Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

2660660 .. 2662084

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTCCCAACAGCTCTAAAATTGTCAGCTATTGTCATTTCAGGTGTGATGTTGACTGACTTCTATTTATTCTTCTTCAAAAACTATCAGACCCCCACTCCCTTCCTCTTCATTTCCTCACTACTTCATCCTTTCAAACTTCATCATATCATAATTTCCTCTTTGAAAATGGCTTCCTTGACGATTCTTGTAATTGGGTTTCTCTCACTTGTCTCTTCTGTTAATGGCTACTATGGAGGTTGGTCCAATGCTCATGCAACCTTTTATGGAGGTGGTGATGCTTCCGGCACGATGGGAGGGGCTTGTGGATATGGGAACCTATACAGCCAGGGTTATGGGACTAACACAGCAGCTCTAAGCACTGCACTGTTCAACAATGGCTTGACCTGTGGAGCATGCTATCAGATCAGGTGTGTGAATGATCCACAGTGGTGCCTCCCTGGCTCCATCATAGTCACTGCCACAAACTTCTGCCCACCAGGTGGCTGGTGCGACCCTCCCCAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCTCAATACAAAGCCGGGGTTGTCCCAGTTTCCTACAGAAGGGTTAGATGCAGGAGAAGAGGAGGCATAAGGTTCACAGTCAATGGACACTCTTACTTCAACTTAGTCCTTGTGACAAACGTTGGTGGTGCTGGTGATGTGCAATCTGTGGCCATCAAGGGCTCGAGGACTCGGTGGCAAGCAATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCCTTTCTTGTGACCACCAGTGATGGCCGCAGACTGGTTTCTTACAATGTTGCCCCTCCTAATTGGTCATTTGGTCAGACATATACTGGGAGACAGTTTCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

298

Amino Acids

32.58

Weight (kDa)

9.62

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	2 cut(s)	538, 814
AclI	AACGTT	1 cut(s)	663
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	2 cut(s)	693, 811
AdeI	CACNNNGTG	1 cut(s)	482
AfiI	CCNNNNNNNGG	3 cut(s)	482, 582, 820
AgsI	TTSAA	5 cut(s)	79, 136, 166, 373, 643
AjnI	CCWGG	3 cut(s)	327, 439, 478
AleI	CACNNNNGTG	1 cut(s)	430
AluBI	AGCT	3 cut(s)	14, 29, 353
AluI	AGCT	3 cut(s)	14, 29, 353
Alw26I	GTCTC	2 cut(s)	217, 871
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	3 cut(s)	693, 742, 811
ApeKI	GCWGC	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	4, 243, 742
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	287, 689
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	4, 243
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	4 cut(s)	286, 455, 704, 803
BciT130I	CCWGG	3 cut(s)	329, 441, 480
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	217, 871
BfmI	CTRYAG	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	351, 814
BlsI	GCNGC	2 cut(s)	352, 815
Bme1390I	CCNGG	4 cut(s)	329, 441, 480, 559
Bme18I	GGWCC	2 cut(s)	4, 243
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	3 cut(s)	4, 243, 742
BmiI	GGNNCC	5 cut(s)	6, 317, 434, 445, 743
BmrFI	CCNGG	4 cut(s)	329, 441, 480, 559
BmrI	ACTGGG	3 cut(s)	563, 748, 882
BmsI	GCATC	2 cut(s)	268, 581
BmuI	ACTGGG	3 cut(s)	563, 748, 882
BpiI	GAAGAC	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	3 cut(s)	328, 439, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 582, 820
Bse1I	ACTGG	6 cut(s)	569, 743, 755, 804, 825, 877
Bse3DI	GCAATG	2 cut(s)	540, 732
BseBI	CCWGG	3 cut(s)	329, 441, 480
BseDI	CCNNGG	3 cut(s)	328, 439, 558
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	3 cut(s)	482, 582, 820
BseMI	GCAATG	2 cut(s)	540, 732
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	6 cut(s)	569, 743, 755, 804, 825, 877
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	695, 744, 813
BshNI	GGYRCC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	285, 558
BslFI	GGGAC	2 cut(s)	352, 551
BslI	CCNNNNNNNGG	3 cut(s)	482, 582, 820
BsmAI	GTCTC	2 cut(s)	217, 871
BsmFI	GGGAC	2 cut(s)	352, 551
BsnI	GGCC	3 cut(s)	695, 744, 813
BsoBI	CYCGRG	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	405, 421, 514
BspACI	CCGC	2 cut(s)	538, 814
BspANI	GGCC	3 cut(s)	695, 744, 813
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	5 cut(s)	6, 317, 434, 445, 743
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	540, 732
BsrI	ACTGG	6 cut(s)	569, 743, 755, 804, 825, 877
BssECI	CCNNGG	3 cut(s)	328, 439, 558
BssMI	GATC	3 cut(s)	405, 421, 514
Bst2UI	CCWGG	3 cut(s)	329, 441, 480
Bst4CI	ACNGT	4 cut(s)	369, 429, 622, 882
Bst6I	CTCTTC	3 cut(s)	113, 220, 595
BstC8I	GCNNGC	2 cut(s)	397, 723
BstDEI	CTNAG	3 cut(s)	356, 522, 646
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	408, 424, 517
BstMAI	GTCTC	2 cut(s)	217, 871
BstMBI	GATC	3 cut(s)	405, 421, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	3 cut(s)	329, 441, 480
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	4 cut(s)	327, 439, 478, 557
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	523
BstXI	CCANNNNNNTGG	2 cut(s)	335, 486
BsuRI	GGCC	3 cut(s)	695, 744, 813
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	2 cut(s)	360, 456
BtsIMutI	CAGTG	5 cut(s)	360, 365, 434, 456, 811
Cac8I	GCNNGC	2 cut(s)	397, 723
Cfr13I	GGNCC	3 cut(s)	4, 243, 742
CsiI	ACCWGGT	1 cut(s)	478
CviAII	CATG	2 cut(s)	254, 396
DdeI	CTNAG	3 cut(s)	356, 522, 646
DpnI	GATC	3 cut(s)	407, 423, 516
DpnII	GATC	3 cut(s)	405, 421, 514
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	693, 811
Eam1104I	CTCTTC	3 cut(s)	113, 220, 595
EarI	CTCTTC	3 cut(s)	113, 220, 595
Eco24I	GRGCYC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	4, 243
Eco88I	CYCGRG	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoRII	CCWGG	3 cut(s)	327, 439, 478
EcoT38I	GRGCYC	1 cut(s)	707
FaeI	CATG	2 cut(s)	257, 399
FaqI	GGGAC	2 cut(s)	352, 551
FatI	CATG	2 cut(s)	253, 395
Fnu4HI	GCNGC	2 cut(s)	351, 814
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	2 cut(s)	351, 814
GluI	GCNGC	2 cut(s)	351, 814
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	695, 744, 813
HapII	CCGG	2 cut(s)	285, 558
Hin1II	CATG	2 cut(s)	257, 399
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	184, 712
HpaII	CCGG	2 cut(s)	285, 558
HphI	GGTGA	2 cut(s)	287, 689
Hpy166II	GTNNAC	2 cut(s)	54, 618
Hpy188I	TCNGA	3 cut(s)	90, 405, 864
Hpy188III	TCNNGA	1 cut(s)	732
Hpy8I	GTNNAC	2 cut(s)	54, 618
HpyAV	CCTTC	2 cut(s)	112, 576
HpyCH4III	ACNGT	4 cut(s)	369, 429, 622, 882
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	257, 365, 594, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	3 cut(s)	356, 522, 646
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	257, 399
Kzo9I	GATC	3 cut(s)	405, 421, 514
LmnI	GCTCC	2 cut(s)	392, 449
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	2 cut(s)	268, 581
MabI	ACCWGGT	1 cut(s)	478
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	454, 655, 796
MalI	GATC	3 cut(s)	407, 423, 516
MboI	GATC	3 cut(s)	405, 421, 514
MboII	GAAGA	6 cut(s)	64, 67, 100, 207, 523, 612
MhlI	GDGCHC	1 cut(s)	707
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	5 cut(s)	20, 153, 192, 760, 847
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	1 cut(s)	706
Mox20I	TGGCCA	1 cut(s)	695
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	430
Msp20I	TGGCCA	1 cut(s)	695
MspI	CCGG	2 cut(s)	285, 558
MspR9I	CCNGG	4 cut(s)	329, 441, 480, 559
MvaI	CCWGG	3 cut(s)	329, 441, 480
MwoI	GCNNNNNNNGC	1 cut(s)	441
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	3 cut(s)	405, 421, 514
NlaIII	CATG	2 cut(s)	257, 399
NlaIV	GGNNCC	5 cut(s)	6, 317, 434, 445, 743
NmuCI	GTSAC	3 cut(s)	454, 655, 796
NspI	RCATGY	1 cut(s)	399
OliI	CACNNNNGTG	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	352, 815
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	3 cut(s)	327, 439, 478
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	3 cut(s)	327, 439, 478
PspN4I	GGNNCC	5 cut(s)	6, 317, 434, 445, 743
PspPI	GGNCC	3 cut(s)	4, 243, 742
PspXI	VCTCGAGB	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	351, 814
Sau3AI	GATC	3 cut(s)	405, 421, 514
Sau96I	GGNCC	3 cut(s)	4, 243, 742
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	4 cut(s)	329, 441, 480, 559
SduI	GDGCHC	1 cut(s)	707
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	268, 581
SfcI	CTRYAG	1 cut(s)	577
Sfr274I	CTCGAG	1 cut(s)	706
SinI	GGWCC	2 cut(s)	4, 243
SlaI	CTCGAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	5 cut(s)	20, 153, 192, 760, 847
SsiI	CCGC	2 cut(s)	538, 814
StyD4I	CCNGG	4 cut(s)	327, 439, 478, 557
TaaI	ACNGT	4 cut(s)	369, 429, 622, 882
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	707
TasI	AATT	5 cut(s)	20, 153, 192, 760, 847
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	5 cut(s)	367, 372, 434, 463, 811
TseFI	GTSAC	3 cut(s)	454, 655, 796
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	3 cut(s)	454, 655, 796
TspDTI	ATGAA	3 cut(s)	100, 116, 131
TspRI	CASTG	5 cut(s)	367, 372, 434, 463, 811
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	4, 243
XagI	CCTNNNNNAGG	1 cut(s)	580
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XhoI	CTCGAG	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.