Rorug02G0531500

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008934
Physical Location & Seq
Forward (+)
66143037 .. 66143324
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0531500.1

Sequence Viewer

Length: 288 bp
ATGGGTGCTATAGTTAAGGTAGTTGACGCTACACTGTGTTTGTTCTTCATCATAATGGCAGTTTCGCCTATGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTTCCGGGAGTGGATGGTGGATCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTCTATGTCGAGAAGCTTGATTTCTTTATCGGTCTAGTTTTGGTTGAGCTTGTGTTCAAGTGGCCTCTCGCCCTTGCCATCTTGTACGGGATGTTGGTGTTTGGCTCATGTAGATACCTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

95

Amino Acids

11.28

Weight (kDa)

5.12

Isoelectric Point (pI)

21.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 147
AclWI GGATC 1 cut(s) 132
AfaI GTAC 2 cut(s) 140, 248
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 3 cut(s) 102, 178, 211
AluI AGCT 3 cut(s) 102, 178, 211
Alw21I GWGCWC 1 cut(s) 78
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 82, 147
AsuC2I CCSGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 2 cut(s) 112, 248
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 2 cut(s) 197, 286
BfmI CTRYAG 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 123, 258
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 80, 147
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 2 cut(s) 80, 147
BspPI GGATC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 140
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 123, 258
BstFNI CGCG 2 cut(s) 80, 147
BstHHI GCGC 2 cut(s) 82, 147
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 2 cut(s) 80, 147
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 123, 258
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 2 cut(s) 82, 147
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 139, 247
CviAII CATG 2 cut(s) 142, 270
CviJI RGCY 5 cut(s) 102, 178, 211, 226, 267
CviKI_1 RGCY 5 cut(s) 102, 178, 211, 226, 267
CviQI GTAC 2 cut(s) 139, 247
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
FaeI CATG 2 cut(s) 145, 273
FaiI YATR 6 cut(s) 11, 53, 71, 143, 168, 271
FatI CATG 2 cut(s) 141, 269
FokI GGATG 2 cut(s) 130, 265
FspBI CTAG 2 cut(s) 197, 286
GlaI GCGC 2 cut(s) 81, 146
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 109
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 82, 147
Hin1II CATG 2 cut(s) 145, 273
Hin6I GCGC 2 cut(s) 80, 145
HinP1I GCGC 2 cut(s) 80, 145
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 176
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 25, 76
Hpy188I TCNGA 2 cut(s) 99, 129
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 2 cut(s) 25, 76
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 2 cut(s) 145, 273
HspAI GCGC 2 cut(s) 80, 145
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 121, 122
MaeI CTAG 2 cut(s) 197, 286
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 37, 97, 142
MhlI GDGCHC 1 cut(s) 78
MnlI CCTC 2 cut(s) 105, 237
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 80, 147
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 110
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 145, 273
NspI RCATGY 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 108
RsaI GTAC 2 cut(s) 140, 248
RsaNI GTAC 2 cut(s) 139, 247
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 21, 104, 180, 213, 282
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 53
SspMI CTAG 2 cut(s) 197, 286
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 153, 171
TaqII GACCGA 1 cut(s) 182
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 1 cut(s) 39
VneI GTGCAC 1 cut(s) 74
XceI RCATGY 1 cut(s) 145
XspI CTAG 2 cut(s) 197, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.