Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

66160388 .. 66161175

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0531600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGTGCTTTTCTGATGCTAATTGACGCCATACTCTTTTTATACTTCATCGTAATGGCGATGTCGCCGATGGTCAACGCGCAGCTAGTTCTGCCTCCAAGCCTCTTTCTGGAGTGGATGGTGGAGTACCGAGTACAAGAACTGTGGCCTCTTGCCCTTGCCAACTTGTATGGCATGTTGGTTGGAAAGTCTTGGTACAACACCACCTGCTTGGTCCATGGCGCCACTTACTTAACCACCATGCGTAGCGGTCACCGTGTTAACAGAGATGATAGGTTCTGGCAAGGCATCGAACAAGCTGTTACTATTGTGCTACCCTTTTTTGGGGTTTATGTGTTGGCCATGCTGCGTGGGCTGCTGCCGCCATCAACCTCTACTTCAACAGCCAATGCCACAAAAAAGAAAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

137

Amino Acids

15.55

Weight (kDa)

9.46

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	249, 362
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	27, 222
AfaI	GTAC	3 cut(s)	128, 135, 197
AfiI	CCNNNNNNNGG	3 cut(s)	109, 323, 324
AgsI	TTSAA	1 cut(s)	381
AluBI	AGCT	2 cut(s)	85, 299
AluI	AGCT	2 cut(s)	85, 299
AoxI	GGCC	2 cut(s)	146, 339
ApeKI	GCWGC	4 cut(s)	82, 346, 355, 358
AspLEI	GCGC	2 cut(s)	82, 224
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	4 cut(s)	94, 333, 342, 345
BccI	CCATC	3 cut(s)	64, 112, 373
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	5 cut(s)	83, 347, 356, 359, 362
BlsI	GCNGC	5 cut(s)	84, 348, 357, 360, 363
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	6, 297
BpmI	CTGGAG	1 cut(s)	131
BsaHI	GRCGYC	2 cut(s)	27, 222
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 323, 324
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	3 cut(s)	109, 323, 324
BseXI	GCAGC	4 cut(s)	94, 333, 342, 345
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	148, 341
BshNI	GGYRCC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	109, 323, 324
BsnI	GGCC	2 cut(s)	148, 341
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	2 cut(s)	249, 362
BspANI	GGCC	2 cut(s)	148, 341
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	217
BssNI	GRCGYC	2 cut(s)	27, 222
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	144, 257
BstACI	GRCGYC	2 cut(s)	27, 222
BstDSI	CCRYGG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	82, 224
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 352, 355, 361
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	4 cut(s)	94, 333, 342, 345
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	148, 341
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	82, 224
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	127, 134, 196
CspCI	CAANNNNNGTGG	2 cut(s)	125, 160
CviAII	CATG	4 cut(s)	175, 218, 241, 343
CviJI	RGCY	7 cut(s)	85, 102, 148, 299, 341, 355, 386
CviKI_1	RGCY	7 cut(s)	85, 102, 148, 299, 341, 355, 386
CviQI	GTAC	3 cut(s)	127, 134, 196
DinI	GGCGCC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	4 cut(s)	178, 221, 244, 346
FaiI	YATR	8 cut(s)	32, 43, 171, 176, 219, 242, 333, 344
FatI	CATG	4 cut(s)	174, 217, 240, 342
Fnu4HI	GCNGC	5 cut(s)	83, 347, 356, 359, 362
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	5 cut(s)	83, 347, 356, 359, 362
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	81, 223
GluI	GCNGC	5 cut(s)	83, 347, 356, 359, 362
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	148, 341
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	82, 224
Hin1I	GRCGYC	2 cut(s)	27, 222
Hin1II	CATG	4 cut(s)	178, 221, 244, 346
Hin6I	GCGC	2 cut(s)	80, 222
HinP1I	GCGC	2 cut(s)	80, 222
HincII	GTYRAC	2 cut(s)	76, 262
HindII	GTYRAC	2 cut(s)	76, 262
HpaI	GTTAAC	1 cut(s)	262
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	76, 262
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	76, 262
HpyCH4III	ACNGT	2 cut(s)	144, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 352, 355, 361
Hsp92I	GRCGYC	2 cut(s)	27, 222
Hsp92II	CATG	4 cut(s)	178, 221, 244, 346
HspAI	GCGC	2 cut(s)	80, 222
KasI	GGCGCC	1 cut(s)	221
KspAI	GTTAAC	1 cut(s)	262
LpnPI	CCDG	3 cut(s)	95, 220, 265
Lsp1109I	GCAGC	4 cut(s)	94, 333, 342, 345
LweI	GCATC	2 cut(s)	6, 297
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	251, 301
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	105, 113, 159, 382
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	233, 261
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	341
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	91, 352, 355, 361
NarI	GGCGCC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	4 cut(s)	178, 221, 244, 346
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	84, 348, 357, 360, 363
PluTI	GGCGCC	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	3 cut(s)	128, 135, 197
RsaNI	GTAC	3 cut(s)	127, 134, 196
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	233, 261
SatI	GCNGC	5 cut(s)	83, 347, 356, 359, 362
Sau96I	GGNCC	1 cut(s)	214
SetI	ASST	5 cut(s)	87, 209, 278, 301, 374
SfaNI	GCATC	2 cut(s)	6, 297
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	2 cut(s)	249, 362
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	144, 257
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	233, 261
Tru9I	TTAA	2 cut(s)	233, 261
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	4 cut(s)	82, 346, 355, 358
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.