Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

24933872 .. 24936121

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G265800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACTTCTTTGGGGATTCTTCTACTTGGGTTTCTCTCAGTTGTCTCCTCTGTCAATGGGTACTATGGGGGCTGGTCCAATGCTCATGCAACCTTTTATGGAGGTGGTGATGCTTCAGGCACAATGGGTGGGGCTTGTGGCTATGGGAACCTGTACAGCCAGGGCTATGGGACTAACACAGCAGCACTAAGCACTGCATTGTTCAACAATGGCTTGAGCTGTGGGGCATGCTATGAGATCAGGTGTGTAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTGGTCACAGCGACAAACTTTTGCCCACCAGGTGGCTGGTGTGATCCTCCACAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCTGCACATTGCACAATACAGAGCTGGAGTTGTCCCTGTATCATACAGAAGGGTGAGATGCAAGAGAAGAGGAGGCATAAGGTTCACAGTGAATGGCCATTCGTACTTCAACTTAGTGCTTGTGACAAACGTTGGTGGTGCTGGAGATGTGCAGTCTGTGGCCATCAAGGGCTCTAGGACCCGGTGGCAACTAATGTCAAGAAACTGGGGGCAAAACTGGCAGAGCAACTCAAACCTAAATGGACAGAGCCTCTCTTTTCTTGTGACCACCAGTGATGGCCGCAGATTGGTTTCATATAACGTTGCCCCTCCTAATTGGTCATTTGGGCAGACATATACTGGGAGACAGTTTCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

242

Amino Acids

26.12

Weight (kDa)

9.32

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	264, 275
AccB7I	CCANNNNNTGG	1 cut(s)	314
AciI	CCGC	1 cut(s)	646
AclI	AACGTT	2 cut(s)	495, 666
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	3 cut(s)	460, 525, 643
AcuI	CTGAAG	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	62, 155, 470
AfiI	CCNNNNNNNGG	2 cut(s)	314, 652
AgsI	TTSAA	2 cut(s)	205, 475
AjnI	CCWGG	3 cut(s)	159, 271, 310
AleI	CACNNNNGTG	2 cut(s)	262, 281
AluBI	AGCT	2 cut(s)	219, 389
AluI	AGCT	2 cut(s)	219, 389
Alw26I	GTCTC	2 cut(s)	49, 703
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	460, 525, 643
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	75, 543
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	119, 430
AvaII	GGWCC	2 cut(s)	75, 543
BalI	TGGCCA	2 cut(s)	462, 527
BanI	GGYRCC	2 cut(s)	264, 275
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	536, 635
BciT130I	CCWGG	3 cut(s)	161, 273, 312
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	49, 703
BfaI	CTAG	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	2 cut(s)	183, 646
BlsI	GCNGC	2 cut(s)	184, 647
Bme1390I	CCNGG	4 cut(s)	161, 273, 312, 547
Bme18I	GGWCC	2 cut(s)	75, 543
BmgT120I	GGNCC	2 cut(s)	75, 543
BmiI	GGNNCC	4 cut(s)	149, 266, 277, 545
BmrFI	CCNGG	4 cut(s)	161, 273, 312, 547
BmrI	ACTGGG	2 cut(s)	580, 714
BmsI	GCATC	2 cut(s)	100, 413
BmuI	ACTGGG	2 cut(s)	580, 714
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	411, 528
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	160, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 652
Bse1I	ACTGG	4 cut(s)	575, 587, 636, 709
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	3 cut(s)	161, 273, 312
BseDI	CCNNGG	2 cut(s)	160, 271
BseLI	CCNNNNNNNGG	2 cut(s)	314, 652
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	51, 368
BseNI	ACTGG	4 cut(s)	575, 587, 636, 709
BseRI	GAGGAG	2 cut(s)	37, 450
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	2 cut(s)	353, 536
BshFI	GGCC	3 cut(s)	462, 527, 645
BshNI	GGYRCC	2 cut(s)	264, 275
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	2 cut(s)	184, 383
BslI	CCNNNNNNNGG	2 cut(s)	314, 652
BsmAI	GTCTC	2 cut(s)	49, 703
BsmFI	GGGAC	2 cut(s)	184, 383
BsnI	GGCC	3 cut(s)	462, 527, 645
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	237, 325, 346
BspACI	CCGC	1 cut(s)	646
BspANI	GGCC	3 cut(s)	462, 527, 645
BspCNI	CTCAG	2 cut(s)	50, 367
BspLI	GGNNCC	4 cut(s)	149, 266, 277, 545
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	2 cut(s)	264, 275
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	4 cut(s)	575, 587, 636, 709
BssECI	CCNNGG	2 cut(s)	160, 271
BssMI	GATC	3 cut(s)	237, 325, 346
Bst2UI	CCWGG	3 cut(s)	161, 273, 312
Bst4CI	ACNGT	3 cut(s)	261, 454, 714
Bst6I	CTCTTC	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	37, 188, 354, 478
BstKTI	GATC	3 cut(s)	240, 328, 349
BstMAI	GTCTC	2 cut(s)	49, 703
BstMBI	GATC	3 cut(s)	237, 325, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 583
BstNI	CCWGG	3 cut(s)	161, 273, 312
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	4 cut(s)	159, 271, 310, 545
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	355
BstXI	CCANNNNNNTGG	2 cut(s)	167, 318
BsuRI	GGCC	3 cut(s)	462, 527, 645
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	4 cut(s)	192, 266, 459, 643
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	75, 543
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	61, 154, 469
CviAII	CATG	2 cut(s)	86, 228
CviQI	GTAC	3 cut(s)	61, 154, 469
DdeI	CTNAG	4 cut(s)	37, 188, 354, 478
DpnI	GATC	3 cut(s)	239, 327, 348
DpnII	GATC	3 cut(s)	237, 325, 346
DraIII	CACNNNGTG	1 cut(s)	314
EaeI	YGGCCR	3 cut(s)	460, 525, 643
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	75, 543
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	159, 271, 310
EcoT38I	GRGCYC	1 cut(s)	539
FaeI	CATG	2 cut(s)	89, 231
FaqI	GGGAC	2 cut(s)	184, 383
FatI	CATG	2 cut(s)	85, 227
Fnu4HI	GCNGC	2 cut(s)	183, 646
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	183, 646
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	2 cut(s)	183, 646
GsuI	CTGGAG	2 cut(s)	411, 528
HaeIII	GGCC	3 cut(s)	462, 527, 645
HapII	CCGG	1 cut(s)	547
Hin1II	CATG	2 cut(s)	89, 231
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	2 cut(s)	119, 430
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	564
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	3 cut(s)	261, 454, 714
HpyCH4IV	ACGT	2 cut(s)	495, 666
HpyCH4V	TGCA	6 cut(s)	89, 197, 370, 377, 426, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 583
HpyF3I	CTNAG	4 cut(s)	37, 188, 354, 478
HpySE526I	ACGT	2 cut(s)	495, 666
Hsp92II	CATG	2 cut(s)	89, 231
Kzo9I	GATC	3 cut(s)	237, 325, 346
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	100, 413
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	495, 666
MaeIII	GTNAC	3 cut(s)	286, 487, 628
MalI	GATC	3 cut(s)	239, 327, 348
MboI	GATC	3 cut(s)	237, 325, 346
MboII	GAAGA	3 cut(s)	11, 355, 444
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	2 cut(s)	462, 527
MluCI	AATT	1 cut(s)	679
MluNI	TGGCCA	2 cut(s)	462, 527
MnlI	CCTC	8 cut(s)	58, 95, 278, 339, 428, 431, 626, 684
Mox20I	TGGCCA	2 cut(s)	462, 527
MscI	TGGCCA	2 cut(s)	462, 527
MseI	TTAA	1 cut(s)	724
MslI	CAYNNNNRTG	2 cut(s)	262, 281
Msp20I	TGGCCA	2 cut(s)	462, 527
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	4 cut(s)	161, 273, 312, 547
MvaI	CCWGG	3 cut(s)	161, 273, 312
MwoI	GCNNNNNNNGC	2 cut(s)	273, 583
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	237, 325, 346
NlaIII	CATG	2 cut(s)	89, 231
NlaIV	GGNNCC	4 cut(s)	149, 266, 277, 545
NmuCI	GTSAC	3 cut(s)	286, 487, 628
NspI	RCATGY	1 cut(s)	231
OliI	CACNNNNGTG	2 cut(s)	262, 281
PaeI	GCATGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	184, 647
PpuMI	RGGWCCY	1 cut(s)	543
Psp1406I	AACGTT	2 cut(s)	495, 666
Psp5II	RGGWCCY	1 cut(s)	543
Psp6I	CCWGG	3 cut(s)	159, 271, 310
PspGI	CCWGG	3 cut(s)	159, 271, 310
PspN4I	GGNNCC	4 cut(s)	149, 266, 277, 545
PspPI	GGNCC	2 cut(s)	75, 543
PspPPI	RGGWCCY	1 cut(s)	543
RsaI	GTAC	3 cut(s)	62, 155, 470
RsaNI	GTAC	3 cut(s)	61, 154, 469
RseI	CAYNNNNRTG	2 cut(s)	262, 281
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	2 cut(s)	183, 646
Sau3AI	GATC	3 cut(s)	237, 325, 346
Sau96I	GGNCC	2 cut(s)	75, 543
ScrFI	CCNGG	4 cut(s)	161, 273, 312, 547
SduI	GDGCHC	1 cut(s)	539
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	100, 413
SinI	GGWCC	2 cut(s)	75, 543
SmiMI	CAYNNNNRTG	2 cut(s)	262, 281
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	679
SsiI	CCGC	1 cut(s)	646
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	159, 271, 310, 545
TaaI	ACNGT	3 cut(s)	261, 454, 714
TaiI	ACGT	2 cut(s)	498, 669
TasI	AATT	1 cut(s)	679
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	4 cut(s)	199, 266, 459, 643
TseFI	GTSAC	3 cut(s)	286, 487, 628
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	3 cut(s)	286, 487, 628
TspDTI	ATGAA	1 cut(s)	648
TspRI	CASTG	4 cut(s)	199, 266, 459, 643
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	75, 543
XceI	RCATGY	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.