cut(s)	120, 566
FatI	CATG	5 cut(s)	102, 124, 173, 266, 362
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	67, 142, 222
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	67, 142, 222
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	225, 265
GluI	GCNGC	3 cut(s)	67, 142, 222
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	315, 504, 735
HapII	CCGG	5 cut(s)	93, 156, 432, 549, 747
HhaI	GCGC	2 cut(s)	226, 266
Hin1II	CATG	5 cut(s)	106, 128, 177, 270, 366
Hin6I	GCGC	2 cut(s)	224, 264
HinP1I	GCGC	2 cut(s)	224, 264
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HpaII	CCGG	5 cut(s)	93, 156, 432, 549, 747
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	289, 492, 559
Hpy188III	TCNNGA	2 cut(s)	493, 606
Hpy8I	GTNNAC	3 cut(s)	289, 492, 559
Hpy99I	CGWCG	2 cut(s)	78, 690
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	537, 555
HpyCH4V	TGCA	4 cut(s)	306, 362, 468, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 183, 312, 625
HpyF3I	CTNAG	3 cut(s)	227, 254, 396
HpySE526I	ACGT	2 cut(s)	537, 555
Hsp92II	CATG	5 cut(s)	106, 128, 177, 270, 366
HspAI	GCGC	2 cut(s)	224, 264
Kzo9I	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
LmnI	GCTCC	2 cut(s)	170, 545
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	537, 555
MaeIII	GTNAC	4 cut(s)	98, 328, 529, 670
MalI	GATC	7 cut(s)	116, 294, 319, 390, 404, 497, 684
MboI	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	4 cut(s)	414, 596, 610, 622
MluNI	TGGCCA	1 cut(s)	735
MnlI	CCTC	5 cut(s)	306, 360, 381, 576, 743
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	4 cut(s)	516, 599, 705, 766
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	735
MspI	CCGG	5 cut(s)	93, 156, 432, 549, 747
MspR9I	CCNGG	3 cut(s)	93, 354, 550
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	63, 183, 312, 625
NciI	CCSGG	2 cut(s)	93, 550
NdeII	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
NlaIII	CATG	5 cut(s)	106, 128, 177, 270, 366
NlaIV	GGNNCC	2 cut(s)	108, 547
NmuCI	GTSAC	3 cut(s)	98, 328, 529
NspI	RCATGY	3 cut(s)	177, 270, 366
OliI	CACNNNNGTG	1 cut(s)	536
PaeI	GCATGC	2 cut(s)	177, 366
PkrI	GCNGC	3 cut(s)	68, 143, 223
PpuMI	RGGWCCY	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	108, 547
PspPI	GGNCC	2 cut(s)	107, 726
PspPPI	RGGWCCY	1 cut(s)	107
RsaI	GTAC	2 cut(s)	182, 558
RsaNI	GTAC	2 cut(s)	181, 557
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	4 cut(s)	516, 599, 705, 766
SatI	GCNGC	3 cut(s)	67, 142, 222
Sau3AI	GATC	7 cut(s)	114, 292, 317, 388, 402, 495, 682
Sau96I	GGNCC	2 cut(s)	107, 726
ScrFI	CCNGG	3 cut(s)	93, 354, 550
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	8 cut(s)	46, 112, 205, 279, 491, 540, 558, 743
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	2 cut(s)	107, 726
SmiMI	CAYNNNNRTG	1 cut(s)	536
SphI	GCATGC	2 cut(s)	177, 366
Sse9I	AATT	4 cut(s)	414, 596, 610, 622
SsiI	CCGC	6 cut(s)	66, 81, 96, 141, 144, 177
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	91, 352, 548
StyI	CCWWGG	3 cut(s)	110, 199, 247
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	540, 558
TaqI	TCGA	5 cut(s)	243, 387, 581, 605, 688
TaqII	GACCGA	1 cut(s)	553
TasI	AATT	4 cut(s)	414, 596, 610, 622
TauI	GCSGC	2 cut(s)	69, 144
Tru1I	TTAA	4 cut(s)	516, 599, 705, 766
Tru9I	TTAA	4 cut(s)	516, 599, 705, 766
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	3 cut(s)	98, 328, 529
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	3 cut(s)	98, 328, 529
TspDTI	ATGAA	2 cut(s)	23, 587
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	107, 726
VspI	ATTAAT	1 cut(s)	599
XceI	RCATGY	3 cut(s)	177, 270, 366
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.