Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

3514537 .. 3516328

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGACTGACTTCTATTTATTCTTCTTCAAAAACTATCAGACCCCCCCTCCCTTCCTCTTCATTTCCTCACTACTTCATCCTTTCAAACTTCATCATATCATAATTTCCTCTTTGAAAATGGCTTCCTTGGGGATTCTTGTAATTGGGTTTCTCTCACTTGTCTCTTCTGTTAATGGCTACTATGGAGGTTGGTCCAATGCTCATGCAACCTTTTATGGAGGTGGTGATGCTTCTGGCACAATGGGAGGGGCTTGTGGATATGGGAACCTATACAGCCAGGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCACTGTTCAACAATGGCTTGACCTGTGGGGCATGCTATCAGATCAGGTGTGTGAATGATCCTCAGTGGTGCCTCCCTGGCTCCATCATAGTCACTGCCACAAACTTCTGCCCACCAGGTGGCTGGTGCGACCCTCCCCAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCTCAATACAAAGCCGGGGTTGTCCCAGTTTCCTACAGAAGGGTTAGATGCAGGAGAAGAGGAGGCATAAGGTTCACAGTCAATGGACACTCTTACTTCAACTTAGTCCTTGTGACAAACGTTGGTGGTGCTGGTGATGTGCAATCTGTGGCCATCAAGGGCTCGAGGACTCGGTGGCAAGCAATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCCTTTCTTGTGACCACCAGTGATGGCCGCAGACTGGTTTCTTACAATGTTGCCCCTCCTAATTGGTCATTTGGTCAGACATATACCGGGAGACAGTTTCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

282

Amino Acids

30.95

Weight (kDa)

9.57

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	69 - 183	2.5e-07	EXPB1-like domain 1
DPBB_1	PF03330	100 - 177	1.8e-23	Lytic transglycolase
Expansin_C	PF01357	188 - 265	1e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	434
AciI	CCGC	2 cut(s)	490, 766
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	2 cut(s)	645, 763
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	434, 534, 772
AgsI	TTSAA	5 cut(s)	31, 88, 118, 325, 595
AjnI	CCWGG	3 cut(s)	279, 391, 430
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	169, 823
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	3 cut(s)	645, 694, 763
ApeKI	GCWGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	195, 694
AsuC2I	CCSGG	2 cut(s)	511, 826
AsuHPI	GGTGA	2 cut(s)	239, 641
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	3 cut(s)	407, 656, 755
BciT130I	CCWGG	3 cut(s)	281, 393, 432
BcnI	CCSGG	2 cut(s)	511, 826
BcoDI	GTCTC	2 cut(s)	169, 823
BfmI	CTRYAG	1 cut(s)	529
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	2 cut(s)	303, 766
BlsI	GCNGC	2 cut(s)	304, 767
Bme1390I	CCNGG	5 cut(s)	281, 393, 432, 511, 826
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	195, 694
BmiI	GGNNCC	4 cut(s)	269, 386, 397, 695
BmrFI	CCNGG	5 cut(s)	281, 393, 432, 511, 826
BmrI	ACTGGG	2 cut(s)	515, 700
BmsI	GCATC	2 cut(s)	220, 533
BmuI	ACTGGG	2 cut(s)	515, 700
BpiI	GAAGAC	1 cut(s)	475
BpuMI	CCSGG	2 cut(s)	511, 826
BsaJI	CCNNGG	4 cut(s)	129, 280, 391, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 534, 772
Bse1I	ACTGG	5 cut(s)	521, 695, 707, 756, 777
Bse3DI	GCAATG	2 cut(s)	492, 684
BseBI	CCWGG	3 cut(s)	281, 393, 432
BseDI	CCNNGG	4 cut(s)	129, 280, 391, 510
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	434, 534, 772
BseMI	GCAATG	2 cut(s)	492, 684
BseMII	CTCAG	2 cut(s)	392, 488
BseNI	ACTGG	5 cut(s)	521, 695, 707, 756, 777
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	647, 696, 765
BshNI	GGYRCC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	510, 825
BslFI	GGGAC	2 cut(s)	304, 503
BslI	CCNNNNNNNGG	3 cut(s)	434, 534, 772
BsmAI	GTCTC	2 cut(s)	169, 823
BsmFI	GGGAC	2 cut(s)	304, 503
BsnI	GGCC	3 cut(s)	647, 696, 765
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	357, 373, 466
BspACI	CCGC	2 cut(s)	490, 766
BspANI	GGCC	3 cut(s)	647, 696, 765
BspCNI	CTCAG	2 cut(s)	391, 487
BspLI	GGNNCC	4 cut(s)	269, 386, 397, 695
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	492, 684
BsrI	ACTGG	5 cut(s)	521, 695, 707, 756, 777
BssECI	CCNNGG	4 cut(s)	129, 280, 391, 510
BssMI	GATC	3 cut(s)	357, 373, 466
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	281, 393, 432
Bst4CI	ACNGT	3 cut(s)	321, 574, 834
Bst6I	CTCTTC	3 cut(s)	65, 172, 547
BstC8I	GCNNGC	2 cut(s)	349, 675
BstDEI	CTNAG	4 cut(s)	308, 378, 474, 598
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	3 cut(s)	360, 376, 469
BstMAI	GTCTC	2 cut(s)	169, 823
BstMBI	GATC	3 cut(s)	357, 373, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	3 cut(s)	281, 393, 432
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	5 cut(s)	279, 391, 430, 509, 824
BstSFI	CTRYAG	1 cut(s)	529
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	475
BstXI	CCANNNNNNTGG	2 cut(s)	287, 438
BsuRI	GGCC	3 cut(s)	647, 696, 765
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	2 cut(s)	312, 408
BtsIMutI	CAGTG	5 cut(s)	312, 317, 386, 408, 763
Cac8I	GCNNGC	2 cut(s)	349, 675
Cfr13I	GGNCC	2 cut(s)	195, 694
CsiI	ACCWGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	206, 348
DdeI	CTNAG	4 cut(s)	308, 378, 474, 598
DpnI	GATC	3 cut(s)	359, 375, 468
DpnII	GATC	3 cut(s)	357, 373, 466
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	2 cut(s)	645, 763
Eam1104I	CTCTTC	3 cut(s)	65, 172, 547
EarI	CTCTTC	3 cut(s)	65, 172, 547
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	279, 391, 430
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	209, 351
FaqI	GGGAC	2 cut(s)	304, 503
FatI	CATG	2 cut(s)	205, 347
Fnu4HI	GCNGC	2 cut(s)	303, 766
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	2 cut(s)	303, 766
GluI	GCNGC	2 cut(s)	303, 766
GsaI	CCCAGC	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	647, 696, 765
HapII	CCGG	2 cut(s)	510, 825
Hin1II	CATG	2 cut(s)	209, 351
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	136, 664
HpaII	CCGG	2 cut(s)	510, 825
HphI	GGTGA	2 cut(s)	239, 641
Hpy166II	GTNNAC	2 cut(s)	6, 570
Hpy188I	TCNGA	3 cut(s)	42, 357, 816
Hpy188III	TCNNGA	1 cut(s)	684
Hpy8I	GTNNAC	2 cut(s)	6, 570
HpyAV	CCTTC	2 cut(s)	64, 528
HpyCH4III	ACNGT	3 cut(s)	321, 574, 834
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	4 cut(s)	209, 317, 546, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	4 cut(s)	308, 378, 474, 598
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	209, 351
Kzo9I	GATC	3 cut(s)	357, 373, 466
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	220, 533
MabI	ACCWGGT	1 cut(s)	430
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	406, 607, 748
MalI	GATC	3 cut(s)	359, 375, 468
MboI	GATC	3 cut(s)	357, 373, 466
MboII	GAAGA	6 cut(s)	16, 19, 52, 159, 475, 564
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	105, 144, 712, 799
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	2 cut(s)	510, 825
MspR9I	CCNGG	5 cut(s)	281, 393, 432, 511, 826
MvaI	CCWGG	3 cut(s)	281, 393, 432
MwoI	GCNNNNNNNGC	1 cut(s)	393
NciI	CCSGG	2 cut(s)	511, 826
NdeII	GATC	3 cut(s)	357, 373, 466
NlaIII	CATG	2 cut(s)	209, 351
NlaIV	GGNNCC	4 cut(s)	269, 386, 397, 695
NmuCI	GTSAC	3 cut(s)	406, 607, 748
NspI	RCATGY	1 cut(s)	351
PaeI	GCATGC	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	304, 767
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	279, 391, 430
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	3 cut(s)	279, 391, 430
PspN4I	GGNNCC	4 cut(s)	269, 386, 397, 695
PspPI	GGNCC	2 cut(s)	195, 694
PspXI	VCTCGAGB	1 cut(s)	658
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	303, 766
Sau3AI	GATC	3 cut(s)	357, 373, 466
Sau96I	GGNCC	2 cut(s)	195, 694
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	5 cut(s)	281, 393, 432, 511, 826
SduI	GDGCHC	1 cut(s)	659
SexAI	ACCWGGT	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	220, 533
SfcI	CTRYAG	1 cut(s)	529
Sfr274I	CTCGAG	1 cut(s)	658
SinI	GGWCC	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	4 cut(s)	105, 144, 712, 799
SsiI	CCGC	2 cut(s)	490, 766
StyD4I	CCNGG	5 cut(s)	279, 391, 430, 509, 824
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	321, 574, 834
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	659
TasI	AATT	4 cut(s)	105, 144, 712, 799
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	5 cut(s)	319, 324, 386, 415, 763
TseFI	GTSAC	3 cut(s)	406, 607, 748
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	3 cut(s)	406, 607, 748
TspDTI	ATGAA	3 cut(s)	52, 68, 83
TspRI	CASTG	5 cut(s)	319, 324, 386, 415, 763
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	532
XceI	RCATGY	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XhoI	CTCGAG	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.