Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

77442818 .. 77444470

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGAGTCCCAAAACCACTTAGCAGAGAGTTGCTTGGTCCCAACAGCTCAAGCTTTGAAAAAATGGCTTCTTTGGGGATTCTTCTAATTGGGTTTGTGTCTGTGCTCTCTTCTGTTAATGGCTATTATTATGCTGGTTGGTCCAATGCTCATGCAACCTTCTATGGAGGTGGTGATGCTTCTGGGACTATGGGTGGGGCTTGTGGCTATGGAAATCTATATAGCCAAGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGACTTGTGGAGCATGTTATGAGCTCAGGTGTGTAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTGGTCACTGCCACAAACTTCTGCCCGCCGGGGGGTTGGTGCGACCCTCCGCAGCAACATTTTGATCTATCTCAGCCTGTCTTCCTAAAGATTGCTCAGTACAGGGCCGGAGTTGTCCCTGTATCATACAGAAGGGTGAGATGCAGGAGAGCAGGAGGAATAAGGTTCACAGTGAATGGACACTCATACTTCAACCTAGTGCTGGTGACCAACGTCGGTGGTGCTGGAGATGTCCAATCTGTGGCCATTAAAGGCTCGAGAACCCGGTGGCAATTGATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTCTTGTCACAACCAGCGATGGCCGCAAATTGGTTTCTTACAATGTTGCTCCTCCCAATTGGTCATTTGGTCAGACATACACAGGAAGACAGTACCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

263

Amino Acids

28.65

Weight (kDa)

9.49

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	51 - 165	1.8e-07	EXPB1-like domain 1
DPBB_1	PF03330	82 - 159	6.7e-23	Lytic transglycolase
Expansin_C	PF01357	170 - 247	2.6e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	330, 341
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	4 cut(s)	374, 398, 712, 784
AcoI	YGGCCR	2 cut(s)	591, 709
AfaI	GTAC	2 cut(s)	449, 782
AfiI	CCNNNNNNNGG	5 cut(s)	379, 380, 550, 589, 718
AgsI	TTSAA	3 cut(s)	59, 271, 541
AjnI	CCWGG	1 cut(s)	337
AleI	CACNNNNGTG	2 cut(s)	328, 347
AluBI	AGCT	4 cut(s)	48, 54, 251, 304
AluI	AGCT	4 cut(s)	48, 54, 251, 304
Alw21I	GWGCWC	2 cut(s)	108, 306
Ama87I	CYCGRG	1 cut(s)	604
AoxI	GGCC	4 cut(s)	453, 591, 640, 709
ApeKI	GCWGC	2 cut(s)	248, 400
AspS9I	GGNCC	4 cut(s)	38, 141, 453, 640
AsuC2I	CCSGG	2 cut(s)	378, 613
AsuHPI	GGTGA	3 cut(s)	185, 496, 565
AvaI	CYCGRG	1 cut(s)	604
AvaII	GGWCC	2 cut(s)	38, 141
BalI	TGGCCA	1 cut(s)	593
BanI	GGYRCC	2 cut(s)	330, 341
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	421, 781
Bbv12I	GWGCWC	2 cut(s)	108, 306
BbvI	GCAGC	2 cut(s)	260, 412
BccI	CCATC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	378, 613
BfaI	CTAG	1 cut(s)	545
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	249, 401, 712
BlsI	GCNGC	3 cut(s)	250, 402, 713
Bme1390I	CCNGG	3 cut(s)	339, 378, 613
Bme18I	GGWCC	2 cut(s)	38, 141
BmeT110I	CYCGRG	1 cut(s)	604
BmgT120I	GGNCC	4 cut(s)	38, 141, 453, 640
BmiI	GGNNCC	4 cut(s)	40, 332, 343, 641
BmrFI	CCNGG	3 cut(s)	339, 378, 613
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	166, 479
BmuI	ACTGGG	1 cut(s)	646
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	421, 781
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	378, 613
BsaJI	CCNNGG	3 cut(s)	226, 337, 377
Bsc4I	CCNNNNNNNGG	5 cut(s)	379, 380, 550, 589, 718
Bse1I	ACTGG	2 cut(s)	641, 653
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	226, 337, 377
BseLI	CCNNNNNNNGG	5 cut(s)	379, 380, 550, 589, 718
BseMII	CTCAG	3 cut(s)	319, 434, 458
BseNI	ACTGG	2 cut(s)	641, 653
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	260, 412
BshFI	GGCC	4 cut(s)	455, 593, 642, 711
BshNI	GGYRCC	2 cut(s)	330, 341
BsiHKAI	GWGCWC	2 cut(s)	108, 306
BsiHKCI	CYCGRG	1 cut(s)	604
BsiSI	CCGG	3 cut(s)	377, 456, 613
BslFI	GGGAC	4 cut(s)	24, 199, 250, 449
BslI	CCNNNNNNNGG	5 cut(s)	379, 380, 550, 589, 718
BsmFI	GGGAC	4 cut(s)	24, 199, 250, 449
BsnI	GGCC	4 cut(s)	455, 593, 642, 711
BsoBI	CYCGRG	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	108, 306
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	4 cut(s)	374, 398, 712, 784
BspANI	GGCC	4 cut(s)	455, 593, 642, 711
BspCNI	CTCAG	3 cut(s)	318, 433, 457
BspLI	GGNNCC	4 cut(s)	40, 332, 343, 641
BspT107I	GGYRCC	2 cut(s)	330, 341
BsrI	ACTGG	2 cut(s)	641, 653
BssECI	CCNNGG	3 cut(s)	226, 337, 377
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	327, 520, 780
Bst6I	CTCTTC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	5 cut(s)	20, 254, 305, 420, 444
BstEII	GGTNACC	1 cut(s)	553
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 711
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	297
BstPAI	GACNNNNGTC	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	3 cut(s)	337, 376, 611
BstV1I	GCAGC	2 cut(s)	260, 412
BstV2I	GAAGAC	2 cut(s)	421, 781
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	4 cut(s)	455, 593, 642, 711
BtgZI	GCGATG	1 cut(s)	720
BtsI	GCAGTG	2 cut(s)	258, 354
BtsIMutI	CAGTG	4 cut(s)	258, 332, 354, 525
Cac8I	GCNNGC	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	38, 141, 453, 640
Csp6I	GTAC	2 cut(s)	448, 781
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	2 cut(s)	152, 294
CviQI	GTAC	2 cut(s)	448, 781
DdeI	CTNAG	5 cut(s)	20, 254, 305, 420, 444
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	2 cut(s)	591, 709
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	38, 141
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	604
Eco91I	GGTNACC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	155, 297
FalI	AAGNNNNNCTT	4 cut(s)	247, 279, 670, 702
FaqI	GGGAC	4 cut(s)	24, 199, 250, 449
FatI	CATG	2 cut(s)	151, 293
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	249, 401, 712
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	249, 401, 712
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	3 cut(s)	249, 401, 712
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	4 cut(s)	455, 593, 642, 711
HapII	CCGG	3 cut(s)	377, 456, 613
Hin1II	CATG	2 cut(s)	155, 297
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	2 cut(s)	6, 79
HpaII	CCGG	3 cut(s)	377, 456, 613
HphI	GGTGA	3 cut(s)	185, 496, 565
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	1 cut(s)	762
Hpy188III	TCNNGA	2 cut(s)	606, 630
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	2 cut(s)	169, 474
HpyCH4III	ACNGT	3 cut(s)	327, 520, 780
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	2 cut(s)	155, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 711
HpyF3I	CTNAG	5 cut(s)	20, 254, 305, 420, 444
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	155, 297
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	290, 742
Lsp1109I	GCAGC	2 cut(s)	260, 412
LweI	GCATC	2 cut(s)	166, 479
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	352, 553, 694
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	74, 102, 421, 786
MfeI	CAATTG	2 cut(s)	620, 745
MhlI	GDGCHC	2 cut(s)	108, 306
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	5 cut(s)	87, 620, 658, 716, 745
MluNI	TGGCCA	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	161, 344, 405, 497, 677, 692, 750
Mox20I	TGGCCA	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	3 cut(s)	117, 597, 790
MslI	CAYNNNNRTG	2 cut(s)	328, 347
Msp20I	TGGCCA	1 cut(s)	593
MspI	CCGG	3 cut(s)	377, 456, 613
MspR9I	CCNGG	3 cut(s)	339, 378, 613
MunI	CAATTG	2 cut(s)	620, 745
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	339, 711
NciI	CCSGG	2 cut(s)	378, 613
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	155, 297
NlaIV	GGNNCC	4 cut(s)	40, 332, 343, 641
NmuCI	GTSAC	3 cut(s)	352, 553, 694
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	2 cut(s)	328, 347
PaeR7I	CTCGAG	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	250, 402, 713
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	40, 332, 343, 641
PspPI	GGNCC	4 cut(s)	38, 141, 453, 640
RsaI	GTAC	2 cut(s)	449, 782
RsaNI	GTAC	2 cut(s)	448, 781
RseI	CAYNNNNRTG	2 cut(s)	328, 347
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	117, 597, 790
SatI	GCNGC	3 cut(s)	249, 401, 712
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	4 cut(s)	38, 141, 453, 640
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	339, 378, 613
SduI	GDGCHC	2 cut(s)	108, 306
SfaNI	GCATC	2 cut(s)	166, 479
Sfr274I	CTCGAG	1 cut(s)	604
SinI	GGWCC	2 cut(s)	38, 141
SlaI	CTCGAG	1 cut(s)	604
SmiMI	CAYNNNNRTG	2 cut(s)	328, 347
SmlI	CTYRAG	2 cut(s)	49, 604
SmoI	CTYRAG	2 cut(s)	49, 604
Sse9I	AATT	5 cut(s)	87, 620, 658, 716, 745
SsiI	CCGC	4 cut(s)	374, 398, 712, 784
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	337, 376, 611
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	327, 520, 780
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	605
TasI	AATT	5 cut(s)	87, 620, 658, 716, 745
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	3 cut(s)	117, 597, 790
Tru9I	TTAA	3 cut(s)	117, 597, 790
TscAI	CASTG	4 cut(s)	265, 332, 361, 525
TseFI	GTSAC	3 cut(s)	352, 553, 694
TseI	GCWGC	2 cut(s)	248, 400
Tsp45I	GTSAC	3 cut(s)	352, 553, 694
TspRI	CASTG	4 cut(s)	265, 332, 361, 525
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	2 cut(s)	38, 141
XceI	RCATGY	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	604
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.