Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Forward (+)

11648096 .. 11650980

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGAAACCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAAGAAAAGAAAACCCATCACAAAAAGACAATCTTCTATCGGAGCTTCTTCTTCCGGGTCGGGTCTTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGTTCGAAGATGCTTTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGCAAAACGGTGGTGGAGGATCGTTGCCGTTTGATCGGTCGGCTTCACAACGTTATCAAGGTTCTTGTTCGAAGAAGAACCAGTTGCCTCGAAGCTCGAGTTCGAGGTCAAGGTCTTCTACAGATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTATAAAGCTAGATGACTTGGAAACAAACCATTTTGTCCTTGTTCATGGAGGTAGTTTTGGCGCTTGGTGTTGGTATAAAACCATTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCAGGTTGCGGTATTAACTCGATTAATATAAATGGCATCGCTAGTTTGTCACAATATGTCAAGCCACTTACCGATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATATTGGTCGGTCACGATTTTGGTGGAGCATGTATATCTTATGCTATGGAACTCTTTCCTTCAAAGATTTCGAAAGCGGTTTTCCTCGCTGCAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAGGCCGGTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACCCTCCAACCGCAATTGACTTAGACAAATCTCTTCTCAAAGACCTTTTGTTCAACCAAAGCCCTTCGAAGGACGTTGCATTGGCTTCTGTATCAATGAGGTCAATTCCATTTGCGCCGGTTCTTGAAAAACTCTCTCTTTCGGATGCTAACTACGGATCAGTTAGACGGTACTATATAGAGACGTTAGAAGACAATGCTATACCAGTGACTCTTCAAGAAAACATGATCAATAGTAGTCCTCCTGAAAAGGTTTATCGGTTAAAAGGCGCCGACCATGCTCCTTTCTTTTCCAAACCACAAGCTTTGCATAAACTTCTGCTTGAGATCGCCAGAATTAGCCCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

390

Amino Acids

42.66

Weight (kDa)

9.36

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	137 - 247	5.2e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	139 - 377	2.6e-18	Alpha/beta hydrolase family
Hydrolase_4	PF12146	139 - 246	1.5e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	1091
AciI	CCGC	5 cut(s)	29, 501, 522, 698, 834
AclI	AACGTT	1 cut(s)	274
AclWI	GGATC	3 cut(s)	250, 341, 988
AcyI	GRCGYC	1 cut(s)	1092
AfaI	GTAC	2 cut(s)	739, 995
AfiI	CCNNNNNNNGG	1 cut(s)	892
AgsI	TTSAA	7 cut(s)	185, 596, 684, 760, 877, 950, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AluBI	AGCT	6 cut(s)	86, 318, 391, 601, 791, 1127
AluI	AGCT	6 cut(s)	86, 318, 391, 601, 791, 1127
Alw26I	GTCTC	2 cut(s)	150, 998
AlwI	GGATC	3 cut(s)	250, 341, 988
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	762
ApeKI	GCWGC	5 cut(s)	200, 203, 206, 710, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AseI	ATTAAT	1 cut(s)	537
Asp700I	GAANNNNTTC	2 cut(s)	600, 675
AspLEI	GCGC	3 cut(s)	446, 940, 1094
AsuC2I	CCSGG	2 cut(s)	97, 131
AsuHPI	GGTGA	1 cut(s)	631
AsuII	TTCGAA	4 cut(s)	168, 293, 692, 890
AvaI	CYCGRG	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	1091
BbsI	GAAGAC	2 cut(s)	330, 1020
BbvI	GCAGC	5 cut(s)	187, 190, 193, 697, 725
BccI	CCATC	2 cut(s)	65, 479
BceAI	ACGGC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	1050
BcnI	CCSGG	2 cut(s)	97, 131
BcoDI	GTCTC	2 cut(s)	150, 998
BfaI	CTAG	3 cut(s)	150, 392, 555
BfmI	CTRYAG	3 cut(s)	342, 504, 711
BfoI	RGCGCY	2 cut(s)	447, 1095
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	5 cut(s)	201, 204, 207, 711, 714
BlsI	GCNGC	5 cut(s)	202, 205, 208, 712, 715
Bme1390I	CCNGG	2 cut(s)	97, 131
BmeT110I	CYCGRG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	1093
BmrFI	CCNGG	2 cut(s)	97, 131
BmsI	GCATC	3 cut(s)	163, 558, 958
BpiI	GAAGAC	2 cut(s)	330, 1020
BplI	GAGNNNNNCTC	2 cut(s)	775, 807
Bpu14I	TTCGAA	4 cut(s)	168, 293, 692, 890
BpuEI	CTTGAG	2 cut(s)	497, 1166
BpuMI	CCSGG	2 cut(s)	97, 131
BsaBI	GATNNNNATC	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	1092
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	892
Bse118I	RCCGGY	2 cut(s)	764, 940
Bse1I	ACTGG	2 cut(s)	304, 1028
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	800
BseGI	GGATG	1 cut(s)	973
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	1 cut(s)	892
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	2 cut(s)	304, 1028
BseXI	GCAGC	5 cut(s)	187, 190, 193, 697, 725
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	764
BshNI	GGYRCC	1 cut(s)	1091
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	4 cut(s)	96, 130, 765, 941
BslI	CCNNNNNNNGG	1 cut(s)	892
BsmAI	GTCTC	2 cut(s)	150, 998
BsmBI	CGTCTC	1 cut(s)	998
BsnI	GGCC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	319
Bsp119I	TTCGAA	4 cut(s)	168, 293, 692, 890
Bsp143I	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
BspACI	CCGC	5 cut(s)	29, 501, 522, 698, 834
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	1093
BspMAI	CTGCAG	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	3 cut(s)	250, 341, 988
BspT104I	TTCGAA	4 cut(s)	168, 293, 692, 890
BspT107I	GGYRCC	1 cut(s)	1091
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	2 cut(s)	764, 940
BsrI	ACTGG	2 cut(s)	304, 1028
BssAI	RCCGGY	2 cut(s)	764, 940
BssMI	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
BssNI	GRCGYC	1 cut(s)	1092
Bst4CI	ACNGT	3 cut(s)	119, 233, 993
Bst6I	CTCTTC	3 cut(s)	148, 861, 1041
BstACI	GRCGYC	1 cut(s)	1092
BstBI	TTCGAA	4 cut(s)	168, 293, 692, 890
BstDEI	CTNAG	3 cut(s)	511, 792, 844
BstF5I	GGATG	1 cut(s)	973
BstH2I	RGCGCY	2 cut(s)	447, 1095
BstHHI	GCGC	3 cut(s)	446, 940, 1094
BstKTI	GATC	7 cut(s)	140, 245, 259, 349, 983, 1053, 1152
BstMAI	GTCTC	2 cut(s)	150, 998
BstMBI	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 206, 1100
BstNSI	RCATGY	2 cut(s)	194, 654
BstSCI	CCNGG	2 cut(s)	95, 129
BstSFI	CTRYAG	3 cut(s)	342, 504, 711
BstV1I	GCAGC	5 cut(s)	187, 190, 193, 697, 725
BstV2I	GAAGAC	2 cut(s)	330, 1020
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	764
BtgZI	GCGATG	2 cut(s)	535, 731
BtsCI	GGATG	1 cut(s)	973
BtsIMutI	CAGTG	1 cut(s)	1035
BveI	ACCTGC	1 cut(s)	506
CfoI	GCGC	3 cut(s)	446, 940, 1094
Cfr10I	RCCGGY	2 cut(s)	764, 940
Csp6I	GTAC	2 cut(s)	738, 994
CspCI	CAANNNNNGTGG	2 cut(s)	1110, 1145
CviAII	CATG	5 cut(s)	191, 428, 651, 1048, 1100
CviQI	GTAC	2 cut(s)	738, 994
DdeI	CTNAG	3 cut(s)	511, 792, 844
DinI	GGCGCC	1 cut(s)	1093
DpnI	GATC	7 cut(s)	139, 244, 258, 348, 982, 1052, 1151
DpnII	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
DraI	TTTAAA	1 cut(s)	493
Eam1104I	CTCTTC	3 cut(s)	148, 861, 1041
EarI	CTCTTC	3 cut(s)	148, 861, 1041
EciI	GGCGGA	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	319
EgeI	GGCGCC	1 cut(s)	1093
EheI	GGCGCC	1 cut(s)	1093
Esp3I	CGTCTC	1 cut(s)	998
FaeI	CATG	5 cut(s)	194, 431, 654, 1051, 1103
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	5 cut(s)	190, 427, 650, 1047, 1099
FbaI	TGATCA	1 cut(s)	1050
Fnu4HI	GCNGC	5 cut(s)	201, 204, 207, 711, 714
FokI	GGATG	1 cut(s)	980
Fsp4HI	GCNGC	5 cut(s)	201, 204, 207, 711, 714
FspBI	CTAG	3 cut(s)	150, 392, 555
GlaI	GCGC	3 cut(s)	445, 939, 1093
GluI	GCNGC	5 cut(s)	201, 204, 207, 711, 714
HaeII	RGCGCY	2 cut(s)	447, 1095
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	4 cut(s)	96, 130, 765, 941
HhaI	GCGC	3 cut(s)	446, 940, 1094
Hin1I	GRCGYC	1 cut(s)	1092
Hin1II	CATG	5 cut(s)	194, 431, 654, 1051, 1103
Hin6I	GCGC	3 cut(s)	444, 938, 1092
HinP1I	GCGC	3 cut(s)	444, 938, 1092
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	2 cut(s)	599, 1125
HinfI	GANTC	2 cut(s)	181, 1033
HpaI	GTTAAC	1 cut(s)	723
HpaII	CCGG	4 cut(s)	96, 130, 765, 941
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	3 cut(s)	24, 723, 740
Hpy188I	TCNGA	6 cut(s)	83, 137, 221, 771, 795, 967
Hpy188III	TCNNGA	8 cut(s)	150, 185, 476, 593, 635, 947, 1040, 1067
Hpy8I	GTNNAC	3 cut(s)	24, 723, 740
HpyAV	CCTTC	5 cut(s)	610, 690, 754, 886, 897
HpyCH4III	ACNGT	3 cut(s)	119, 233, 993
HpyCH4IV	ACGT	3 cut(s)	274, 897, 1007
HpyCH4V	TGCA	4 cut(s)	470, 713, 902, 1132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 206, 1100
HpyF3I	CTNAG	3 cut(s)	511, 792, 844
HpySE526I	ACGT	3 cut(s)	274, 897, 1007
Hsp92I	GRCGYC	1 cut(s)	1092
Hsp92II	CATG	5 cut(s)	194, 431, 654, 1051, 1103
HspAI	GCGC	3 cut(s)	444, 938, 1092
KasI	GGCGCC	1 cut(s)	1091
Ksp22I	TGATCA	1 cut(s)	1050
KspAI	GTTAAC	1 cut(s)	723
Kzo9I	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
LmnI	GCTCC	3 cut(s)	83, 647, 1108
Lsp1109I	GCAGC	5 cut(s)	187, 190, 193, 697, 725
LweI	GCATC	3 cut(s)	163, 558, 958
MaeI	CTAG	3 cut(s)	150, 392, 555
MaeII	ACGT	3 cut(s)	274, 897, 1007
MaeIII	GTNAC	6 cut(s)	113, 354, 496, 561, 632, 1030
MalI	GATC	7 cut(s)	139, 244, 258, 348, 982, 1052, 1151
MboI	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	3 cut(s)	837, 927, 1158
Mly113I	GGCGCC	1 cut(s)	1092
MlyI	GAGTC	1 cut(s)	1027
MmeI	TCCRAC	3 cut(s)	101, 244, 854
MroXI	GAANNNNTTC	2 cut(s)	600, 675
MseI	TTAA	9 cut(s)	108, 375, 492, 528, 537, 722, 779, 1085, 1171
MspI	CCGG	4 cut(s)	96, 130, 765, 941
MspR9I	CCNGG	2 cut(s)	97, 131
MunI	CAATTG	1 cut(s)	837
MwoI	GCNNNNNNNGC	3 cut(s)	200, 206, 1100
NarI	GGCGCC	1 cut(s)	1092
NciI	CCSGG	2 cut(s)	97, 131
NdeII	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
NlaIII	CATG	5 cut(s)	194, 431, 654, 1051, 1103
NlaIV	GGNNCC	1 cut(s)	1093
NmuCI	GTSAC	3 cut(s)	561, 632, 1030
NspI	RCATGY	2 cut(s)	194, 654
NspV	TTCGAA	4 cut(s)	168, 293, 692, 890
PaeR7I	CTCGAG	1 cut(s)	319
PdmI	GAANNNNTTC	2 cut(s)	600, 675
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	202, 205, 208, 712, 715
PleI	GAGTC	1 cut(s)	1027
PluTI	GGCGCC	1 cut(s)	1095
PpsI	GAGTC	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	1093
PspXI	VCTCGAGB	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	739, 995
RsaNI	GTAC	2 cut(s)	738, 994
SaqAI	TTAA	9 cut(s)	108, 375, 492, 528, 537, 722, 779, 1085, 1171
SatI	GCNGC	5 cut(s)	201, 204, 207, 711, 714
Sau3AI	GATC	7 cut(s)	137, 242, 256, 346, 980, 1050, 1149
SchI	GAGTC	1 cut(s)	1027
ScrFI	CCNGG	2 cut(s)	97, 131
SfaNI	GCATC	3 cut(s)	163, 558, 958
SfcI	CTRYAG	3 cut(s)	342, 504, 711
SfoI	GGCGCC	1 cut(s)	1093
Sfr274I	CTCGAG	1 cut(s)	319
SfuI	TTCGAA	4 cut(s)	168, 293, 692, 890
SlaI	CTCGAG	1 cut(s)	319
SmlI	CTYRAG	3 cut(s)	319, 476, 1145
SmoI	CTYRAG	3 cut(s)	319, 476, 1145
Sse9I	AATT	3 cut(s)	837, 927, 1158
SsiI	CCGC	5 cut(s)	29, 501, 522, 698, 834
SspDI	GGCGCC	1 cut(s)	1091
SspMI	CTAG	3 cut(s)	150, 392, 555
StyD4I	CCNGG	2 cut(s)	95, 129
TaaI	ACNGT	3 cut(s)	119, 233, 993
TaiI	ACGT	3 cut(s)	277, 900, 1010
TaqI	TCGA	9 cut(s)	168, 293, 313, 320, 326, 533, 692, 744, 890
TaqII	GACCGA	2 cut(s)	249, 620
TasI	AATT	3 cut(s)	837, 927, 1158
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	9 cut(s)	108, 375, 492, 528, 537, 722, 779, 1085, 1171
Tru9I	TTAA	9 cut(s)	108, 375, 492, 528, 537, 722, 779, 1085, 1171
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	3 cut(s)	561, 632, 1030
TseI	GCWGC	5 cut(s)	200, 203, 206, 710, 713
Tsp45I	GTSAC	3 cut(s)	561, 632, 1030
TspDTI	ATGAA	2 cut(s)	416, 834
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	1 cut(s)	1035
VspI	ATTAAT	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	2 cut(s)	194, 654
XhoI	CTCGAG	1 cut(s)	319
XmnI	GAANNNNTTC	2 cut(s)	600, 675
XspI	CTAG	3 cut(s)	150, 392, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.