Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

36358821 .. 36360920

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAGAGTCCCAAAACCACTTAGCAGAGAGTTGCTTGGTCCCAACAGCTCAAACTTTGTCAGGTTGTCAATTCAGGACAAAATGGCTGCTTTTTTGGGGATTCTTCTAGTTGGGTTTATGTCTATGTTCTCTTCTGTTAATGGGTATTATTATTCTGGTTGGTCCAATGCTCATGCAACCTTCTATGGAGGTGGTGATGCTTCTGGTACTATGGGTGGAGCTTGTGGCTATGGCAATCTATACAGCCAAGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGCTGTGGAGCATGTTATGAGCTCAGGTGTGTGAATGACCCACAATGGTGCCTCCCTGGCACCATTGTTGTCACTGCCACTAACTTCTGCCCGCCAGGGGGTTGGTGCGACCCTCCACAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCTTAAGATTGCTCAGTACAGAGCTGGAGTTGTCCCTGTATCATACAGAAGGGTGAGATGCAGGAGAGCAGGAGGCATAAGGTTCACTATAAATGGACATTCATACTTCAACCTAGTGCTGGTGACCAACGTCGGCGGTGCCGGAGATGTCCAATCCGTGGCCATCAAAGGTTCAAGAACCCGGTGGCAAATGATGTCAAGAAACTGGGGACAAAACTGGCAAAGCAATTCGTACCTCAATGGACAAAGCCTTTCTTTTCTTGTCACAACCAGCGATGGCCGCAAATTGGTTTCATACAATGTTGCCCCTCCTAACTGGTCATTTGGTCAGACATACACAGGAAGACAGTACCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

271

Amino Acids

29.61

Weight (kDa)

9.57

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	31 - 145	8.8e-08	EXPB1-like domain 1
DPBB_1	PF03330	62 - 139	2e-23	Lytic transglycolase
Expansin_C	PF01357	150 - 227	2e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	351, 362, 590
AccB7I	CCANNNNNTGG	1 cut(s)	610
AciI	CCGC	3 cut(s)	395, 588, 733
AcoI	YGGCCR	2 cut(s)	612, 730
AfaI	GTAC	4 cut(s)	208, 470, 686, 803
AfiI	CCNNNNNNNGG	5 cut(s)	400, 401, 571, 610, 739
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	3 cut(s)	292, 562, 627
AjnI	CCWGG	2 cut(s)	358, 397
AleI	CACNNNNGTG	1 cut(s)	349
AluBI	AGCT	6 cut(s)	48, 221, 272, 306, 325, 476
AluI	AGCT	6 cut(s)	48, 221, 272, 306, 325, 476
Alw21I	GWGCWC	1 cut(s)	327
AoxI	GGCC	2 cut(s)	612, 730
ApeKI	GCWGC	2 cut(s)	86, 269
AspS9I	GGNCC	2 cut(s)	38, 162
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	206, 517, 586
AvaII	GGWCC	2 cut(s)	38, 162
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	3 cut(s)	351, 362, 590
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	442, 802
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	73, 281
BccI	CCATC	2 cut(s)	623, 722
BciT130I	CCWGG	2 cut(s)	360, 399
BcnI	CCSGG	1 cut(s)	634
BfaI	CTAG	2 cut(s)	107, 566
BfrI	CTTAAG	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	87, 270, 733
BlsI	GCNGC	3 cut(s)	88, 271, 734
Bme1390I	CCNGG	3 cut(s)	360, 399, 634
Bme18I	GGWCC	2 cut(s)	38, 162
BmgT120I	GGNCC	2 cut(s)	38, 162
BmiI	GGNNCC	4 cut(s)	40, 353, 364, 592
BmrFI	CCNGG	3 cut(s)	360, 399, 634
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	187, 500
BmuI	ACTGGG	1 cut(s)	667
BoxI	GACNNNNGTC	1 cut(s)	581
BpiI	GAAGAC	2 cut(s)	442, 802
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	247, 358, 398, 609
Bsc4I	CCNNNNNNNGG	5 cut(s)	400, 401, 571, 610, 739
Bse1I	ACTGG	3 cut(s)	662, 674, 773
BseBI	CCWGG	2 cut(s)	360, 399
BseDI	CCNNGG	4 cut(s)	247, 358, 398, 609
BseLI	CCNNNNNNNGG	5 cut(s)	400, 401, 571, 610, 739
BseMII	CTCAG	3 cut(s)	340, 455, 479
BseNI	ACTGG	3 cut(s)	662, 674, 773
BseXI	GCAGC	2 cut(s)	73, 281
BshFI	GGCC	2 cut(s)	614, 732
BshNI	GGYRCC	3 cut(s)	351, 362, 590
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	594, 634
BslFI	GGGAC	4 cut(s)	24, 271, 470, 675
BslI	CCNNNNNNNGG	5 cut(s)	400, 401, 571, 610, 739
BsmFI	GGGAC	4 cut(s)	24, 271, 470, 675
BsnI	GGCC	2 cut(s)	614, 732
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	3 cut(s)	395, 588, 733
BspANI	GGCC	2 cut(s)	614, 732
BspCNI	CTCAG	3 cut(s)	339, 454, 478
BspLI	GGNNCC	4 cut(s)	40, 353, 364, 592
BspT107I	GGYRCC	3 cut(s)	351, 362, 590
BspTI	CTTAAG	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	662, 674, 773
BssECI	CCNNGG	4 cut(s)	247, 358, 398, 609
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	360, 399
Bst4CI	ACNGT	2 cut(s)	801, 806
Bst6I	CTCTTC	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	5 cut(s)	20, 275, 326, 441, 465
BstDSI	CCRYGG	1 cut(s)	609
BstEII	GGTNACC	1 cut(s)	574
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 732
BstNI	CCWGG	2 cut(s)	360, 399
BstNSI	RCATGY	1 cut(s)	318
BstPAI	GACNNNNGTC	1 cut(s)	581
BstPI	GGTNACC	1 cut(s)	574
BstSCI	CCNGG	3 cut(s)	358, 397, 632
BstV1I	GCAGC	2 cut(s)	73, 281
BstV2I	GAAGAC	2 cut(s)	442, 802
BstXI	CCANNNNNNTGG	2 cut(s)	254, 405
BsuRI	GGCC	2 cut(s)	614, 732
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	741
BtsI	GCAGTG	2 cut(s)	279, 375
BtsIMutI	CAGTG	2 cut(s)	279, 375
Cac8I	GCNNGC	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	38, 162
Csp6I	GTAC	4 cut(s)	207, 469, 685, 802
CviAII	CATG	2 cut(s)	173, 315
CviQI	GTAC	4 cut(s)	207, 469, 685, 802
DdeI	CTNAG	5 cut(s)	20, 275, 326, 441, 465
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	612, 730
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	38, 162
Eco53kI	GAGCTC	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	358, 397
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	176, 318
FalI	AAGNNNNNCTT	4 cut(s)	268, 300, 691, 723
FaqI	GGGAC	4 cut(s)	24, 271, 470, 675
FatI	CATG	2 cut(s)	172, 314
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	87, 270, 733
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	87, 270, 733
FspBI	CTAG	2 cut(s)	107, 566
GluI	GCNGC	3 cut(s)	87, 270, 733
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	614, 732
HapII	CCGG	2 cut(s)	594, 634
Hin1II	CATG	2 cut(s)	176, 318
HinfI	GANTC	2 cut(s)	6, 100
HpaII	CCGG	2 cut(s)	594, 634
HphI	GGTGA	3 cut(s)	206, 517, 586
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	1 cut(s)	783
Hpy188III	TCNNGA	3 cut(s)	74, 627, 651
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	190, 495
HpyCH4III	ACNGT	2 cut(s)	801, 806
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	2 cut(s)	176, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 732
HpyF3I	CTNAG	5 cut(s)	20, 275, 326, 441, 465
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	176, 318
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	218, 311
Lsp1109I	GCAGC	2 cut(s)	73, 281
LweI	GCATC	2 cut(s)	187, 500
MaeI	CTAG	2 cut(s)	107, 566
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	373, 574, 715
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	4 cut(s)	95, 123, 442, 807
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	3 cut(s)	69, 679, 737
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	6 cut(s)	182, 365, 426, 518, 698, 771
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	3 cut(s)	138, 456, 811
MslI	CAYNNNNRTG	1 cut(s)	349
Msp20I	TGGCCA	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	2 cut(s)	594, 634
MspR9I	CCNGG	3 cut(s)	360, 399, 634
MvaI	CCWGG	2 cut(s)	360, 399
MwoI	GCNNNNNNNGC	2 cut(s)	360, 732
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	176, 318
NlaIV	GGNNCC	4 cut(s)	40, 353, 364, 592
NmuCI	GTSAC	3 cut(s)	373, 574, 715
NspI	RCATGY	1 cut(s)	318
OliI	CACNNNNGTG	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	88, 271, 734
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	358, 397
PspEI	GGTNACC	1 cut(s)	574
PspGI	CCWGG	2 cut(s)	358, 397
PspN4I	GGNNCC	4 cut(s)	40, 353, 364, 592
PspPI	GGNCC	2 cut(s)	38, 162
RsaI	GTAC	4 cut(s)	208, 470, 686, 803
RsaNI	GTAC	4 cut(s)	207, 469, 685, 802
RseI	CAYNNNNRTG	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	138, 456, 811
SatI	GCNGC	3 cut(s)	87, 270, 733
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	38, 162
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	360, 399, 634
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	187, 500
SinI	GGWCC	2 cut(s)	38, 162
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	301, 455
SmoI	CTYRAG	2 cut(s)	301, 455
Sse9I	AATT	3 cut(s)	69, 679, 737
SsiI	CCGC	3 cut(s)	395, 588, 733
SspMI	CTAG	2 cut(s)	107, 566
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	358, 397, 632
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	801, 806
TaiI	ACGT	1 cut(s)	585
TasI	AATT	3 cut(s)	69, 679, 737
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	138, 456, 811
Tru9I	TTAA	3 cut(s)	138, 456, 811
TscAI	CASTG	2 cut(s)	286, 382
TseFI	GTSAC	3 cut(s)	373, 574, 715
TseI	GCWGC	2 cut(s)	86, 269
Tsp45I	GTSAC	3 cut(s)	373, 574, 715
TspDTI	ATGAA	2 cut(s)	543, 735
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	2 cut(s)	286, 382
Van91I	CCANNNNNTGG	1 cut(s)	610
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	38, 162
XceI	RCATGY	1 cut(s)	318
XspI	CTAG	2 cut(s)	107, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.