Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

83165038 .. 83168126

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG610900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTAAAAGAGTTCACAAATCTTACAATGCAGGAAAAAATGGCTTCTTTGGGGATTCTTCTAATTGGGTTTGTGTCTGTGCTCTCTTCTGTTAATGGCTATTATTATGCTGGTTGGTCCAATGCTCATGCAACCTTCTATGGAGGTGGTGATGCTTCTGGGACTATGGGTGGGGCTTGTGGCTATGGAAATCTATATAGCCAAGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGACTTGTGGAGCATGTTATGAGCTCAGGTGTGTAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTGGTCACTGCCACAAACTTCTGCCCGCCGGGGGGTTGGTGCGACCCTCCGCAGCAACATTTTGATCTATCTCAGCCTGTCTTCCTAAAGATTGCTCAGTACAGGGCCGGAGTTGTCCCTGTATCATACAGAAGGGTGAGATGCAGGAGAGCAGGAGGAATAAGGTTCACAGTGAATGGACACTCATACTTCAACCTAGTGCTGGTGACCAACGTCGGTGGTGCTGGAGATGTCCAATCTGTGGCCATTAAAGGCTCGAGAACCCGGTGGCAATTGATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTCTTGTCACAACCAGCGATGGCCGCAAATTGGTTTCTTACAATGTTGCTCCTCCCAATTGGTCATTTGGTCAGACATACACAGGAAGACAGTACCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.89

Weight (kDa)

9.31

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	43 - 157	1.7e-07	EXPB1-like domain 1
DPBB_1	PF03330	74 - 151	6.3e-23	Lytic transglycolase
Expansin_C	PF01357	162 - 239	2.5e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	306, 317
AccB7I	CCANNNNNTGG	1 cut(s)	565
AciI	CCGC	4 cut(s)	350, 374, 688, 760
AcoI	YGGCCR	2 cut(s)	567, 685
AfaI	GTAC	2 cut(s)	425, 758
AfiI	CCNNNNNNNGG	5 cut(s)	355, 356, 526, 565, 694
AgsI	TTSAA	2 cut(s)	247, 517
AjnI	CCWGG	1 cut(s)	313
AleI	CACNNNNGTG	2 cut(s)	304, 323
AluBI	AGCT	2 cut(s)	227, 280
AluI	AGCT	2 cut(s)	227, 280
Alw21I	GWGCWC	2 cut(s)	84, 282
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	4 cut(s)	429, 567, 616, 685
ApeKI	GCWGC	2 cut(s)	224, 376
AspS9I	GGNCC	3 cut(s)	117, 429, 616
AsuC2I	CCSGG	2 cut(s)	354, 589
AsuHPI	GGTGA	3 cut(s)	161, 472, 541
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	2 cut(s)	306, 317
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	397, 757
Bbv12I	GWGCWC	2 cut(s)	84, 282
BbvI	GCAGC	2 cut(s)	236, 388
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	354, 589
BfaI	CTAG	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	3 cut(s)	225, 377, 688
BlsI	GCNGC	3 cut(s)	226, 378, 689
Bme1390I	CCNGG	3 cut(s)	315, 354, 589
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	117, 429, 616
BmiI	GGNNCC	3 cut(s)	308, 319, 617
BmrFI	CCNGG	3 cut(s)	315, 354, 589
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	142, 455
BmuI	ACTGGG	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	536
BpiI	GAAGAC	2 cut(s)	397, 757
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	354, 589
BsaJI	CCNNGG	3 cut(s)	202, 313, 353
Bsc4I	CCNNNNNNNGG	5 cut(s)	355, 356, 526, 565, 694
Bse1I	ACTGG	2 cut(s)	617, 629
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	202, 313, 353
BseLI	CCNNNNNNNGG	5 cut(s)	355, 356, 526, 565, 694
BseMII	CTCAG	3 cut(s)	295, 410, 434
BseNI	ACTGG	2 cut(s)	617, 629
BseRI	GAGGAG	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	236, 388
BshFI	GGCC	4 cut(s)	431, 569, 618, 687
BshNI	GGYRCC	2 cut(s)	306, 317
BsiHKAI	GWGCWC	2 cut(s)	84, 282
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	3 cut(s)	353, 432, 589
BslFI	GGGAC	3 cut(s)	175, 226, 425
BslI	CCNNNNNNNGG	5 cut(s)	355, 356, 526, 565, 694
BsmFI	GGGAC	3 cut(s)	175, 226, 425
BsnI	GGCC	4 cut(s)	431, 569, 618, 687
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	84, 282
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	4 cut(s)	350, 374, 688, 760
BspANI	GGCC	4 cut(s)	431, 569, 618, 687
BspCNI	CTCAG	3 cut(s)	294, 409, 433
BspLI	GGNNCC	3 cut(s)	308, 319, 617
BspT107I	GGYRCC	2 cut(s)	306, 317
BsrI	ACTGG	2 cut(s)	617, 629
BssECI	CCNNGG	3 cut(s)	202, 313, 353
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	303, 496, 756
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	230, 281, 396, 420
BstEII	GGTNACC	1 cut(s)	529
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 687
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	313, 352, 587
BstV1I	GCAGC	2 cut(s)	236, 388
BstV2I	GAAGAC	2 cut(s)	397, 757
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	4 cut(s)	431, 569, 618, 687
BtgZI	GCGATG	1 cut(s)	696
BtsI	GCAGTG	2 cut(s)	234, 330
BtsIMutI	CAGTG	4 cut(s)	234, 308, 330, 501
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	117, 429, 616
Csp6I	GTAC	2 cut(s)	424, 757
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	2 cut(s)	128, 270
CviQI	GTAC	2 cut(s)	424, 757
DdeI	CTNAG	4 cut(s)	230, 281, 396, 420
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	2 cut(s)	567, 685
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	131, 273
FalI	AAGNNNNNCTT	4 cut(s)	223, 255, 646, 678
FaqI	GGGAC	3 cut(s)	175, 226, 425
FatI	CATG	2 cut(s)	127, 269
FauI	CCCGC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	225, 377, 688
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	225, 377, 688
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	3 cut(s)	225, 377, 688
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	431, 569, 618, 687
HapII	CCGG	3 cut(s)	353, 432, 589
Hin1II	CATG	2 cut(s)	131, 273
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	3 cut(s)	353, 432, 589
HphI	GGTGA	3 cut(s)	161, 472, 541
Hpy166II	GTNNAC	2 cut(s)	15, 492
Hpy188I	TCNGA	1 cut(s)	738
Hpy188III	TCNNGA	2 cut(s)	582, 606
Hpy8I	GTNNAC	2 cut(s)	15, 492
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	145, 450
HpyCH4III	ACNGT	3 cut(s)	303, 496, 756
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	31, 131, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 687
HpyF3I	CTNAG	4 cut(s)	230, 281, 396, 420
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	131, 273
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	266, 718
Lsp1109I	GCAGC	2 cut(s)	236, 388
LweI	GCATC	2 cut(s)	142, 455
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	3 cut(s)	328, 529, 670
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	4 cut(s)	50, 78, 397, 762
MfeI	CAATTG	2 cut(s)	596, 721
MhlI	GDGCHC	2 cut(s)	84, 282
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	5 cut(s)	63, 596, 634, 692, 721
MluNI	TGGCCA	1 cut(s)	569
MnlI	CCTC	7 cut(s)	137, 320, 381, 473, 653, 668, 726
Mox20I	TGGCCA	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	3 cut(s)	93, 573, 766
MslI	CAYNNNNRTG	2 cut(s)	304, 323
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	3 cut(s)	353, 432, 589
MspR9I	CCNGG	3 cut(s)	315, 354, 589
MunI	CAATTG	2 cut(s)	596, 721
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	315, 687
NciI	CCSGG	2 cut(s)	354, 589
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	131, 273
NlaIV	GGNNCC	3 cut(s)	308, 319, 617
NmuCI	GTSAC	3 cut(s)	328, 529, 670
NspI	RCATGY	1 cut(s)	273
OliI	CACNNNNGTG	2 cut(s)	304, 323
PaeR7I	CTCGAG	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	226, 378, 689
PshAI	GACNNNNGTC	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	308, 319, 617
PspPI	GGNCC	3 cut(s)	117, 429, 616
RsaI	GTAC	2 cut(s)	425, 758
RsaNI	GTAC	2 cut(s)	424, 757
RseI	CAYNNNNRTG	2 cut(s)	304, 323
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	93, 573, 766
SatI	GCNGC	3 cut(s)	225, 377, 688
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	3 cut(s)	117, 429, 616
ScrFI	CCNGG	3 cut(s)	315, 354, 589
SduI	GDGCHC	2 cut(s)	84, 282
SetI	ASST	9 cut(s)	137, 148, 229, 282, 287, 491, 522, 540, 645
SfaNI	GCATC	2 cut(s)	142, 455
Sfr274I	CTCGAG	1 cut(s)	580
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	580
SmiMI	CAYNNNNRTG	2 cut(s)	304, 323
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	5 cut(s)	63, 596, 634, 692, 721
SsiI	CCGC	4 cut(s)	350, 374, 688, 760
SspMI	CTAG	1 cut(s)	521
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	313, 352, 587
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	303, 496, 756
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	581
TasI	AATT	5 cut(s)	63, 596, 634, 692, 721
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	3 cut(s)	93, 573, 766
Tru9I	TTAA	3 cut(s)	93, 573, 766
TscAI	CASTG	4 cut(s)	241, 308, 337, 501
TseFI	GTSAC	3 cut(s)	328, 529, 670
TseI	GCWGC	2 cut(s)	224, 376
Tsp45I	GTSAC	3 cut(s)	328, 529, 670
TspRI	CASTG	4 cut(s)	241, 308, 337, 501
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	580
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.