Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Forward (+)

4691880 .. 4694958

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1068600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGCAACCTCTGCGCCATCCTCGCACCCAAACCCGCCAAGCGAAAGCCCATAAAGCGCCTACCCAACCCGCCGGCGCAACCCAATTCCAGCAACCGCTGGACCCGTGTCCGATCCTCCCGGAAAGAGAAGCTCGACGACGCTCTAATCCAGGAACAAGCTCTCGCCGCCGCAATTCTGTTCCAGCAGCACCAGCAGAACGGCTCTCTGCCCTTTGATCGCTCCGCCTCCCTCCGCTACCCCAATTCCACTTCCAAGAAGGGCAGCAATGCCCTGCCCCGCAGCTCCAGCTCCCGCGCCAGGTCCCTCACCGACCCCCTCCTCCAGCCCCACCAGCTTGTCAATCAGGACGTTAAACTTGATGATCTAGAAACCAACCATTTTGTCCTTGTACATGGAGGTGGCTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTAGAGGAGGGTGGTTTTAAGGTTACTGCCGTAGACTTGACCGGCTCTGGTATTCATTCATCTGATACAAACAGCGTTACAAGTCTTTCACAATACGTGAAGCCTCTTTCTGATTTTCTCGAAAAACTTCCGGAGGGGAAGAAGGTAATATTGGCGGGTCATGATTTCGGTGGTGCATGTGTATCATATGCAATGGAGTTGTTTCCGGATAAAGTCGCAAAGGCCATTTTTATTGCTGCGGCAATGTTAAAGAACGGACAAAGTACTCTTGAAATGTTCTCCCAACAGGCAAGTTCAGACGATCTTATGCGCCAAGCCCAAGTATTTTTGTACGCAAATGGGAATGATCGGCCTCCAACTGCTATTGATCTTGATAAATCGTTGTTGAAGGATTTGTTATTTAACCAAAGTCCTGCCAAGGATGTCGCATTGGCATCCGTCTCTATGAGGCCAATTCCATTTGCCCCGGTTCTGGAGAAGCTCTCATTATCCAACTTGAAATATGGTTCGGTGAGGCGGTTCTATATAGAAACATCTGAAGACAATGCCATACCCACCACAGTCCAGGAGAGCATGATAAAAGAAAGCCCTCCCGAACAGGTCCTTCGCTTGAAAGGCGCTGATCACTCACCTTTTTTCTCAAAGCCTCAAGCCCTGCACAAGTTATTGGTGGAGATTTCAAAGATTTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

379

Amino Acids

41.51

Weight (kDa)

9.23

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	126 - 363	1.5e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	128 - 366	4.5e-22	Alpha/beta hydrolase family
Hydrolase_4	PF12146	128 - 235	1.9e-12	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	2 cut(s)	571, 646
AclWI	GGATC	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	999
AfaI	GTAC	3 cut(s)	393, 706, 773
AfiI	CCNNNNNNNGG	2 cut(s)	300, 913
AgsI	TTSAA	5 cut(s)	713, 829, 940, 1054, 1122
AjnI	CCWGG	3 cut(s)	150, 299, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	6 cut(s)	133, 161, 285, 291, 337, 922
AluI	AGCT	6 cut(s)	133, 161, 285, 291, 337, 922
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	108
Aor13HI	TCCGGA	2 cut(s)	571, 646
AoxI	GGCC	3 cut(s)	663, 791, 890
ApeKI	GCWGC	4 cut(s)	187, 264, 282, 677
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	6 cut(s)	17, 60, 79, 299, 753, 1061
AspS9I	GGNCC	3 cut(s)	102, 303, 1042
AsuC2I	CCSGG	2 cut(s)	121, 908
AsuHPI	GGTGA	3 cut(s)	301, 964, 1062
AvaII	GGWCC	3 cut(s)	102, 303, 1042
BbsI	GAAGAC	1 cut(s)	987
BbvI	GCAGC	4 cut(s)	199, 276, 294, 664
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	217, 455
BciT130I	CCWGG	3 cut(s)	152, 301, 1007
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	2 cut(s)	121, 908
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	2 cut(s)	368, 443
BfoI	RGCGCY	2 cut(s)	61, 1062
BisI	GCNGC	7 cut(s)	168, 171, 188, 265, 283, 678, 681
BlsI	GCNGC	7 cut(s)	169, 172, 189, 266, 284, 679, 682
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	5 cut(s)	121, 152, 301, 908, 1007
Bme18I	GGWCC	3 cut(s)	102, 303, 1042
BmgT120I	GGNCC	3 cut(s)	102, 303, 1042
BmiI	GGNNCC	2 cut(s)	104, 305
BmrFI	CCNGG	5 cut(s)	121, 152, 301, 908, 1007
BmsI	GCATC	1 cut(s)	884
BoxI	GACNNNNGTC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	3 cut(s)	271, 308, 935
BpuEI	CTTGAG	1 cut(s)	1074
BpuMI	CCSGG	2 cut(s)	121, 908
BsaAI	YACGTR	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	858, 906
BsaWI	WCCGGW	2 cut(s)	571, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 913
Bse118I	RCCGGY	2 cut(s)	73, 482
Bse3DI	GCAATG	4 cut(s)	274, 432, 639, 690
BseAI	TCCGGA	2 cut(s)	571, 646
BseBI	CCWGG	3 cut(s)	152, 301, 1007
BseDI	CCNNGG	2 cut(s)	858, 906
BseGI	GGATG	3 cut(s)	18, 868, 875
BseLI	CCNNNNNNNGG	2 cut(s)	300, 913
BseMI	GCAATG	4 cut(s)	274, 432, 639, 690
BseRI	GAGGAG	2 cut(s)	311, 461
BseXI	GCAGC	4 cut(s)	199, 276, 294, 664
BsgI	GTGCAG	1 cut(s)	1082
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	665, 793, 892
BsiSI	CCGG	6 cut(s)	74, 121, 483, 572, 647, 908
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	300, 913
BsmAI	GTCTC	1 cut(s)	886
BsmBI	CGTCTC	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	665, 793, 892
Bsp13I	TCCGGA	2 cut(s)	571, 646
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
BspANI	GGCC	3 cut(s)	665, 793, 892
BspEI	TCCGGA	2 cut(s)	571, 646
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	104, 305
BspPI	GGATC	1 cut(s)	108
BsrDI	GCAATG	4 cut(s)	274, 432, 639, 690
BsrFI	RCCGGY	2 cut(s)	73, 482
BsrGI	TGTACA	1 cut(s)	391
BssAI	RCCGGY	2 cut(s)	73, 482
BssECI	CCNNGG	2 cut(s)	858, 906
BssMI	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
BssT1I	CCWWGG	1 cut(s)	858
Bst2UI	CCWGG	3 cut(s)	152, 301, 1007
Bst4CI	ACNGT	1 cut(s)	1003
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	18, 868, 875
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	2 cut(s)	61, 1062
BstHHI	GCGC	6 cut(s)	17, 60, 79, 299, 753, 1061
BstKTI	GATC	7 cut(s)	116, 220, 367, 745, 790, 811, 1066
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
BstNI	CCWGG	3 cut(s)	152, 301, 1007
BstNSI	RCATGY	1 cut(s)	621
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	5 cut(s)	119, 150, 299, 906, 1005
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	199, 276, 294, 664
BstV2I	GAAGAC	1 cut(s)	987
BsuRI	GGCC	3 cut(s)	665, 793, 892
BtsCI	GGATG	3 cut(s)	18, 868, 875
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	6 cut(s)	17, 60, 79, 299, 753, 1061
Cfr10I	RCCGGY	2 cut(s)	73, 482
Cfr13I	GGNCC	3 cut(s)	102, 303, 1042
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	392, 705, 772
CviAII	CATG	4 cut(s)	395, 602, 618, 1015
CviQI	GTAC	3 cut(s)	392, 705, 772
DpnI	GATC	7 cut(s)	115, 219, 366, 744, 789, 810, 1065
DpnII	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	858
Eco47I	GGWCC	3 cut(s)	102, 303, 1042
Eco57I	CTGAAG	1 cut(s)	999
EcoO109I	RGGNCCY	2 cut(s)	303, 1042
EcoRII	CCWGG	3 cut(s)	150, 299, 1005
EcoT14I	CCWWGG	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	4 cut(s)	398, 605, 621, 1018
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	4 cut(s)	394, 601, 617, 1014
FauI	CCCGC	5 cut(s)	43, 78, 287, 302, 589
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	7 cut(s)	168, 171, 188, 265, 283, 678, 681
FokI	GGATG	3 cut(s)	5, 862, 875
Fsp4HI	GCNGC	7 cut(s)	168, 171, 188, 265, 283, 678, 681
FspBI	CTAG	2 cut(s)	368, 443
GlaI	GCGC	6 cut(s)	16, 59, 78, 298, 752, 1060
GluI	GCNGC	7 cut(s)	168, 171, 188, 265, 283, 678, 681
GsuI	CTGGAG	3 cut(s)	271, 308, 935
HaeII	RGCGCY	2 cut(s)	61, 1062
HaeIII	GGCC	3 cut(s)	665, 793, 892
HapII	CCGG	6 cut(s)	74, 121, 483, 572, 647, 908
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	6 cut(s)	17, 60, 79, 299, 753, 1061
Hin1II	CATG	4 cut(s)	398, 605, 621, 1018
Hin6I	GCGC	6 cut(s)	15, 58, 77, 297, 751, 1059
HinP1I	GCGC	6 cut(s)	15, 58, 77, 297, 751, 1059
HpaII	CCGG	6 cut(s)	74, 121, 483, 572, 647, 908
HphI	GGTGA	3 cut(s)	301, 964, 1062
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	5 cut(s)	113, 505, 553, 739, 979
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyAV	CCTTC	4 cut(s)	253, 577, 823, 1055
HpyCH4III	ACNGT	1 cut(s)	1003
HpyCH4IV	ACGT	2 cut(s)	351, 537
HpyCH4V	TGCA	4 cut(s)	437, 617, 632, 1099
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
HpySE526I	ACGT	2 cut(s)	351, 537
Hsp92II	CATG	4 cut(s)	398, 605, 621, 1018
HspAI	GCGC	6 cut(s)	15, 58, 77, 297, 751, 1059
Kpn2I	TCCGGA	2 cut(s)	571, 646
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
LmnI	GCTCC	3 cut(s)	227, 290, 296
Lsp1109I	GCAGC	4 cut(s)	199, 276, 294, 664
LweI	GCATC	1 cut(s)	884
MaeI	CTAG	2 cut(s)	368, 443
MaeII	ACGT	2 cut(s)	351, 537
MaeIII	GTNAC	2 cut(s)	463, 517
MalI	GATC	7 cut(s)	115, 219, 366, 744, 789, 810, 1065
MboI	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
MboII	GAAGA	2 cut(s)	592, 992
MluCI	AATT	4 cut(s)	85, 174, 244, 894
MmeI	TCCRAC	2 cut(s)	821, 957
MreI	CGCCGGCG	1 cut(s)	73
MroI	TCCGGA	2 cut(s)	571, 646
MroNI	GCCGGC	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	4 cut(s)	354, 459, 689, 843
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	6 cut(s)	74, 121, 483, 572, 647, 908
MspR9I	CCNGG	5 cut(s)	121, 152, 301, 908, 1007
MvaI	CCWGG	3 cut(s)	152, 301, 1007
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	121, 908
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	398, 605, 621, 1018
NlaIV	GGNNCC	2 cut(s)	104, 305
NspI	RCATGY	1 cut(s)	621
PagI	TCATGA	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	567
PfoI	TCCNGGA	3 cut(s)	119, 150, 1005
PkrI	GCNGC	7 cut(s)	169, 172, 189, 266, 284, 679, 682
Ppu21I	YACGTR	1 cut(s)	538
PpuMI	RGGWCCY	2 cut(s)	303, 1042
PshAI	GACNNNNGTC	1 cut(s)	107
Psp5II	RGGWCCY	2 cut(s)	303, 1042
Psp6I	CCWGG	3 cut(s)	150, 299, 1005
PspGI	CCWGG	3 cut(s)	150, 299, 1005
PspN4I	GGNNCC	2 cut(s)	104, 305
PspPI	GGNCC	3 cut(s)	102, 303, 1042
PspPPI	RGGWCCY	2 cut(s)	303, 1042
RsaI	GTAC	3 cut(s)	393, 706, 773
RsaNI	GTAC	3 cut(s)	392, 705, 772
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	354, 459, 689, 843
SatI	GCNGC	7 cut(s)	168, 171, 188, 265, 283, 678, 681
Sau3AI	GATC	7 cut(s)	113, 217, 364, 742, 787, 808, 1063
Sau96I	GGNCC	3 cut(s)	102, 303, 1042
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	5 cut(s)	121, 152, 301, 908, 1007
SfaNI	GCATC	1 cut(s)	884
SgrAI	CRCCGGYG	1 cut(s)	73
SinI	GGWCC	3 cut(s)	102, 303, 1042
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	1089
SmoI	CTYRAG	1 cut(s)	1089
Sse9I	AATT	4 cut(s)	85, 174, 244, 894
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	368, 443
StyD4I	CCNGG	5 cut(s)	119, 150, 299, 906, 1005
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	1 cut(s)	1003
TaiI	ACGT	2 cut(s)	354, 540
TaqI	TCGA	2 cut(s)	135, 561
TasI	AATT	4 cut(s)	85, 174, 244, 894
TatI	WGTACW	2 cut(s)	391, 704
TauI	GCSGC	3 cut(s)	170, 173, 683
Tru1I	TTAA	4 cut(s)	354, 459, 689, 843
Tru9I	TTAA	4 cut(s)	354, 459, 689, 843
TseI	GCWGC	4 cut(s)	187, 264, 282, 677
TspDTI	ATGAA	2 cut(s)	485, 489
TspGWI	ACGGA	2 cut(s)	711, 868
VpaK11BI	GGWCC	3 cut(s)	102, 303, 1042
XbaI	TCTAGA	2 cut(s)	367, 442
XceI	RCATGY	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	368, 443
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.