Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Forward (+)

77920876 .. 77922207

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTTCTTTGGGGATTCTTCTAATTGGGTTTGTGTCTATGCTCTCTTCTGTTAATGGCTATTATTATTCTGGTTGGTCCAATGCTCATGCAACCTTCTATGGAGGTGGTGATGCTTCTGGGACTATGGGTGGGGCTTGTGGCTATGGAAATTTATACAGCCAAGGCTATGGGACTAACACGGCAGCTCTAAGCACTGCCTTGTTCAACAATGGCTTGACCTGTGGAGCATGTTATGAGCTCAGGTGTGTAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTGGTCACTGCCACAAACTTCTGCCCGCCGGGGGGTTGGTGCGACCCTCCACAGCAACATTTTGATCTCTCTCAGCCCGTCTTCCTAAAGATTGCTCAGTACAGAGCCGGAGTTGTCCCTGTATCATACAGAAGGGTGAGATGCAGGAGAGCAGGAGGAATAAGGTTCACAGTGAATGGACACTCATACTTCAACCTAGTGCTGGTGACCAACGTCGGTGGTGCTGGAGATGTCCAATCTGTGGCCATTAAAGGCTCGAGAACCCGGTGGCAATTGATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGGCTCTCTTTTCTTGTCACAACCAGCGATGGCCGCAAATTGGTTTCTTACAATGTTGCTCCTCCCAATTGGTCATTTGGTCAGACATACACAGGAAGACAGTACCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

243

Amino Acids

26.41

Weight (kDa)

9.44

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	30 - 144	1.3e-07	EXPB1-like domain 1
DPBB_1	PF03330	61 - 138	5.7e-23	Lytic transglycolase
Expansin_C	PF01357	149 - 226	4.1e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	267, 278
AccB7I	CCANNNNNTGG	1 cut(s)	526
AciI	CCGC	3 cut(s)	311, 649, 721
AcoI	YGGCCR	2 cut(s)	528, 646
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	2 cut(s)	386, 719
AfiI	CCNNNNNNNGG	5 cut(s)	316, 317, 487, 526, 655
AgsI	TTSAA	2 cut(s)	208, 478
AjnI	CCWGG	1 cut(s)	274
AleI	CACNNNNGTG	2 cut(s)	265, 284
AluBI	AGCT	2 cut(s)	188, 241
AluI	AGCT	2 cut(s)	188, 241
Alw21I	GWGCWC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	3 cut(s)	528, 577, 646
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	78, 577
AsuC2I	CCSGG	2 cut(s)	315, 550
AsuHPI	GGTGA	3 cut(s)	122, 433, 502
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	2 cut(s)	267, 278
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	2 cut(s)	358, 718
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	638
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	315, 550
BfaI	CTAG	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	186, 649
BlsI	GCNGC	2 cut(s)	187, 650
Bme1390I	CCNGG	3 cut(s)	276, 315, 550
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	78, 577
BmiI	GGNNCC	3 cut(s)	269, 280, 578
BmrFI	CCNGG	3 cut(s)	276, 315, 550
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	2 cut(s)	103, 416
BmuI	ACTGGG	1 cut(s)	583
BoxI	GACNNNNGTC	1 cut(s)	497
BpiI	GAAGAC	2 cut(s)	358, 718
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	315, 550
BsaJI	CCNNGG	3 cut(s)	163, 274, 314
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 317, 487, 526, 655
Bse1I	ACTGG	2 cut(s)	578, 590
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	163, 274, 314
BseLI	CCNNNNNNNGG	5 cut(s)	316, 317, 487, 526, 655
BseMII	CTCAG	3 cut(s)	256, 371, 395
BseNI	ACTGG	2 cut(s)	578, 590
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	1 cut(s)	197
BshFI	GGCC	3 cut(s)	530, 579, 648
BshNI	GGYRCC	2 cut(s)	267, 278
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	314, 393, 550
BslFI	GGGAC	3 cut(s)	136, 187, 386
BslI	CCNNNNNNNGG	5 cut(s)	316, 317, 487, 526, 655
BsmFI	GGGAC	3 cut(s)	136, 187, 386
BsnI	GGCC	3 cut(s)	530, 579, 648
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	3 cut(s)	311, 649, 721
BspANI	GGCC	3 cut(s)	530, 579, 648
BspCNI	CTCAG	3 cut(s)	255, 370, 394
BspLI	GGNNCC	3 cut(s)	269, 280, 578
BspT107I	GGYRCC	2 cut(s)	267, 278
BsrI	ACTGG	2 cut(s)	578, 590
BssECI	CCNNGG	3 cut(s)	163, 274, 314
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	264, 457, 717
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	4 cut(s)	191, 242, 357, 381
BstEII	GGTNACC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 648
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	234
BstPAI	GACNNNNGTC	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	3 cut(s)	274, 313, 548
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	2 cut(s)	358, 718
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	530, 579, 648
BtgZI	GCGATG	1 cut(s)	657
BtsI	GCAGTG	2 cut(s)	195, 291
BtsIMutI	CAGTG	4 cut(s)	195, 269, 291, 462
Cac8I	GCNNGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	78, 577
Csp6I	GTAC	2 cut(s)	385, 718
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	89, 231
CviQI	GTAC	2 cut(s)	385, 718
DdeI	CTNAG	4 cut(s)	191, 242, 357, 381
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	528, 646
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	541
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	92, 234
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	3 cut(s)	136, 187, 386
FatI	CATG	2 cut(s)	88, 230
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	186, 649
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	186, 649
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	2 cut(s)	186, 649
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	530, 579, 648
HapII	CCGG	3 cut(s)	314, 393, 550
Hin1II	CATG	2 cut(s)	92, 234
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	314, 393, 550
HphI	GGTGA	3 cut(s)	122, 433, 502
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	699
Hpy188III	TCNNGA	2 cut(s)	543, 567
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	106, 411
HpyCH4III	ACNGT	3 cut(s)	264, 457, 717
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	2 cut(s)	92, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 648
HpyF3I	CTNAG	4 cut(s)	191, 242, 357, 381
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	92, 234
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	227, 679
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	103, 416
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	289, 490, 631
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	11, 39, 358, 723
MfeI	CAATTG	2 cut(s)	557, 682
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	6 cut(s)	24, 151, 557, 595, 653, 682
MluNI	TGGCCA	1 cut(s)	530
MnlI	CCTC	6 cut(s)	98, 281, 342, 434, 614, 687
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	3 cut(s)	54, 534, 727
MslI	CAYNNNNRTG	2 cut(s)	265, 284
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	3 cut(s)	314, 393, 550
MspR9I	CCNGG	3 cut(s)	276, 315, 550
MunI	CAATTG	2 cut(s)	557, 682
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	276, 648
NciI	CCSGG	2 cut(s)	315, 550
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	92, 234
NlaIV	GGNNCC	3 cut(s)	269, 280, 578
NmuCI	GTSAC	3 cut(s)	289, 490, 631
NspI	RCATGY	1 cut(s)	234
OliI	CACNNNNGTG	2 cut(s)	265, 284
PaeR7I	CTCGAG	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	187, 650
PshAI	GACNNNNGTC	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	269, 280, 578
PspPI	GGNCC	2 cut(s)	78, 577
RsaI	GTAC	2 cut(s)	386, 719
RsaNI	GTAC	2 cut(s)	385, 718
RseI	CAYNNNNRTG	2 cut(s)	265, 284
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	54, 534, 727
SatI	GCNGC	2 cut(s)	186, 649
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	2 cut(s)	78, 577
ScrFI	CCNGG	3 cut(s)	276, 315, 550
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	103, 416
Sfr274I	CTCGAG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	265, 284
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	6 cut(s)	24, 151, 557, 595, 653, 682
SsiI	CCGC	3 cut(s)	311, 649, 721
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	274, 313, 548
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	264, 457, 717
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	542
TasI	AATT	6 cut(s)	24, 151, 557, 595, 653, 682
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	54, 534, 727
Tru9I	TTAA	3 cut(s)	54, 534, 727
TscAI	CASTG	4 cut(s)	202, 269, 298, 462
TseFI	GTSAC	3 cut(s)	289, 490, 631
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	3 cut(s)	289, 490, 631
TspRI	CASTG	4 cut(s)	202, 269, 298, 462
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	234
XhoI	CTCGAG	1 cut(s)	541
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.