Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008934

Physical Location & Seq

Genomic Coordinates Reverse (-)

5961436 .. 5963357

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCTTTGGGGATTCTTCTAATTGGGTTTGCGTCTATGCTCTCTTCTGTTAATGGCTATTATTATGCTGGTTGGTCCAATGCTCATGCAACCTTCTATGGAGGTGGTGATGCTTCTGGGACTATGGGCGGGGCTTGTGGCTATGGAAATCTATACAGCCAAGGCTATGGGACTAACACAGCAGCTATAAGCACTGCTTTGTTCAACAATGGCTTGACTTGTGGAGCATGTTATGAGCTCAGGTGTGTAAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTGGTCACTGCCACAAACTTCTGCCCGCCGGGGGTTGGTGCGACCCTCCGCAGCAACATTTTGATCTCTCTCAGCCCGGTGAGATGCAGGAGAGCAGGAGGAATAAGGTTCACAGTGAATGGACACTCATACTTCAACCTAGTGCTGGTGACCAACGTCGGTGGTGCTGGAGATGTCCACTCTGTGGCCATTAAAGGCTCGAGAACCCGGTGGCAATTGATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTCTTGTCACAACCAGCGATGGCCGCAAATTGGTTTCTTACAATGTTGCTCCTCCCAATTGGTCATTTGGTCAGACATACACAGGAAGACAGTACCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

223

Amino Acids

23.89

Weight (kDa)

9.37

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	30 - 105	9.5e-06	EXPB1-like domain 1
DPBB_1	PF03330	61 - 120	1.2e-10	Lytic transglycolase
Expansin_C	PF01357	130 - 207	1.8e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29030
fragaria_vesca	FvH4_6g48210 FvH4_6g48210 FvH4_6g48210
malus_domestica	MD00G1125400.v1.1 MD09G1052900.v1.1
prunus_persica	Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1 Prupe.3G265800_v2.0.a1
pyrus_communis	pycom111g04410 pycom17g04830
rosa_chinensis	RchiOBHm_Chr2g0167701
rosa_laevigata	RLG00000021747
rosa_multiflora	Rmu_sc0002143.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083320
rosa_rugosa	Rorug02G0531500 Rorug02G0531600
rosa_samantha	Rh2AG600400 Rh2BG610900 Rh2CG581300 Rh2DG623600
rosa_wichuraiana	Rw2G049840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	267, 278
AccB7I	CCANNNNNTGG	1 cut(s)	469
AciI	CCGC	5 cut(s)	132, 311, 334, 592, 664
AcoI	YGGCCR	2 cut(s)	471, 589
AdeI	CACNNNGTG	1 cut(s)	469
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	5 cut(s)	316, 320, 430, 469, 598
AgsI	TTSAA	2 cut(s)	208, 421
AjnI	CCWGG	1 cut(s)	274
AleI	CACNNNNGTG	2 cut(s)	265, 284
AluBI	AGCT	2 cut(s)	188, 241
AluI	AGCT	2 cut(s)	188, 241
Alw21I	GWGCWC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	3 cut(s)	471, 520, 589
ApeKI	GCWGC	2 cut(s)	185, 336
AspS9I	GGNCC	2 cut(s)	78, 520
AsuC2I	CCSGG	3 cut(s)	315, 362, 493
AsuHPI	GGTGA	3 cut(s)	122, 376, 445
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	267, 278
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	197, 348
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	3 cut(s)	315, 362, 493
BfaI	CTAG	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	3 cut(s)	186, 337, 592
BlsI	GCNGC	3 cut(s)	187, 338, 593
Bme1390I	CCNGG	4 cut(s)	276, 315, 362, 493
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	78, 520
BmiI	GGNNCC	3 cut(s)	269, 280, 521
BmrFI	CCNGG	4 cut(s)	276, 315, 362, 493
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	103, 359
BmuI	ACTGGG	1 cut(s)	526
BoxI	GACNNNNGTC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	661
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	315, 362, 493
BsaJI	CCNNGG	3 cut(s)	163, 274, 314
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 320, 430, 469, 598
Bse1I	ACTGG	2 cut(s)	521, 533
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	163, 274, 314
BseLI	CCNNNNNNNGG	5 cut(s)	316, 320, 430, 469, 598
BseMII	CTCAG	2 cut(s)	256, 370
BseNI	ACTGG	2 cut(s)	521, 533
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	2 cut(s)	197, 348
BshFI	GGCC	3 cut(s)	473, 522, 591
BshNI	GGYRCC	2 cut(s)	267, 278
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	314, 362, 493
BslFI	GGGAC	2 cut(s)	136, 187
BslI	CCNNNNNNNGG	5 cut(s)	316, 320, 430, 469, 598
BsmFI	GGGAC	2 cut(s)	136, 187
BsnI	GGCC	3 cut(s)	473, 522, 591
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	5 cut(s)	132, 311, 334, 592, 664
BspANI	GGCC	3 cut(s)	473, 522, 591
BspCNI	CTCAG	2 cut(s)	255, 369
BspLI	GGNNCC	3 cut(s)	269, 280, 521
BspT107I	GGYRCC	2 cut(s)	267, 278
BsrI	ACTGG	2 cut(s)	521, 533
BssECI	CCNNGG	3 cut(s)	163, 274, 314
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	264, 400, 660
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	242, 356
BstEII	GGTNACC	1 cut(s)	433
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 591
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	234
BstPAI	GACNNNNGTC	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	4 cut(s)	274, 313, 360, 491
BstV1I	GCAGC	2 cut(s)	197, 348
BstV2I	GAAGAC	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	473, 522, 591
BtgZI	GCGATG	1 cut(s)	600
BtsI	GCAGTG	2 cut(s)	195, 291
BtsIMutI	CAGTG	4 cut(s)	195, 269, 291, 405
Cac8I	GCNNGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	78, 520
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	2 cut(s)	89, 231
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	242, 356
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraIII	CACNNNGTG	1 cut(s)	469
EaeI	YGGCCR	2 cut(s)	471, 589
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	92, 234
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 550, 582
FaqI	GGGAC	2 cut(s)	136, 187
FatI	CATG	2 cut(s)	88, 230
FauI	CCCGC	2 cut(s)	125, 318
Fnu4HI	GCNGC	3 cut(s)	186, 337, 592
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	186, 337, 592
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	3 cut(s)	186, 337, 592
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	3 cut(s)	473, 522, 591
HapII	CCGG	3 cut(s)	314, 362, 493
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	92, 234
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	314, 362, 493
HphI	GGTGA	3 cut(s)	122, 376, 445
Hpy166II	GTNNAC	2 cut(s)	396, 463
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	2 cut(s)	486, 510
Hpy8I	GTNNAC	2 cut(s)	396, 463
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	264, 400, 660
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	2 cut(s)	92, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 591
HpyF3I	CTNAG	2 cut(s)	242, 356
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	92, 234
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	227, 622
Lsp1109I	GCAGC	2 cut(s)	197, 348
LweI	GCATC	2 cut(s)	103, 359
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	289, 433, 574
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	3 cut(s)	11, 39, 666
MfeI	CAATTG	2 cut(s)	500, 625
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	5 cut(s)	24, 500, 538, 596, 625
MluNI	TGGCCA	1 cut(s)	473
MnlI	CCTC	7 cut(s)	98, 281, 341, 377, 557, 572, 630
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	54, 477, 670
MslI	CAYNNNNRTG	2 cut(s)	265, 284
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	3 cut(s)	314, 362, 493
MspR9I	CCNGG	4 cut(s)	276, 315, 362, 493
MunI	CAATTG	2 cut(s)	500, 625
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	276, 591
NciI	CCSGG	3 cut(s)	315, 362, 493
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	92, 234
NlaIV	GGNNCC	3 cut(s)	269, 280, 521
NmuCI	GTSAC	3 cut(s)	289, 433, 574
NspI	RCATGY	1 cut(s)	234
OliI	CACNNNNGTG	2 cut(s)	265, 284
PaeR7I	CTCGAG	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	187, 338, 593
PshAI	GACNNNNGTC	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	269, 280, 521
PspPI	GGNCC	2 cut(s)	78, 520
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	265, 284
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	54, 477, 670
SatI	GCNGC	3 cut(s)	186, 337, 592
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	78, 520
ScrFI	CCNGG	4 cut(s)	276, 315, 362, 493
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	9 cut(s)	98, 109, 190, 243, 248, 395, 426, 444, 549
SfaNI	GCATC	2 cut(s)	103, 359
Sfr274I	CTCGAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	265, 284
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	5 cut(s)	24, 500, 538, 596, 625
SsiI	CCGC	5 cut(s)	132, 311, 334, 592, 664
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	274, 313, 360, 491
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	264, 400, 660
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	485
TasI	AATT	5 cut(s)	24, 500, 538, 596, 625
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	54, 477, 670
Tru9I	TTAA	3 cut(s)	54, 477, 670
TscAI	CASTG	4 cut(s)	202, 269, 298, 405
TseFI	GTSAC	3 cut(s)	289, 433, 574
TseI	GCWGC	2 cut(s)	185, 336
Tsp45I	GTSAC	3 cut(s)	289, 433, 574
TspRI	CASTG	4 cut(s)	202, 269, 298, 405
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	234
XhoI	CTCGAG	1 cut(s)	484
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.