Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Reverse (-)

24183708 .. 24187159

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCAACCTCTGCGCCTGCCTCGCAACCCAACCCGTGAAGAAAAAACCCATAAAGCGCCTCCCCAACCCGCCACCGCAATCCAATACCAGCAACCGGTGGACCCGGATCCGATCCTCCAGAAAAGAGAAGCTCGACGACGCTTTGCTCCAAGAACAAGCTCTCGCCGCCGCGATTCTGTTCCAGCAGCACCAGCAGAACGGTTCTTTGCCCTTTGATCGCTCTGCTTCGCTGCGGTACCCGAATTCGAGCTCCAAGAAGAGCAGCAACGCCTTGCCCCGTAGCTCCAGCTCTCGGGCTCGGTCCCTCACCGACCCTCTTCTCCAGCCTCACCAGCTTGTTAACCAGGATGTAAAGCTTGATGATCTGGAAACCAACCATTTTGTCCTTGTACATGGAGGTGGCTTTGGTGCTTGGTGTTGGTATAAAACCATAGCACTTCTGGAGGAGGTTGGTTTTAAAGTTACTGCCATAGACTTGACTGGCTCTGGAATTCATTCATCTGATGCAAACAGTGTCACAAGTCTTTCTCAATATGTGAAGCCTCTTACTGATTTTCTTGAAAACCTTCCCGAGGGAAATAAGGTAATCTTGGTGGGTCATGATTTTGGTGGTGCATGCATATCATACGCAATGGAGTTGTTTCCACATAAAGTTTCAAAGGCCATTTTTATTGCTGCAGCAATGTTGAAAAATGGACAAAGTACTCTTGAAATGTTCTCCCAACAGGCCACTTCAGATGATCTTATGCGACAGGCTCAGATATTTTTGTATGCAAATGGGAATAATCAGCCTCCAACTGCTATTGATTTAGATAAATCAATGTTAAAGGATTTGTTATTCAACCAAAGTCCTGCCAAGGATGTCGCATTGGCATCTGTTTCGATGAGGCCAATTCCCTTTGCCCCAGTTCTGGAGAAGCTTTCACTTTCGGATTTGAAATATGGATCGGTGAGGCGGTTTTATATAGAAACATCAGAAGACAATGCCATACCCATCACAGTCCAGGAGCGCATGACAAAAGAAAGCCCTCCTGAACAGGTCCTTCGCTTGAAGGGTGCCGATCACTCACCTTTTTTCTCAAAGCCCCAAGCCCTGCACAAGTTATTGGTGGAGATCTCAAAGATTTCTTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

380

Amino Acids

41.83

Weight (kDa)

9.0

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 1058
AccII	CGCG	1 cut(s)	173
AciI	CCGC	6 cut(s)	71, 77, 168, 171, 235, 958
AclWI	GGATC	4 cut(s)	103, 108, 116, 955
AcsI	RAATTY	2 cut(s)	244, 492
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	3 cut(s)	239, 393, 706
AfiI	CCNNNNNNNGG	4 cut(s)	96, 294, 574, 913
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	7 cut(s)	563, 660, 691, 713, 844, 940, 1054
AjnI	CCWGG	2 cut(s)	345, 1005
AluBI	AGCT	8 cut(s)	133, 161, 252, 285, 291, 337, 358, 922
AluI	AGCT	8 cut(s)	133, 161, 252, 285, 291, 337, 358, 922
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	4 cut(s)	103, 108, 116, 955
Ama87I	CYCGRG	2 cut(s)	294, 572
AoxI	GGCC	3 cut(s)	663, 729, 890
ApeKI	GCWGC	5 cut(s)	187, 232, 264, 677, 680
ApoI	RAATTY	2 cut(s)	244, 492
AsiGI	ACCGGT	1 cut(s)	96
Asp700I	GAANNNNTTC	2 cut(s)	496, 567
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	3 cut(s)	17, 60, 1014
AspS9I	GGNCC	3 cut(s)	102, 303, 1042
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	4 cut(s)	301, 323, 964, 1062
AvaI	CYCGRG	2 cut(s)	294, 572
AvaII	GGWCC	3 cut(s)	102, 303, 1042
BamHI	GGATCC	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	237, 1058
BanII	GRGCYC	2 cut(s)	254, 301
BbsI	GAAGAC	1 cut(s)	987
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	199, 219, 276, 664, 692
BccI	CCATC	1 cut(s)	1004
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BciT130I	CCWGG	2 cut(s)	347, 1007
BcnI	CCSGG	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	1 cut(s)	1116
BisI	GCNGC	7 cut(s)	168, 171, 188, 233, 265, 678, 681
BlsI	GCNGC	7 cut(s)	169, 172, 189, 234, 266, 679, 682
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	3 cut(s)	106, 347, 1007
Bme18I	GGWCC	3 cut(s)	102, 303, 1042
BmeT110I	CYCGRG	2 cut(s)	294, 572
BmgT120I	GGNCC	3 cut(s)	102, 303, 1042
BmiI	GGNNCC	5 cut(s)	104, 110, 239, 305, 1060
BmrFI	CCNGG	3 cut(s)	106, 347, 1007
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	2 cut(s)	496, 884
BmuI	ACTGGG	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	987
BpmI	CTGGAG	5 cut(s)	103, 271, 308, 464, 935
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	573, 858
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 294, 574, 913
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	487, 908
Bse3DI	GCAATG	2 cut(s)	639, 690
BseBI	CCWGG	2 cut(s)	347, 1007
BseDI	CCNNGG	2 cut(s)	573, 858
BseGI	GGATG	2 cut(s)	355, 868
BseLI	CCNNNNNNNGG	4 cut(s)	96, 294, 574, 913
BseMI	GCAATG	2 cut(s)	639, 690
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	2 cut(s)	487, 908
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	5 cut(s)	199, 219, 276, 664, 692
BsgI	GTGCAG	1 cut(s)	1082
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	665, 731, 892
BshNI	GGYRCC	2 cut(s)	237, 1058
BshTI	ACCGGT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	2 cut(s)	294, 572
BsiSI	CCGG	2 cut(s)	97, 106
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	4 cut(s)	96, 294, 574, 913
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	665, 731, 892
BsoBI	CYCGRG	2 cut(s)	294, 572
Bsp1286I	GDGCHC	2 cut(s)	254, 301
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
BspACI	CCGC	6 cut(s)	71, 77, 168, 171, 235, 958
BspANI	GGCC	3 cut(s)	665, 731, 892
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	5 cut(s)	104, 110, 239, 305, 1060
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	4 cut(s)	103, 108, 116, 955
BspQI	GCTCTTC	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	237, 1058
BsrDI	GCAATG	2 cut(s)	639, 690
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	487, 908
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	573, 858
BssMI	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
BssT1I	CCWWGG	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	347, 1007
Bst4CI	ACNGT	3 cut(s)	203, 515, 1003
Bst6I	CTCTTC	2 cut(s)	254, 324
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	19, 619
BstDEI	CTNAG	2 cut(s)	759, 1137
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	355, 868
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	3 cut(s)	17, 60, 1014
BstKTI	GATC	8 cut(s)	111, 116, 220, 367, 745, 950, 1066, 1119
BstMBI	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 23, 167, 193, 334
BstNI	CCWGG	2 cut(s)	347, 1007
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	3 cut(s)	104, 345, 1005
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	5 cut(s)	199, 219, 276, 664, 692
BstV2I	GAAGAC	1 cut(s)	987
BstX2I	RGATCY	2 cut(s)	108, 1116
BstYI	RGATCY	2 cut(s)	108, 1116
BsuRI	GGCC	3 cut(s)	665, 731, 892
BtsCI	GGATG	2 cut(s)	355, 868
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	19, 619
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	3 cut(s)	17, 60, 1014
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	102, 303, 1042
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	238, 392, 705
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	4 cut(s)	395, 602, 618, 1015
CviQI	GTAC	3 cut(s)	238, 392, 705
DdeI	CTNAG	2 cut(s)	759, 1137
DpnI	GATC	8 cut(s)	110, 115, 219, 366, 744, 949, 1065, 1118
DpnII	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
DraI	TTTAAA	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	254, 324
EarI	CTCTTC	2 cut(s)	254, 324
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	858
Eco24I	GRGCYC	2 cut(s)	254, 301
Eco47I	GGWCC	3 cut(s)	102, 303, 1042
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	720
Eco88I	CYCGRG	2 cut(s)	294, 572
EcoICRI	GAGCTC	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	1042
EcoRI	GAATTC	2 cut(s)	244, 492
EcoRII	CCWGG	2 cut(s)	345, 1005
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	623
EcoT38I	GRGCYC	2 cut(s)	254, 301
ErhI	CCWWGG	1 cut(s)	858
FaeI	CATG	4 cut(s)	398, 605, 621, 1018
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	4 cut(s)	394, 601, 617, 1014
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	7 cut(s)	168, 171, 188, 233, 265, 678, 681
FokI	GGATG	2 cut(s)	362, 875
FriOI	GRGCYC	2 cut(s)	254, 301
Fsp4HI	GCNGC	7 cut(s)	168, 171, 188, 233, 265, 678, 681
GlaI	GCGC	3 cut(s)	16, 59, 1013
GluI	GCNGC	7 cut(s)	168, 171, 188, 233, 265, 678, 681
GsuI	CTGGAG	5 cut(s)	103, 271, 308, 464, 935
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	665, 731, 892
HapII	CCGG	2 cut(s)	97, 106
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	3 cut(s)	17, 60, 1014
Hin1II	CATG	4 cut(s)	398, 605, 621, 1018
Hin6I	GCGC	3 cut(s)	15, 58, 1012
HinP1I	GCGC	3 cut(s)	15, 58, 1012
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	356, 920
HinfI	GANTC	1 cut(s)	175
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	2 cut(s)	97, 106
HphI	GGTGA	4 cut(s)	301, 323, 964, 1062
Hpy166II	GTNNAC	2 cut(s)	102, 343
Hpy188I	TCNGA	6 cut(s)	113, 505, 739, 762, 934, 979
Hpy8I	GTNNAC	2 cut(s)	102, 343
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyAV	CCTTC	3 cut(s)	578, 1048, 1055
HpyCH4III	ACNGT	3 cut(s)	203, 515, 1003
HpyCH4V	TGCA	6 cut(s)	509, 617, 621, 680, 776, 1099
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 23, 167, 193, 334
HpyF3I	CTNAG	2 cut(s)	759, 1137
Hsp92II	CATG	4 cut(s)	398, 605, 621, 1018
HspAI	GCGC	3 cut(s)	15, 58, 1012
KpnI	GGTACC	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	4 cut(s)	153, 257, 290, 1009
Lsp1109I	GCAGC	5 cut(s)	199, 219, 276, 664, 692
LweI	GCATC	2 cut(s)	496, 884
MaeIII	GTNAC	2 cut(s)	463, 517
MalI	GATC	8 cut(s)	110, 115, 219, 366, 744, 949, 1065, 1118
MboI	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
MboII	GAAGA	5 cut(s)	52, 271, 311, 992, 1122
MflI	RGATCY	2 cut(s)	108, 1116
MhlI	GDGCHC	2 cut(s)	254, 301
MluCI	AATT	3 cut(s)	244, 492, 894
MmeI	TCCRAC	1 cut(s)	821
Mph1103I	ATGCAT	1 cut(s)	623
MroXI	GAANNNNTTC	2 cut(s)	496, 567
MseI	TTAA	3 cut(s)	342, 459, 827
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	2 cut(s)	97, 106
MspR9I	CCNGG	3 cut(s)	106, 347, 1007
MvaI	CCWGG	2 cut(s)	347, 1007
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	12, 23, 167, 193, 334
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
NlaIII	CATG	4 cut(s)	398, 605, 621, 1018
NlaIV	GGNNCC	5 cut(s)	104, 110, 239, 305, 1060
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	623
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PagI	TCATGA	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	496, 567
PfeI	GAWTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	1005
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	169, 172, 189, 234, 266, 679, 682
PpuMI	RGGWCCY	1 cut(s)	1042
Psp124BI	GAGCTC	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	1042
Psp6I	CCWGG	2 cut(s)	345, 1005
PspGI	CCWGG	2 cut(s)	345, 1005
PspN4I	GGNNCC	5 cut(s)	104, 110, 239, 305, 1060
PspPI	GGNCC	3 cut(s)	102, 303, 1042
PspPPI	RGGWCCY	1 cut(s)	1042
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	108, 1116
RsaI	GTAC	3 cut(s)	239, 393, 706
RsaNI	GTAC	3 cut(s)	238, 392, 705
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	342, 459, 827
SatI	GCNGC	7 cut(s)	168, 171, 188, 233, 265, 678, 681
Sau3AI	GATC	8 cut(s)	108, 113, 217, 364, 742, 947, 1063, 1116
Sau96I	GGNCC	3 cut(s)	102, 303, 1042
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	106, 347, 1007
SduI	GDGCHC	2 cut(s)	254, 301
SfaNI	GCATC	2 cut(s)	496, 884
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	3 cut(s)	102, 303, 1042
SmiMI	CAYNNNNRTG	1 cut(s)	399
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	3 cut(s)	244, 492, 894
SsiI	CCGC	6 cut(s)	71, 77, 168, 171, 235, 958
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	3 cut(s)	104, 345, 1005
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	3 cut(s)	203, 515, 1003
TaqI	TCGA	3 cut(s)	135, 248, 884
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	244, 492, 894
TatI	WGTACW	2 cut(s)	391, 704
TauI	GCSGC	2 cut(s)	170, 173
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	342, 459, 827
Tru9I	TTAA	3 cut(s)	342, 459, 827
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	5 cut(s)	187, 232, 264, 677, 680
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	485, 489
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	102, 303, 1042
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	244, 492
XceI	RCATGY	1 cut(s)	621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmnI	GAANNNNTTC	2 cut(s)	496, 567
ZrmI	AGTACT	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.