Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

26716957 .. 26718985

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1125400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTCCCAACAGCTCAAAAATTGTCAGCTGTTGTCATTTCAGGTGTGATGTTGACTGACTTCTATTTATTCTTCTTCAAAAATAATCAAACCCTCCCTCCCTGCCTCTTCATTTCCTCACCACTTCTTCATCTTATCAGCATTTCCTCACTGAAAATGGCTTTTTTCGGTATTCTTGTAATTGGGTTTCTCTCACTTGTCTCTTCTGTTAATGGCTACTATGGAGGTTGGTCCAATGCTCATGCAACCTTTTATGGAGGTGGTGATGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAACCTCTACAGCCAGGGCTATGGGACTAACACAGCAGCTCTAAGCACTGCATTGTTCAACAATGGCTTGACCTGTGGAGCATGCTATCAGATCAGGTGTGTGAATGACCCACAGTGGTGCCTCCCTGGCTCCATCATAGTTACTGCCACAAACTTTTGCCCACCAGGTGGCTGGTGCGACCCTCCCCAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCCCAATACAAAGCTGGGGTTGTCCCAGTGTCCTACAGAAGGGTTAGATGCAGGAGAAGAGGAGGCATAAGGTTCACTGTGAATGGACACTCTTACTTCAACTTAGTCCTTGTGACAAACGTCGGTGGTGCTGGAGATGTGCAATCTGTGGCCATCAAGGGCTCCAGGACTCGGTGGCAAGCAATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTATTGTGACCACCAGTGATGGCCGCAGATTGGTTTCTTACAATGTTGCCCCTCCGAATTGGTCATTTGGTCAGACATACACTGGGAGACAGTTTCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

294

Amino Acids

31.98

Weight (kDa)

9.53

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	81 - 195	2.7e-07	EXPB1-like domain 1
DPBB_1	PF03330	112 - 189	1.9e-23	Lytic transglycolase
Expansin_C	PF01357	200 - 277	1.5e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	470
AciI	CCGC	2 cut(s)	526, 802
AcoI	YGGCCR	2 cut(s)	681, 799
AdeI	CACNNNGTG	1 cut(s)	470
AfiI	CCNNNNNNNGG	4 cut(s)	470, 570, 702, 808
AgsI	TTSAA	3 cut(s)	79, 361, 631
AjnI	CCWGG	4 cut(s)	315, 427, 466, 695
AleI	CACNNNNGTG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	14, 29, 341, 545
AluI	AGCT	4 cut(s)	14, 29, 341, 545
Alw26I	GTCTC	2 cut(s)	205, 859
AoxI	GGCC	3 cut(s)	681, 730, 799
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	4, 231, 730
AsuHPI	GGTGA	2 cut(s)	111, 275
AvaII	GGWCC	2 cut(s)	4, 231
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	443, 692, 791
BciT130I	CCWGG	4 cut(s)	317, 429, 468, 697
BcoDI	GTCTC	2 cut(s)	205, 859
BfmI	CTRYAG	2 cut(s)	310, 565
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	2 cut(s)	339, 802
BlsI	GCNGC	2 cut(s)	340, 803
Bme1390I	CCNGG	4 cut(s)	317, 429, 468, 697
Bme18I	GGWCC	2 cut(s)	4, 231
BmgT120I	GGNCC	3 cut(s)	4, 231, 730
BmiI	GGNNCC	6 cut(s)	6, 305, 422, 433, 694, 731
BmrFI	CCNGG	4 cut(s)	317, 429, 468, 697
BmrI	ACTGGG	3 cut(s)	551, 736, 870
BmsI	GCATC	2 cut(s)	256, 569
BmuI	ACTGGG	3 cut(s)	551, 736, 870
BoxI	GACNNNNGTC	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	2 cut(s)	679, 684
BsaJI	CCNNGG	2 cut(s)	316, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	470, 570, 702, 808
Bse1I	ACTGG	5 cut(s)	557, 731, 743, 792, 865
Bse3DI	GCAATG	2 cut(s)	528, 720
BseBI	CCWGG	4 cut(s)	317, 429, 468, 697
BseDI	CCNNGG	2 cut(s)	316, 427
BseLI	CCNNNNNNNGG	4 cut(s)	470, 570, 702, 808
BseMI	GCAATG	2 cut(s)	528, 720
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	5 cut(s)	557, 731, 743, 792, 865
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	2 cut(s)	489, 545
BshFI	GGCC	3 cut(s)	683, 732, 801
BshNI	GGYRCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	340, 539
BslI	CCNNNNNNNGG	4 cut(s)	470, 570, 702, 808
BsmAI	GTCTC	2 cut(s)	205, 859
BsmFI	GGGAC	2 cut(s)	340, 539
BsnI	GGCC	3 cut(s)	683, 732, 801
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	2 cut(s)	393, 502
BspACI	CCGC	2 cut(s)	526, 802
BspANI	GGCC	3 cut(s)	683, 732, 801
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	6 cut(s)	6, 305, 422, 433, 694, 731
BspT107I	GGYRCC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	528, 720
BsrI	ACTGG	5 cut(s)	557, 731, 743, 792, 865
BssECI	CCNNGG	2 cut(s)	316, 427
BssMI	GATC	2 cut(s)	393, 502
Bst2UI	CCWGG	4 cut(s)	317, 429, 468, 697
Bst4CI	ACNGT	3 cut(s)	417, 610, 870
Bst6I	CTCTTC	3 cut(s)	113, 208, 583
BstC8I	GCNNGC	2 cut(s)	385, 711
BstDEI	CTNAG	3 cut(s)	344, 510, 634
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstKTI	GATC	2 cut(s)	396, 505
BstMAI	GTCTC	2 cut(s)	205, 859
BstMBI	GATC	2 cut(s)	393, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	4 cut(s)	317, 429, 468, 697
BstNSI	RCATGY	1 cut(s)	387
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	4 cut(s)	315, 427, 466, 695
BstSFI	CTRYAG	2 cut(s)	310, 565
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	511
BstXI	CCANNNNNNTGG	2 cut(s)	323, 474
BsuRI	GGCC	3 cut(s)	683, 732, 801
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	7 cut(s)	149, 348, 422, 564, 606, 799, 858
Cac8I	GCNNGC	2 cut(s)	385, 711
Cfr13I	GGNCC	3 cut(s)	4, 231, 730
CsiI	ACCWGGT	1 cut(s)	466
CviAII	CATG	2 cut(s)	242, 384
DdeI	CTNAG	3 cut(s)	344, 510, 634
DpnI	GATC	2 cut(s)	395, 504
DpnII	GATC	2 cut(s)	393, 502
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	681, 799
Eam1104I	CTCTTC	3 cut(s)	113, 208, 583
EarI	CTCTTC	3 cut(s)	113, 208, 583
Eco24I	GRGCYC	1 cut(s)	695
Eco47I	GGWCC	2 cut(s)	4, 231
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRII	CCWGG	4 cut(s)	315, 427, 466, 695
EcoT38I	GRGCYC	1 cut(s)	695
FaeI	CATG	2 cut(s)	245, 387
FaiI	YATR	9 cut(s)	222, 243, 255, 300, 324, 385, 440, 599, 856
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	2 cut(s)	340, 539
FatI	CATG	2 cut(s)	241, 383
Fnu4HI	GCNGC	2 cut(s)	339, 802
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	2 cut(s)	339, 802
GluI	GCNGC	2 cut(s)	339, 802
GsaI	CCCAGC	2 cut(s)	493, 549
GsuI	CTGGAG	2 cut(s)	679, 684
HaeIII	GGCC	3 cut(s)	683, 732, 801
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	2 cut(s)	245, 387
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	700
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	111, 275
Hpy166II	GTNNAC	2 cut(s)	54, 606
Hpy188I	TCNGA	3 cut(s)	393, 834, 852
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	2 cut(s)	54, 606
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	3 cut(s)	417, 610, 870
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	4 cut(s)	245, 353, 582, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	3 cut(s)	344, 510, 634
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	2 cut(s)	245, 387
Kzo9I	GATC	2 cut(s)	393, 502
LmnI	GCTCC	3 cut(s)	380, 437, 698
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	2 cut(s)	256, 569
MabI	ACCWGGT	1 cut(s)	466
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	3 cut(s)	442, 643, 784
MalI	GATC	2 cut(s)	395, 504
MboI	GATC	2 cut(s)	393, 502
MboII	GAAGA	7 cut(s)	64, 67, 100, 119, 195, 511, 600
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	4 cut(s)	20, 180, 748, 835
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	694
Mox20I	TGGCCA	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	418
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	4 cut(s)	317, 429, 468, 697
MvaI	CCWGG	4 cut(s)	317, 429, 468, 697
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeII	GATC	2 cut(s)	393, 502
NlaIII	CATG	2 cut(s)	245, 387
NlaIV	GGNNCC	6 cut(s)	6, 305, 422, 433, 694, 731
NmuCI	GTSAC	2 cut(s)	643, 784
NspI	RCATGY	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	695
PkrI	GCNGC	2 cut(s)	340, 803
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PshAI	GACNNNNGTC	1 cut(s)	650
Psp6I	CCWGG	4 cut(s)	315, 427, 466, 695
PspFI	CCCAGC	2 cut(s)	489, 545
PspGI	CCWGG	4 cut(s)	315, 427, 466, 695
PspN4I	GGNNCC	6 cut(s)	6, 305, 422, 433, 694, 731
PspPI	GGNCC	3 cut(s)	4, 231, 730
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	339, 802
Sau3AI	GATC	2 cut(s)	393, 502
Sau96I	GGNCC	3 cut(s)	4, 231, 730
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	4 cut(s)	317, 429, 468, 697
SduI	GDGCHC	1 cut(s)	695
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	256, 569
SfcI	CTRYAG	2 cut(s)	310, 565
SinI	GGWCC	2 cut(s)	4, 231
SmiMI	CAYNNNNRTG	1 cut(s)	418
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	4 cut(s)	20, 180, 748, 835
SsiI	CCGC	2 cut(s)	526, 802
StyD4I	CCNGG	4 cut(s)	315, 427, 466, 695
TaaI	ACNGT	3 cut(s)	417, 610, 870
TaiI	ACGT	1 cut(s)	654
TasI	AATT	4 cut(s)	20, 180, 748, 835
TauI	GCSGC	1 cut(s)	804
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	7 cut(s)	156, 355, 422, 564, 613, 799, 865
TseFI	GTSAC	2 cut(s)	643, 784
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	643, 784
TspDTI	ATGAA	2 cut(s)	100, 119
TspRI	CASTG	7 cut(s)	156, 355, 422, 564, 613, 799, 865
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	4, 231
XagI	CCTNNNNNAGG	1 cut(s)	568
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	471, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.